Gcaud9656.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9656.t2
Unique Name	Gcaud9656.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_429_length_25870_cov_4.602971	contig	NODE_429_length_25870_cov_4.602971:10298..13192 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9656	Gcaud9656	Gracilaria caudata M_176_S67 male	gene	NODE_429_length_25870_cov_4.602971 10298..13192 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9656.t2	Gcaud9656.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_429_length_25870_cov_4.602971 10298..13192 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9656.t2.start1	Gcaud9656.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_429_length_25870_cov_4.602971 10298..10300 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9656.t2.CDS1	Gcaud9656.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_429_length_25870_cov_4.602971 10298..11875 +
Gcaud9656.t2.CDS2	Gcaud9656.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_429_length_25870_cov_4.602971 12588..12648 +
Gcaud9656.t2.CDS3	Gcaud9656.t2.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_429_length_25870_cov_4.602971 12888..12935 +
Gcaud9656.t2.CDS4	Gcaud9656.t2.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_429_length_25870_cov_4.602971 12983..13076 +
Gcaud9656.t2.CDS5	Gcaud9656.t2.CDS5	Gracilaria caudata M_176_S67 male	CDS	NODE_429_length_25870_cov_4.602971 13186..13192 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9656.t2.exon1	Gcaud9656.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_429_length_25870_cov_4.602971 10298..11875 +
Gcaud9656.t2.exon2	Gcaud9656.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_429_length_25870_cov_4.602971 12588..12648 +
Gcaud9656.t2.exon3	Gcaud9656.t2.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_429_length_25870_cov_4.602971 12888..12935 +
Gcaud9656.t2.exon4	Gcaud9656.t2.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_429_length_25870_cov_4.602971 12983..13076 +
Gcaud9656.t2.exon5	Gcaud9656.t2.exon5	Gracilaria caudata M_176_S67 male	exon	NODE_429_length_25870_cov_4.602971 13186..13192 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9656.t2.intron1	Gcaud9656.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_429_length_25870_cov_4.602971 11876..12587 +
Gcaud9656.t2.intron2	Gcaud9656.t2.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_429_length_25870_cov_4.602971 12649..12887 +
Gcaud9656.t2.intron3	Gcaud9656.t2.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_429_length_25870_cov_4.602971 12936..12982 +
Gcaud9656.t2.intron4	Gcaud9656.t2.intron4	Gracilaria caudata M_176_S67 male	intron	NODE_429_length_25870_cov_4.602971 13077..13185 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9656.t2.stop1	Gcaud9656.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_429_length_25870_cov_4.602971 13190..13192 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_429_length_25870_cov_4.602971:10298..13192+
coding sequence from alignment at NODE_429_length_25870_cov_4.602971:10298..13192+

mRNA sequence

>Gcaud9656.t2 ID=Gcaud9656.t2|Name=Gcaud9656.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=596bp
MVSDIISDISEDFIGKQNGLQMEMNSWLHRCNFQFVEVLKTFCYGEDILS
KKFGWSGNYEYRVVREDFITTSDEEENQPLAKLEKFLKNSQRDMALARVV
TGGDQSVLLLCKPQNVDETGWEEKYILPVCNLDRFRTLLWPIRQNDYLYY
TRFNITDDLEILDDRERKLTRSLRRTKTVDTSKFARLTEQEARLVLFAGE
DVDDEELYIKLGGEDLMKRKVWQTLSRKLRELHESVSSCNDFRVQEAIQR
LESFISYIKIFGDVVHCLCGNRMTRNLARYWSNEDVGVIIQDSICAHQDN
TFVNGGTSTSGEHKKHYALDHVVMPITKNYRWADQVMLVPPGGYQFKDLL
KPQVTVIRDGKEVKYAFSECGRLEIDGPFRHFRRTFDIPKVKITGEVKLG
PVKVAVEQEFQPGTRRATKDEARILDLLTSNTEPRLARLALASAHRQGLT
TNETGACYLPKATDGLMLEHVDAIDLRVFSGMDAYYRSMDKKLFLKLEGR
QLELTHTRDSFYHVHDVTFNKLECSLKKKKKKKTIVACTSQYARALEKTA
IISTTNTMNELQPKLPAEKDVIRHDRYLFALPSSIAGISSQRKGK*

