Gcaud971.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud971.t1
Unique Name	Gcaud971.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	642

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2596_length_5195_cov_4.122649	contig	NODE_2596_length_5195_cov_4.122649:2338..4263 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1347393.HG726020_gene959
PFAMs	Pyridoxal_deC
Max annot lvl	976\|Bacteroidetes
KEGG rclass	RC00299
KEGG ko	ko:K01593
KEGG Reaction	R00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathway	ko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG Module	M00037,M00042
Evalue	1.34e-207
EggNOG OGs	COG0076@1\|root,COG0076@2\|Bacteria,4PIBD@976\|Bacteroidetes,2FVKM@200643\|Bacteroidia
EC	4.1.1.105,4.1.1.28
Description	Pyridoxal-dependent decarboxylase conserved domain
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud971	Gcaud971	Gracilaria caudata M_176_S67 male	gene	NODE_2596_length_5195_cov_4.122649 2338..4263 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud971.t1.stop1	Gcaud971.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2596_length_5195_cov_4.122649 2338..2340 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud971.t1.CDS1	Gcaud971.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2596_length_5195_cov_4.122649 2338..4263 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud971.t1.exon1	Gcaud971.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2596_length_5195_cov_4.122649 2338..4263 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud971.t1.start1	Gcaud971.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2596_length_5195_cov_4.122649 4261..4263 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud971.t1	Gcaud971.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2596_length_5195_cov_4.122649 2338..4263 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2596_length_5195_cov_4.122649:2338..4263-
coding sequence from alignment at NODE_2596_length_5195_cov_4.122649:2338..4263-

mRNA sequence

>Gcaud971.t1 ID=Gcaud971.t1|Name=Gcaud971.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=642bp
MPKGNGMEKGHLKHMFRANGRLGRKAPPWLRIRASMQNSFPTYYSTSLDK
FAIEMGESVRLLNTLKPARDGPPYIGEDPSIPDYSDVSDARMEEHPMSLD
DVVQDCVDLFDGMPHWSHPFTMPNVIPPANKASIIAATLTNIFSPNIIEG
EYAWNVEKAEMESAAMITDLIGWDTAEAGGIYTYGGSGCYLYGMKYALTQ
VLGVKSRCNGIRTDGVLLSSQQGHYAKMNATDWTGLGMNNIIDIETDDDT
NEMDVEHLEEVLQDCHKKGIPVISVICTMGTTDAFAVDPVKKVRELVDKY
PNPPGFGKPFIYCDAVIGWSWLFFKDYDFTHNPLKFNDTVLPRLKRNYER
IKDVVYADAMGIDFHKTGWCTYNCSMFAMKDLNHFREMMTRPGSAYLQER
TPYNPGLYTLEVSRSGSYALAGWATLKYFGLSGFRSVLGGILEIQAYLRE
QLEDEESMVCVNEEDNGFVTLIRVYPPGVDAAVQFEREVSDPAALEELKE
NNTLQQKVADMIWAWFRSGKKVDGLYGAYTSYTSGFRTTDYNDDMSSDAV
VYALKAFPMNVNITTDTMDKLIEVVKKARERVLAGETVEPPEHQVCPPYD
KKNPAITCGDAKQEAPKARIHDMVSGVVGSRAYSRLRRPKA*

