Gcaud9664.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9664.t1
Unique NameGcaud9664.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length85
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1174_length_13036_cov_4.454847contigNODE_1174_length_13036_cov_4.454847:11895..12207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9664Gcaud9664Gracilaria caudata M_176_S67 malegeneNODE_1174_length_13036_cov_4.454847 11895..12207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9664.t1Gcaud9664.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1174_length_13036_cov_4.454847 11895..12207 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9664.t1.stop1Gcaud9664.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1174_length_13036_cov_4.454847 11895..11897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9664.t1.CDS1Gcaud9664.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1174_length_13036_cov_4.454847 11895..11909 -
Gcaud9664.t1.CDS2Gcaud9664.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1174_length_13036_cov_4.454847 11968..12207 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9664.t1.exon1Gcaud9664.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1174_length_13036_cov_4.454847 11895..11909 -
Gcaud9664.t1.exon2Gcaud9664.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1174_length_13036_cov_4.454847 11968..12207 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9664.t1.intron1Gcaud9664.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1174_length_13036_cov_4.454847 11910..11967 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9664.t1.start1Gcaud9664.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1174_length_13036_cov_4.454847 12205..12207 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9664.t1 ID=Gcaud9664.t1|Name=Gcaud9664.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=85bp
MTPPHSAFVLSHPFLSGTSTYTLISPFRPTSRSSTCSPRATLTNPPPRVA
GGGRAPTADNFDRYDGKCRKAFTELASDPNYTAV*
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spliced messenger RNA

>Gcaud9664.t1 ID=Gcaud9664.t1|Name=Gcaud9664.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp|location=Sequence derived from alignment at NODE_1174_length_13036_cov_4.454847:11895..12207- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACCGCCACATTCTGCATTCGTCCTTTCTCACCCTTTCCTTTCGGG
CACTTCCACCTATACCCTCATCAGCCCGTTTCGCCCTACCTCCCGTAGTT
CTACATGTAGCCCGCGTGCCACTTTGACTAATCCGCCTCCACGCGTGGCC
GGTGGTGGACGAGCCCCCACGGCTGACAACTTTGATCGATATGATGGAAA
ATGTCGTAAAGCCTTTACTGAGCTCGCGTCTGATCCCAACTATACCGCTG
TCTAG
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protein sequence of Gcaud9664.t1

>Gcaud9664.t1 ID=Gcaud9664.t1|Name=Gcaud9664.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=85bp
MTPPHSAFVLSHPFLSGTSTYTLISPFRPTSRSSTCSPRATLTNPPPRVA
GGGRAPTADNFDRYDGKCRKAFTELASDPNYTAV*
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mRNA from alignment at NODE_1174_length_13036_cov_4.454847:11895..12207-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9664.t1 ID=Gcaud9664.t1|Name=Gcaud9664.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=313bp|location=Sequence derived from alignment at NODE_1174_length_13036_cov_4.454847:11895..12207- (Gracilaria caudata M_176_S67 male)
ATGACACCGCCACATTCTGCATTCGTCCTTTCTCACCCTTTCCTTTCGGG
CACTTCCACCTATACCCTCATCAGCCCGTTTCGCCCTACCTCCCGTAGTT
CTACATGTAGCCCGCGTGCCACTTTGACTAATCCGCCTCCACGCGTGGCC
GGTGGTGGACGAGCCCCCACGGCTGACAACTTTGATCGATATGATGGAAA
ATGTCGTAAAGCCTTTACTGAGCTCGCGTCTGATCCCAACGTACGTCTCG
TGCCAATATGGAGGAAGCTTTTCGCCGATCTTCTCACCCCTGTCGTAGTA
TACCGCTGTCTAG
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Coding sequence (CDS) from alignment at NODE_1174_length_13036_cov_4.454847:11895..12207-

>Gcaud9664.t1 ID=Gcaud9664.t1|Name=Gcaud9664.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=255bp|location=Sequence derived from alignment at NODE_1174_length_13036_cov_4.454847:11895..12207- (Gracilaria caudata M_176_S67 male)
ATGACACCGCCACATTCTGCATTCGTCCTTTCTCACCCTTTCCTTTCGGG
CACTTCCACCTATACCCTCATCAGCCCGTTTCGCCCTACCTCCCGTAGTT
CTACATGTAGCCCGCGTGCCACTTTGACTAATCCGCCTCCACGCGTGGCC
GGTGGTGGACGAGCCCCCACGGCTGACAACTTTGATCGATATGATGGAAA
ATGTCGTAAAGCCTTTACTGAGCTCGCGTCTGATCCCAACTATACCGCTG
TCTAG
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