spliced messenger RNA

>Gcaud9656.t2 ID=Gcaud9656.t2|Name=Gcaud9656.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_429_length_25870_cov_4.602971:10298..13192+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCGGACATCATAAGTGACATTTCCGAAGACTTCATTGGAAAACA
AAATGGGCTTCAAATGGAGATGAACTCATGGTTACACAGATGTAATTTCC
AATTCGTGGAGGTGTTGAAAACATTTTGTTACGGAGAGGATATTCTATCA
AAGAAGTTTGGCTGGTCAGGTAACTATGAGTATCGCGTTGTCAGGGAAGA
CTTTATCACAACAAGTGATGAGGAGGAAAATCAACCACTTGCAAAGCTTG
AGAAGTTCCTTAAGAATTCACAGCGTGACATGGCCCTCGCAAGGGTTGTA
ACCGGTGGCGACCAGAGTGTGCTTTTACTTTGCAAACCACAGAATGTCGA
TGAGACTGGTTGGGAGGAAAAGTATATTTTACCGGTGTGCAACTTGGATA
GATTCAGGACCTTACTCTGGCCAATCAGGCAGAATGATTATCTGTACTAC
ACAAGGTTTAATATCACAGATGACCTTGAAATACTGGACGACAGGGAAAG
AAAACTGACCCGTTCTCTACGCAGGACAAAAACTGTGGACACTTCGAAGT
TTGCAAGGCTGACTGAGCAAGAGGCAAGACTAGTGTTGTTCGCCGGCGAA
GACGTTGATGATGAGGAGCTCTACATCAAGTTAGGTGGCGAAGATCTCAT
GAAAAGAAAAGTATGGCAGACTCTTAGCAGAAAACTACGGGAATTACATG
AATCAGTTTCGTCATGTAATGATTTCAGGGTGCAGGAGGCCATTCAAAGG
CTAGAAAGTTTCATTTCGTACATTAAGATTTTTGGGGATGTCGTTCACTG
CCTTTGTGGAAACAGAATGACAAGAAACTTAGCGAGATACTGGAGCAATG
AGGATGTCGGCGTCATAATACAGGACTCAATATGTGCACATCAGGACAAT
ACCTTCGTGAATGGTGGAACATCCACATCTGGTGAACACAAGAAACACTA
TGCCTTGGACCATGTAGTCATGCCAATTACTAAGAACTATCGTTGGGCCG
ATCAAGTTATGCTCGTCCCTCCCGGTGGCTACCAGTTCAAAGATCTGCTG
AAGCCTCAAGTGACAGTCATCCGCGATGGCAAGGAAGTGAAGTATGCTTT
TTCGGAGTGTGGGCGTTTGGAAATCGATGGGCCGTTCAGACATTTTCGAC
GCACTTTTGATATACCGAAAGTGAAGATAACGGGGGAAGTCAAACTGGGA
CCAGTGAAAGTTGCGGTAGAGCAGGAATTTCAACCTGGCACAAGGAGGGC
GACGAAAGACGAAGCGCGAATTCTCGACTTACTCACGTCCAACACAGAGC
CTCGGCTAGCAAGATTAGCTCTTGCGTCGGCGCACAGACAGGGTTTAACT
ACTAATGAAACAGGGGCTTGCTACCTTCCTAAGGCAACTGACGGACTCAT
GTTGGAGCACGTTGACGCGATCGATTTAAGAGTCTTCAGTGGAATGGACG
CATATTACCGCTCCATGGACAAGAAACTTTTCCTCAAACTTGAAGGTCGA
CAGCTAGAACTGACTCATACTAGGGACTCGTTTTACCATGTACACGACGT
GACATTTAACAAATTGGAATGTTCATTGaagaagaaaaagaAGAAGAAGA
CCATTGTCGCTTGTACATCGCAGTATGCAAGGGCATTAGAAAAGACTGCC
ATAATTTCGACAACCAATACAATGAATGAACTGCAACCTAAGCTTCCCGC
TGAAAAGGACGTAATTCGCCATGATCGATACTTGTTTGCGTTACCAAGCT
CAATAGCTGGTATTTCAAGCCAACGCAAGGGAAAATAA