spliced messenger RNA

>Gcaud971.t1 ID=Gcaud971.t1|Name=Gcaud971.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1926bp|location=Sequence derived from alignment at NODE_2596_length_5195_cov_4.122649:2338..4263- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAGGGAAATGGAATGGAGAAGGGACATCTGAAGCATATGTTTCG
CGCCAATGGTCGTCTCGGACGCAAAGCTCCACCATGGCTTCGCATCCGAG
CCTCGATGCAAAACAGCTTCCCCACATACTACTCCACAAGCCTCGATAAG
TTCGCCATCGAGATGGGCGAATCCGTTCGCCTGCTCAACACCTTAAAGCC
CGCTCGTGACGGCCCGCCGTATATCGGGGAAGACCCATCTATCCCAGACT
ATTCGGACGTGAGCGACGCTCGTATGGAGGAGCACCCAATGTCTCTAGAT
GACGTGGTTCAGGATTGCGTGGATCTTTTCGATGGAATGCCGCACTGGAG
TCATCCGTTTACCATGCCCAACGTAATCCCACCCGCTAACAAAGCGTCTA
TCATTGCCGCAACGCTGACCAACATCTTCAGCCCAAACATCATCGAAGGC
GAGTATGCTTGGAATGTGGAGAAGGCGGAGATGGAATCGGCGGCTATGAT
TACTGATCTCATCGGATGGGATACCGCTGAAGCTGGAGGGATCTATACAT
ACGGAGGGTCTGGCTGCTACTTATATGGCATGAAGTACGCGCTTACTCAG
GTGCTGGGCGTGAAGTCTCGCTGCAATGGAATTCGCACGGACGGAGTGCT
GTTGTCGTCTCAGCAGGGCCATTACGCAAAGATGAACGCGACTGACTGGA
CCGGATTGGGCATGAACAATATCATCGATATTGAGACGGACGACGACACC
AACGAGATGGACGTGGAGCACCTAGAGGAAGTGCTTCAGGACTGTCACAA
GAAAGGAATTCCAGTGATCTCCGTGATTTGCACAATGGGCACTACGGACG
CGTTCGCTGTGGACCCTGTGAAGAAGGTCCGCGAGCTTGTGGATAAGTAC
CCCAATCCTCCCGGGTTCGGTAAGCCATTCATCTACTGTGATGCAGTAAT
CGGGTGGTCATGGTTGTTCTTCAAGGACTACGACTTCACTCACAACCCGT
TGAAGTTCAACGACACAGTGTTGCCTCGCCTAAAGAGGAACTACGAGCGC
ATCAAGGACGTAGTGTACGCAGATGCAATGGGCATCGACTTTCACAAGAC
GGGCTGGTGCACTTACAACTGCAGTATGTTCGCAATGAAGGATCTCAACC
ACTTCAGAGAGATGATGACGCGCCCAGGATCGGCGTACCTGCAGGAGCGC
ACGCCGTACAACCCGGGGCTGTACACTCTGGAGGTGTCACGTTCTGGCTC
GTACGCACTAGCTGGGTGGGCGACGCTCAAGTACTTTGGATTGTCAGGCT
TCCGCTCCGTTCTTGGTGGCATTCTTGAAATCCAAGCGTACCTGAGGGAG
CAGCTGGAGGATGAGGAATCGATGGTATGCGTGAATGAGGAGGATAATGG
GTTCGTGACGCTCATTCGAGTGTACCCCCCCGGGGTGGACGCAGCGGTGC
AATTCGAGCGGGAAGTGAGCGATCCCGCGGCCCTGGAGGAACTGAAGGAG
AACAACACGCTACAGCAGAAAGTGGCGGACATGATCTGGGCATGGTTCCG
TAGCGGCAAGAAGGTGGACGGACTATACGGCGCGTACACGAGCTATACTT
CTGGCTTCCGTACCACCGATTACAATGACGACATGTCTTCGGATGCGGTG
GTGTACGCGCTGAAGGCGTTCCCGATGAACGTGAATATCACCACGGATAC
CATGGACAAGCTCATCGAGGTGGTGAAGAAGGCGCGCGAGCGGGTGCTGG
CAGGAGAGACGGTGGAGCCACCAGAGCACCAGGTGTGCCCGCCGTATGAC
AAGAAGAACCCTGCCATCACGTGCGGTGACGCGAAGCAGGAAGCACCCAA
GGCTCGCATCCACGACATGGTGTCGGGTGTGGTCGGTAGCCGCGCGTACT
CCCGCCTCAGGCGCCCGAAAGCGTAG

protein sequence of Gcaud971.t1

>Gcaud971.t1 ID=Gcaud971.t1|Name=Gcaud971.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=642bp
MPKGNGMEKGHLKHMFRANGRLGRKAPPWLRIRASMQNSFPTYYSTSLDK
FAIEMGESVRLLNTLKPARDGPPYIGEDPSIPDYSDVSDARMEEHPMSLD
DVVQDCVDLFDGMPHWSHPFTMPNVIPPANKASIIAATLTNIFSPNIIEG
EYAWNVEKAEMESAAMITDLIGWDTAEAGGIYTYGGSGCYLYGMKYALTQ
VLGVKSRCNGIRTDGVLLSSQQGHYAKMNATDWTGLGMNNIIDIETDDDT
NEMDVEHLEEVLQDCHKKGIPVISVICTMGTTDAFAVDPVKKVRELVDKY
PNPPGFGKPFIYCDAVIGWSWLFFKDYDFTHNPLKFNDTVLPRLKRNYER
IKDVVYADAMGIDFHKTGWCTYNCSMFAMKDLNHFREMMTRPGSAYLQER
TPYNPGLYTLEVSRSGSYALAGWATLKYFGLSGFRSVLGGILEIQAYLRE
QLEDEESMVCVNEEDNGFVTLIRVYPPGVDAAVQFEREVSDPAALEELKE
NNTLQQKVADMIWAWFRSGKKVDGLYGAYTSYTSGFRTTDYNDDMSSDAV
VYALKAFPMNVNITTDTMDKLIEVVKKARERVLAGETVEPPEHQVCPPYD
KKNPAITCGDAKQEAPKARIHDMVSGVVGSRAYSRLRRPKA*

