Gcaud9700.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9700.t1
Unique Name	Gcaud9700.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	292

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_82_length_55453_cov_4.345977	contig	NODE_82_length_55453_cov_4.345977:33571..34446 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72664.XP_006405548.1
Preferred name	SOS2
PFAMs	NAF,Pkinase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07198
KEGG Pathway	ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
GOs	GO:0000325,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009705,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0031090,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0098588,GO:0098805,GO:0140096,GO:1901564
Evalue	1.54e-82
EggNOG OGs	KOG0583@1\|root,KOG0583@2759\|Eukaryota,37I6U@33090\|Viridiplantae,3GAMQ@35493\|Streptophyta,3HT3Q@3699\|Brassicales
EC	2.7.11.11
Description	Non-specific serine threonine protein kinase
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001,ko03029,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9700	Gcaud9700	Gracilaria caudata M_176_S67 male	gene	NODE_82_length_55453_cov_4.345977 33571..34446 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9700.t1.stop1	Gcaud9700.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_82_length_55453_cov_4.345977 33571..33573 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9700.t1.CDS1	Gcaud9700.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_82_length_55453_cov_4.345977 33571..34446 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9700.t1.exon1	Gcaud9700.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_82_length_55453_cov_4.345977 33571..34446 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9700.t1.start1	Gcaud9700.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_82_length_55453_cov_4.345977 34444..34446 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9700.t1	Gcaud9700.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_82_length_55453_cov_4.345977 33571..34446 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_82_length_55453_cov_4.345977:33571..34446-
coding sequence from alignment at NODE_82_length_55453_cov_4.345977:33571..34446-

mRNA sequence

>Gcaud9700.t1 ID=Gcaud9700.t1|Name=Gcaud9700.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=292bp
MVRVGPYELGATLGRGNYGLVKLAVNCDTGEQFAVKIVKKEVLQDEAQAN
VDIKREIAIMKALDHHNIVALSDVLYSPKRVFLVMELVRGGELFESIVKN
GRQPEEVARKYFHQLIDAVHYCHHRGIYHRDLKPENLLLGENGELKITDF
GFSAMKDYGSHMLKTNCGSPHYCAPEVWNGDQTHYDGRKNDAWSCGIILY
VMLTGKQPFYDEDDDVLLDKVNAGVVDYPEYVSDGARDLMERLMQKNPKK
RYSLSKVKRHPWFAVGYDAERDALLKQQVGRRERKDRERGK*

spliced messenger RNA

>Gcaud9700.t1 ID=Gcaud9700.t1|Name=Gcaud9700.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=876bp|location=Sequence derived from alignment at NODE_82_length_55453_cov_4.345977:33571..34446- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGGGTTGGACCCTATGAACTTGGAGCTACGCTCGGTAGGGGAAA
TTACGGCCTGGTAAAACTGGCTGTCAACTGCGACACAGGCGAGCAGTTTG
CTGTGAAGATAGTGAAGAAGGAAGTGTTGCAAGATGAGGCTCAGGCAAAT
GTGGATATCAAGCGTGAGATTGCGATAATGAAAGCTTTGGACCATCACAA
CATCGTCGCCCTCAGTGATGTGCTTTATTCACCAAAGCGGGTTTTTCTGG
TCATGGAACTCGTTAGAGGCGGAGAACTATTTGAAAGCATTGTTAAAAAC
GGGCGACAACCTGAGGAAGTAGCCCGCAAGTATTTTCATCAGCTAATCGA
CGCTGTCCACTACTGCCACCACAGAGGTATTTATCACCGCGATCTCAAAC
CCGAAAACTTGTTACTCGGTGAGAATGGAGAACTGAAGATAACAGATTTC
GGCTTCAGCGCAATGAAGGACTACGGCTCTCACATGCTGAAAACAAATTG
TGGCTCTCCTCACTACTGTGCGCCAGAGGTATGGAACGGTGATCAGACGC
ACTATGACGGTAGAAAGAACGACGCGTGGAGCTGCGGTATTATTCTTTAC
GTAATGCTAACCGGAAAGCAACCGTTTTACGATGAGGATGACGACGTTCT
ATTGGACAAGGTTAATGCAGGTGTTGTAGATTACCCGGAATATGTGTCGG
ATGGTGCCAGGGACCTGATGGAACGTCTTATGCAAAAGAATCCAAAGAAA
CGTTACTCGCTATCGAAGGTAAAGCGACATCCGTGGTTTGCGGTTGGTTA
CGACGCCGAGAGGGATGCCTTGCTGAAACAACAAGTGGGGCGCCGTGAGC
GCAAAGACAGAGAACGTGGAAAGTGA

protein sequence of Gcaud9700.t1

>Gcaud9700.t1 ID=Gcaud9700.t1|Name=Gcaud9700.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=292bp
MVRVGPYELGATLGRGNYGLVKLAVNCDTGEQFAVKIVKKEVLQDEAQAN
VDIKREIAIMKALDHHNIVALSDVLYSPKRVFLVMELVRGGELFESIVKN
GRQPEEVARKYFHQLIDAVHYCHHRGIYHRDLKPENLLLGENGELKITDF
GFSAMKDYGSHMLKTNCGSPHYCAPEVWNGDQTHYDGRKNDAWSCGIILY
VMLTGKQPFYDEDDDVLLDKVNAGVVDYPEYVSDGARDLMERLMQKNPKK
RYSLSKVKRHPWFAVGYDAERDALLKQQVGRRERKDRERGK*