protein sequence of Gcaud9656.t2

>Gcaud9656.t2 ID=Gcaud9656.t2|Name=Gcaud9656.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=596bp
MVSDIISDISEDFIGKQNGLQMEMNSWLHRCNFQFVEVLKTFCYGEDILS
KKFGWSGNYEYRVVREDFITTSDEEENQPLAKLEKFLKNSQRDMALARVV
TGGDQSVLLLCKPQNVDETGWEEKYILPVCNLDRFRTLLWPIRQNDYLYY
TRFNITDDLEILDDRERKLTRSLRRTKTVDTSKFARLTEQEARLVLFAGE
DVDDEELYIKLGGEDLMKRKVWQTLSRKLRELHESVSSCNDFRVQEAIQR
LESFISYIKIFGDVVHCLCGNRMTRNLARYWSNEDVGVIIQDSICAHQDN
TFVNGGTSTSGEHKKHYALDHVVMPITKNYRWADQVMLVPPGGYQFKDLL
KPQVTVIRDGKEVKYAFSECGRLEIDGPFRHFRRTFDIPKVKITGEVKLG
PVKVAVEQEFQPGTRRATKDEARILDLLTSNTEPRLARLALASAHRQGLT
TNETGACYLPKATDGLMLEHVDAIDLRVFSGMDAYYRSMDKKLFLKLEGR
QLELTHTRDSFYHVHDVTFNKLECSLKKKKKKKTIVACTSQYARALEKTA
IISTTNTMNELQPKLPAEKDVIRHDRYLFALPSSIAGISSQRKGK*