mRNA from alignment at NODE_2596_length_5195_cov_4.122649:2338..4263-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud971.t1 ID=Gcaud971.t1|Name=Gcaud971.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1926bp|location=Sequence derived from alignment at NODE_2596_length_5195_cov_4.122649:2338..4263- (Gracilaria caudata M_176_S67 male)
ATGCCGAAGGGAAATGGAATGGAGAAGGGACATCTGAAGCATATGTTTCG
CGCCAATGGTCGTCTCGGACGCAAAGCTCCACCATGGCTTCGCATCCGAG
CCTCGATGCAAAACAGCTTCCCCACATACTACTCCACAAGCCTCGATAAG
TTCGCCATCGAGATGGGCGAATCCGTTCGCCTGCTCAACACCTTAAAGCC
CGCTCGTGACGGCCCGCCGTATATCGGGGAAGACCCATCTATCCCAGACT
ATTCGGACGTGAGCGACGCTCGTATGGAGGAGCACCCAATGTCTCTAGAT
GACGTGGTTCAGGATTGCGTGGATCTTTTCGATGGAATGCCGCACTGGAG
TCATCCGTTTACCATGCCCAACGTAATCCCACCCGCTAACAAAGCGTCTA
TCATTGCCGCAACGCTGACCAACATCTTCAGCCCAAACATCATCGAAGGC
GAGTATGCTTGGAATGTGGAGAAGGCGGAGATGGAATCGGCGGCTATGAT
TACTGATCTCATCGGATGGGATACCGCTGAAGCTGGAGGGATCTATACAT
ACGGAGGGTCTGGCTGCTACTTATATGGCATGAAGTACGCGCTTACTCAG
GTGCTGGGCGTGAAGTCTCGCTGCAATGGAATTCGCACGGACGGAGTGCT
GTTGTCGTCTCAGCAGGGCCATTACGCAAAGATGAACGCGACTGACTGGA
CCGGATTGGGCATGAACAATATCATCGATATTGAGACGGACGACGACACC
AACGAGATGGACGTGGAGCACCTAGAGGAAGTGCTTCAGGACTGTCACAA
GAAAGGAATTCCAGTGATCTCCGTGATTTGCACAATGGGCACTACGGACG
CGTTCGCTGTGGACCCTGTGAAGAAGGTCCGCGAGCTTGTGGATAAGTAC
CCCAATCCTCCCGGGTTCGGTAAGCCATTCATCTACTGTGATGCAGTAAT
CGGGTGGTCATGGTTGTTCTTCAAGGACTACGACTTCACTCACAACCCGT
TGAAGTTCAACGACACAGTGTTGCCTCGCCTAAAGAGGAACTACGAGCGC
ATCAAGGACGTAGTGTACGCAGATGCAATGGGCATCGACTTTCACAAGAC
GGGCTGGTGCACTTACAACTGCAGTATGTTCGCAATGAAGGATCTCAACC
ACTTCAGAGAGATGATGACGCGCCCAGGATCGGCGTACCTGCAGGAGCGC
ACGCCGTACAACCCGGGGCTGTACACTCTGGAGGTGTCACGTTCTGGCTC
GTACGCACTAGCTGGGTGGGCGACGCTCAAGTACTTTGGATTGTCAGGCT
TCCGCTCCGTTCTTGGTGGCATTCTTGAAATCCAAGCGTACCTGAGGGAG
CAGCTGGAGGATGAGGAATCGATGGTATGCGTGAATGAGGAGGATAATGG
GTTCGTGACGCTCATTCGAGTGTACCCCCCCGGGGTGGACGCAGCGGTGC
AATTCGAGCGGGAAGTGAGCGATCCCGCGGCCCTGGAGGAACTGAAGGAG
AACAACACGCTACAGCAGAAAGTGGCGGACATGATCTGGGCATGGTTCCG
TAGCGGCAAGAAGGTGGACGGACTATACGGCGCGTACACGAGCTATACTT
CTGGCTTCCGTACCACCGATTACAATGACGACATGTCTTCGGATGCGGTG
GTGTACGCGCTGAAGGCGTTCCCGATGAACGTGAATATCACCACGGATAC
CATGGACAAGCTCATCGAGGTGGTGAAGAAGGCGCGCGAGCGGGTGCTGG
CAGGAGAGACGGTGGAGCCACCAGAGCACCAGGTGTGCCCGCCGTATGAC
AAGAAGAACCCTGCCATCACGTGCGGTGACGCGAAGCAGGAAGCACCCAA
GGCTCGCATCCACGACATGGTGTCGGGTGTGGTCGGTAGCCGCGCGTACT
CCCGCCTCAGGCGCCCGAAAGCGTAG