mRNA from alignment at NODE_82_length_55453_cov_4.345977:33571..34446-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9700.t1 ID=Gcaud9700.t1|Name=Gcaud9700.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=876bp|location=Sequence derived from alignment at NODE_82_length_55453_cov_4.345977:33571..34446- (Gracilaria caudata M_176_S67 male)
ATGGTTCGGGTTGGACCCTATGAACTTGGAGCTACGCTCGGTAGGGGAAA
TTACGGCCTGGTAAAACTGGCTGTCAACTGCGACACAGGCGAGCAGTTTG
CTGTGAAGATAGTGAAGAAGGAAGTGTTGCAAGATGAGGCTCAGGCAAAT
GTGGATATCAAGCGTGAGATTGCGATAATGAAAGCTTTGGACCATCACAA
CATCGTCGCCCTCAGTGATGTGCTTTATTCACCAAAGCGGGTTTTTCTGG
TCATGGAACTCGTTAGAGGCGGAGAACTATTTGAAAGCATTGTTAAAAAC
GGGCGACAACCTGAGGAAGTAGCCCGCAAGTATTTTCATCAGCTAATCGA
CGCTGTCCACTACTGCCACCACAGAGGTATTTATCACCGCGATCTCAAAC
CCGAAAACTTGTTACTCGGTGAGAATGGAGAACTGAAGATAACAGATTTC
GGCTTCAGCGCAATGAAGGACTACGGCTCTCACATGCTGAAAACAAATTG
TGGCTCTCCTCACTACTGTGCGCCAGAGGTATGGAACGGTGATCAGACGC
ACTATGACGGTAGAAAGAACGACGCGTGGAGCTGCGGTATTATTCTTTAC
GTAATGCTAACCGGAAAGCAACCGTTTTACGATGAGGATGACGACGTTCT
ATTGGACAAGGTTAATGCAGGTGTTGTAGATTACCCGGAATATGTGTCGG
ATGGTGCCAGGGACCTGATGGAACGTCTTATGCAAAAGAATCCAAAGAAA
CGTTACTCGCTATCGAAGGTAAAGCGACATCCGTGGTTTGCGGTTGGTTA
CGACGCCGAGAGGGATGCCTTGCTGAAACAACAAGTGGGGCGCCGTGAGC
GCAAAGACAGAGAACGTGGAAAGTGA

Coding sequence (CDS) from alignment at NODE_82_length_55453_cov_4.345977:33571..34446-

>Gcaud9700.t1 ID=Gcaud9700.t1|Name=Gcaud9700.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=876bp|location=Sequence derived from alignment at NODE_82_length_55453_cov_4.345977:33571..34446- (Gracilaria caudata M_176_S67 male)
ATGGTTCGGGTTGGACCCTATGAACTTGGAGCTACGCTCGGTAGGGGAAA
TTACGGCCTGGTAAAACTGGCTGTCAACTGCGACACAGGCGAGCAGTTTG
CTGTGAAGATAGTGAAGAAGGAAGTGTTGCAAGATGAGGCTCAGGCAAAT
GTGGATATCAAGCGTGAGATTGCGATAATGAAAGCTTTGGACCATCACAA
CATCGTCGCCCTCAGTGATGTGCTTTATTCACCAAAGCGGGTTTTTCTGG
TCATGGAACTCGTTAGAGGCGGAGAACTATTTGAAAGCATTGTTAAAAAC
GGGCGACAACCTGAGGAAGTAGCCCGCAAGTATTTTCATCAGCTAATCGA
CGCTGTCCACTACTGCCACCACAGAGGTATTTATCACCGCGATCTCAAAC
CCGAAAACTTGTTACTCGGTGAGAATGGAGAACTGAAGATAACAGATTTC
GGCTTCAGCGCAATGAAGGACTACGGCTCTCACATGCTGAAAACAAATTG
TGGCTCTCCTCACTACTGTGCGCCAGAGGTATGGAACGGTGATCAGACGC
ACTATGACGGTAGAAAGAACGACGCGTGGAGCTGCGGTATTATTCTTTAC
GTAATGCTAACCGGAAAGCAACCGTTTTACGATGAGGATGACGACGTTCT
ATTGGACAAGGTTAATGCAGGTGTTGTAGATTACCCGGAATATGTGTCGG
ATGGTGCCAGGGACCTGATGGAACGTCTTATGCAAAAGAATCCAAAGAAA
CGTTACTCGCTATCGAAGGTAAAGCGACATCCGTGGTTTGCGGTTGGTTA
CGACGCCGAGAGGGATGCCTTGCTGAAACAACAAGTGGGGCGCCGTGAGC
GCAAAGACAGAGAACGTGGAAAGTGA