mRNA from alignment at NODE_429_length_25870_cov_4.602971:10298..13192+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9656.t2 ID=Gcaud9656.t2|Name=Gcaud9656.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2895bp|location=Sequence derived from alignment at NODE_429_length_25870_cov_4.602971:10298..13192+ (Gracilaria caudata M_176_S67 male)
ATGGTCTCGGACATCATAAGTGACATTTCCGAAGACTTCATTGGAAAACA
AAATGGGCTTCAAATGGAGATGAACTCATGGTTACACAGATGTAATTTCC
AATTCGTGGAGGTGTTGAAAACATTTTGTTACGGAGAGGATATTCTATCA
AAGAAGTTTGGCTGGTCAGGTAACTATGAGTATCGCGTTGTCAGGGAAGA
CTTTATCACAACAAGTGATGAGGAGGAAAATCAACCACTTGCAAAGCTTG
AGAAGTTCCTTAAGAATTCACAGCGTGACATGGCCCTCGCAAGGGTTGTA
ACCGGTGGCGACCAGAGTGTGCTTTTACTTTGCAAACCACAGAATGTCGA
TGAGACTGGTTGGGAGGAAAAGTATATTTTACCGGTGTGCAACTTGGATA
GATTCAGGACCTTACTCTGGCCAATCAGGCAGAATGATTATCTGTACTAC
ACAAGGTTTAATATCACAGATGACCTTGAAATACTGGACGACAGGGAAAG
AAAACTGACCCGTTCTCTACGCAGGACAAAAACTGTGGACACTTCGAAGT
TTGCAAGGCTGACTGAGCAAGAGGCAAGACTAGTGTTGTTCGCCGGCGAA
GACGTTGATGATGAGGAGCTCTACATCAAGTTAGGTGGCGAAGATCTCAT
GAAAAGAAAAGTATGGCAGACTCTTAGCAGAAAACTACGGGAATTACATG
AATCAGTTTCGTCATGTAATGATTTCAGGGTGCAGGAGGCCATTCAAAGG
CTAGAAAGTTTCATTTCGTACATTAAGATTTTTGGGGATGTCGTTCACTG
CCTTTGTGGAAACAGAATGACAAGAAACTTAGCGAGATACTGGAGCAATG
AGGATGTCGGCGTCATAATACAGGACTCAATATGTGCACATCAGGACAAT
ACCTTCGTGAATGGTGGAACATCCACATCTGGTGAACACAAGAAACACTA
TGCCTTGGACCATGTAGTCATGCCAATTACTAAGAACTATCGTTGGGCCG
ATCAAGTTATGCTCGTCCCTCCCGGTGGCTACCAGTTCAAAGATCTGCTG
AAGCCTCAAGTGACAGTCATCCGCGATGGCAAGGAAGTGAAGTATGCTTT
TTCGGAGTGTGGGCGTTTGGAAATCGATGGGCCGTTCAGACATTTTCGAC
GCACTTTTGATATACCGAAAGTGAAGATAACGGGGGAAGTCAAACTGGGA
CCAGTGAAAGTTGCGGTAGAGCAGGAATTTCAACCTGGCACAAGGAGGGC
GACGAAAGACGAAGCGCGAATTCTCGACTTACTCACGTCCAACACAGAGC
CTCGGCTAGCAAGATTAGCTCTTGCGTCGGCGCACAGACAGGGTTTAACT
ACTAATGAAACAGGGGCTTGCTACCTTCCTAAGGCAACTGACGGACTCAT
GTTGGAGCACGTTGACGCGATCGATTTAAGAGTCTTCAGTGGAATGGACG
CATATTACCGCTCCATGGACAAGAAACTTTTCCTCAAACTTGAAGGTCGA
CAGCTAGAACTGACTCATACTAGGGACTCGTTTTACCATGTACACGACGT
GACATTTAACAAATTGGAATGTTCATTGGTTCGCCTAGAGATTGAAGGTG
GTTTACTTGGAGGCCCAGGTTCGGCGCCGTGCCACATTGGTTAGAATCTT
CACTTCACCGCTTTTTTTGGGTAGTGGTTTTAGTCGCTTGTTGGAAGTAC
GACGATACCCACAGCGCTCTCGCATGATAGTTTGGATTTTACAGCCATGT
ACATGACACACCACTTTACGACGGTGGTAGCAAACAGGCATACTAATTAC
ATGCTGTTGCGAGAATTAGCGACAGTCTTGGAGCGCACAATATAGCAATT
CAGCGCTCGAGAACGATAAATCCTTAGGAAGATGACTAAGCGTGCTTGTG
AGCATTGATCTTGGTTGATACGTCTTCTTTGAGCTCATGGGTTTAACTGA
GAGAGCAAGCCACATGAGCTCGGCGTGTGATGGTTCACTCTGACAGATGT
CGTCCTGATTTTGACGATGTGACCGTGGAACCCCAGTTGCAAGTGGAGTT
ACTTCTACAGTCCAAAGCTTAGCATGGGTCTCGAGCCCCTGCGGGTTTCT
GCAGAACGAACGCGTCCATTGGCTAAGCCAGGACAAGGGGTGCCACTAAA
ACTTCAGCTTGAGGAGCCGGGTGTATAATCTGCATTGTCGCAGAACACAA
GAATGAAAGGCGGAGCTGTCCATAACACGGTTGTAGACTTGCAGCaagac
gctccgcagtaagttgtaactacgcttatgtgctcataagaagaagaaaa
agaAGAAGAAGACCATTGTCGCTTGTACATCGCAGTATGCAAGGGCATTA
GGTAAGTTAACCAGAGCGAATACTTGTCTGCAAAAGTTGCAAAGGGAGAG
CGCTACCCGTCTTGAAAAATGAGAACACAAATTCGACCGCCAGTGTGCTC
TTATGTCAGCTGCTTCAAAGCTAATCCAATCTCCCTTCGTTGCTCTATTG
CAGCTAACGATGATACTATCATCATGATAGTTTCGAAGTCCGGCATCATT
AGAAAGACTCTTTGCTTCCCAAACTGACTGCCACTTCCAGAAAAGACTGC
CATAATTTCGACAACCAATACAATGAATGAACTGCAACGTTGCGCAATAC
TGAACTGTACAAAGCGCTCCATGTGAAACGTTAAGCTAAGCTTCCCGCTG
AAAAGGACGTAATTCGCCATGATCGATACTTGTTTGCGTTACCAAGCTCA
ATAGCTGGTATTTCAAGCCAACGCAAGGGGTAAGAGGGTTATCAATGGTT
TTAGTGCACATTGAGAGGTTCGGAATGAATCTTAGCACTTGTTTAAGAAA
TCTTTCCTAACCAGAACAGAACTTGTATGCGAACGTAGAAAATAA

Coding sequence (CDS) from alignment at NODE_429_length_25870_cov_4.602971:10298..13192+