Coding sequence (CDS) from alignment at NODE_2596_length_5195_cov_4.122649:2338..4263-

>Gcaud971.t1 ID=Gcaud971.t1|Name=Gcaud971.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1926bp|location=Sequence derived from alignment at NODE_2596_length_5195_cov_4.122649:2338..4263- (Gracilaria caudata M_176_S67 male)
ATGCCGAAGGGAAATGGAATGGAGAAGGGACATCTGAAGCATATGTTTCG
CGCCAATGGTCGTCTCGGACGCAAAGCTCCACCATGGCTTCGCATCCGAG
CCTCGATGCAAAACAGCTTCCCCACATACTACTCCACAAGCCTCGATAAG
TTCGCCATCGAGATGGGCGAATCCGTTCGCCTGCTCAACACCTTAAAGCC
CGCTCGTGACGGCCCGCCGTATATCGGGGAAGACCCATCTATCCCAGACT
ATTCGGACGTGAGCGACGCTCGTATGGAGGAGCACCCAATGTCTCTAGAT
GACGTGGTTCAGGATTGCGTGGATCTTTTCGATGGAATGCCGCACTGGAG
TCATCCGTTTACCATGCCCAACGTAATCCCACCCGCTAACAAAGCGTCTA
TCATTGCCGCAACGCTGACCAACATCTTCAGCCCAAACATCATCGAAGGC
GAGTATGCTTGGAATGTGGAGAAGGCGGAGATGGAATCGGCGGCTATGAT
TACTGATCTCATCGGATGGGATACCGCTGAAGCTGGAGGGATCTATACAT
ACGGAGGGTCTGGCTGCTACTTATATGGCATGAAGTACGCGCTTACTCAG
GTGCTGGGCGTGAAGTCTCGCTGCAATGGAATTCGCACGGACGGAGTGCT
GTTGTCGTCTCAGCAGGGCCATTACGCAAAGATGAACGCGACTGACTGGA
CCGGATTGGGCATGAACAATATCATCGATATTGAGACGGACGACGACACC
AACGAGATGGACGTGGAGCACCTAGAGGAAGTGCTTCAGGACTGTCACAA
GAAAGGAATTCCAGTGATCTCCGTGATTTGCACAATGGGCACTACGGACG
CGTTCGCTGTGGACCCTGTGAAGAAGGTCCGCGAGCTTGTGGATAAGTAC
CCCAATCCTCCCGGGTTCGGTAAGCCATTCATCTACTGTGATGCAGTAAT
CGGGTGGTCATGGTTGTTCTTCAAGGACTACGACTTCACTCACAACCCGT
TGAAGTTCAACGACACAGTGTTGCCTCGCCTAAAGAGGAACTACGAGCGC
ATCAAGGACGTAGTGTACGCAGATGCAATGGGCATCGACTTTCACAAGAC
GGGCTGGTGCACTTACAACTGCAGTATGTTCGCAATGAAGGATCTCAACC
ACTTCAGAGAGATGATGACGCGCCCAGGATCGGCGTACCTGCAGGAGCGC
ACGCCGTACAACCCGGGGCTGTACACTCTGGAGGTGTCACGTTCTGGCTC
GTACGCACTAGCTGGGTGGGCGACGCTCAAGTACTTTGGATTGTCAGGCT
TCCGCTCCGTTCTTGGTGGCATTCTTGAAATCCAAGCGTACCTGAGGGAG
CAGCTGGAGGATGAGGAATCGATGGTATGCGTGAATGAGGAGGATAATGG
GTTCGTGACGCTCATTCGAGTGTACCCCCCCGGGGTGGACGCAGCGGTGC
AATTCGAGCGGGAAGTGAGCGATCCCGCGGCCCTGGAGGAACTGAAGGAG
AACAACACGCTACAGCAGAAAGTGGCGGACATGATCTGGGCATGGTTCCG
TAGCGGCAAGAAGGTGGACGGACTATACGGCGCGTACACGAGCTATACTT
CTGGCTTCCGTACCACCGATTACAATGACGACATGTCTTCGGATGCGGTG
GTGTACGCGCTGAAGGCGTTCCCGATGAACGTGAATATCACCACGGATAC
CATGGACAAGCTCATCGAGGTGGTGAAGAAGGCGCGCGAGCGGGTGCTGG
CAGGAGAGACGGTGGAGCCACCAGAGCACCAGGTGTGCCCGCCGTATGAC
AAGAAGAACCCTGCCATCACGTGCGGTGACGCGAAGCAGGAAGCACCCAA
GGCTCGCATCCACGACATGGTGTCGGGTGTGGTCGGTAGCCGCGCGTACT
CCCGCCTCAGGCGCCCGAAAGCGTAG