>Gcaud9656.t2 ID=Gcaud9656.t2|Name=Gcaud9656.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1788bp|location=Sequence derived from alignment at NODE_429_length_25870_cov_4.602971:10298..13192+ (Gracilaria caudata M_176_S67 male)
ATGGTCTCGGACATCATAAGTGACATTTCCGAAGACTTCATTGGAAAACA
AAATGGGCTTCAAATGGAGATGAACTCATGGTTACACAGATGTAATTTCC
AATTCGTGGAGGTGTTGAAAACATTTTGTTACGGAGAGGATATTCTATCA
AAGAAGTTTGGCTGGTCAGGTAACTATGAGTATCGCGTTGTCAGGGAAGA
CTTTATCACAACAAGTGATGAGGAGGAAAATCAACCACTTGCAAAGCTTG
AGAAGTTCCTTAAGAATTCACAGCGTGACATGGCCCTCGCAAGGGTTGTA
ACCGGTGGCGACCAGAGTGTGCTTTTACTTTGCAAACCACAGAATGTCGA
TGAGACTGGTTGGGAGGAAAAGTATATTTTACCGGTGTGCAACTTGGATA
GATTCAGGACCTTACTCTGGCCAATCAGGCAGAATGATTATCTGTACTAC
ACAAGGTTTAATATCACAGATGACCTTGAAATACTGGACGACAGGGAAAG
AAAACTGACCCGTTCTCTACGCAGGACAAAAACTGTGGACACTTCGAAGT
TTGCAAGGCTGACTGAGCAAGAGGCAAGACTAGTGTTGTTCGCCGGCGAA
GACGTTGATGATGAGGAGCTCTACATCAAGTTAGGTGGCGAAGATCTCAT
GAAAAGAAAAGTATGGCAGACTCTTAGCAGAAAACTACGGGAATTACATG
AATCAGTTTCGTCATGTAATGATTTCAGGGTGCAGGAGGCCATTCAAAGG
CTAGAAAGTTTCATTTCGTACATTAAGATTTTTGGGGATGTCGTTCACTG
CCTTTGTGGAAACAGAATGACAAGAAACTTAGCGAGATACTGGAGCAATG
AGGATGTCGGCGTCATAATACAGGACTCAATATGTGCACATCAGGACAAT
ACCTTCGTGAATGGTGGAACATCCACATCTGGTGAACACAAGAAACACTA
TGCCTTGGACCATGTAGTCATGCCAATTACTAAGAACTATCGTTGGGCCG
ATCAAGTTATGCTCGTCCCTCCCGGTGGCTACCAGTTCAAAGATCTGCTG
AAGCCTCAAGTGACAGTCATCCGCGATGGCAAGGAAGTGAAGTATGCTTT
TTCGGAGTGTGGGCGTTTGGAAATCGATGGGCCGTTCAGACATTTTCGAC
GCACTTTTGATATACCGAAAGTGAAGATAACGGGGGAAGTCAAACTGGGA
CCAGTGAAAGTTGCGGTAGAGCAGGAATTTCAACCTGGCACAAGGAGGGC
GACGAAAGACGAAGCGCGAATTCTCGACTTACTCACGTCCAACACAGAGC
CTCGGCTAGCAAGATTAGCTCTTGCGTCGGCGCACAGACAGGGTTTAACT
ACTAATGAAACAGGGGCTTGCTACCTTCCTAAGGCAACTGACGGACTCAT
GTTGGAGCACGTTGACGCGATCGATTTAAGAGTCTTCAGTGGAATGGACG
CATATTACCGCTCCATGGACAAGAAACTTTTCCTCAAACTTGAAGGTCGA
CAGCTAGAACTGACTCATACTAGGGACTCGTTTTACCATGTACACGACGT
GACATTTAACAAATTGGAATGTTCATTGaagaagaaaaagaAGAAGAAGA
CCATTGTCGCTTGTACATCGCAGTATGCAAGGGCATTAGAAAAGACTGCC
ATAATTTCGACAACCAATACAATGAATGAACTGCAACCTAAGCTTCCCGC
TGAAAAGGACGTAATTCGCCATGATCGATACTTGTTTGCGTTACCAAGCT
CAATAGCTGGTATTTCAAGCCAACGCAAGGGAAAATAA