Gcaud9577.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9577.t1
Unique Name	Gcaud9577.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	480

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_247_length_34315_cov_4.656002	contig	NODE_247_length_34315_cov_4.656002:19558..20997 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705666.1
Preferred name	CYB5D2
PFAMs	Cyt-b5
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00109,RC00110,RC00158
KEGG ko	ko:K00287
KEGG Reaction	R00936,R00937,R00939,R00940,R02235,R02236,R11765
KEGG Pathway	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523
KEGG Module	M00126,M00840
GOs	GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0012505,GO:0016020,GO:0020037,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046906,GO:0048037,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0097159,GO:1901363,GO:2000026
Evalue	1.15e-149
EggNOG OGs	KOG1110@1\|root,KOG1108@2759\|Eukaryota
EC	1.5.1.3
Description	heme binding
COG category	K
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9577	Gcaud9577	Gracilaria caudata M_176_S67 male	gene	NODE_247_length_34315_cov_4.656002 19558..20997 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9577.t1.stop1	Gcaud9577.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_247_length_34315_cov_4.656002 19558..19560 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9577.t1.CDS1	Gcaud9577.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_247_length_34315_cov_4.656002 19558..20997 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9577.t1.exon1	Gcaud9577.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_247_length_34315_cov_4.656002 19558..20997 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9577.t1.start1	Gcaud9577.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_247_length_34315_cov_4.656002 20995..20997 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9577.t1	Gcaud9577.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_247_length_34315_cov_4.656002 19558..20997 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_247_length_34315_cov_4.656002:19558..20997-
coding sequence from alignment at NODE_247_length_34315_cov_4.656002:19558..20997-

mRNA sequence

>Gcaud9577.t1 ID=Gcaud9577.t1|Name=Gcaud9577.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp
MAKHSSAFVNIVPILANRSTRTTSFIPAVSERLSKSLKPSGHATKRPSRI
VTTTAVLSEQPFDQTTPQSFPGGFPNSGVFSVNPELLESDSEENLRGFVK
TRGSLIPGQEFVFWWVGDIYDLIDDQPTKHLFSFEGYNIGRMVRVDGGWR
LLTREVGLYKHPRTGRILDEWQNPHTGATNECVHVWNDPVNQQFLLNGPR
GSFKVPTTTYEDDVYWHAEVFLNYKSPLPRSDFPENAASDMYQSAEMFQF
FSTRQELQSEKPSADCVISWVRVGQWLPWMEMGDKPGRLVYHCRGRKLVN
GFSDLPNHVQTYILNNKPEYSSAPTDFTTPNETSWTYMRKLLANRGAPRA
DGRMARPASAELQLTRPGTEIKQPPKELCREELRQYDGRDAGLPVLLAVD
GDVFDVSAAKRHYGPGETYHCLVGRDASWALVSGDLSEDALRNCDANLKD
RLDEKQVSDLKHWKEFFAKNYKRVSTLVD*

spliced messenger RNA

>Gcaud9577.t1 ID=Gcaud9577.t1|Name=Gcaud9577.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:19558..20997- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAGCACAGTTCTGCTTTCGTTAACATCGTGCCGATTCTGGCCAA
CCGAAGCACAAGAACTACTTCATTCATCCCCGCCGTTTCTGAGCGCCTTT
CGAAATCCCTCAAACCCAGTGGTCATGCTACGAAACGACCATCAAGAATC
GTCACAACTACGGCTGTGCTTTCGGAACAGCCATTCGATCAAACCACACC
GCAGTCCTTCCCAGGGGGTTTTCCGAACTCTGGCGTGTTCAGCGTAAATC
CAGAGCTCCTCGAAAGCGACAGTGAAGAAAACTTGCGCGGGTTCGTCAAG
ACCAGAGGAAGTCTTATCCCGGGTCAAGAGTTCGTGTTTTGGTGGGTAGG
TGACATATATGATCTCATTGACGATCAACCCACGAAACATCTTTTCTCAT
TTGAAGGTTATAACATTGGGCGTATGGTTCGCGTGGATGGTGGGTGGAGA
CTACTTACAAGAGAAGTAGGATTATACAAGCATCCCCGCACGGGTCGTAT
TCTTGATGAGTGGCAGAATCCGCACACTGGAGCCACAAATGAATGCGTGC
ATGTTTGGAACGACCCTGTCAATCAACAGTTTTTGTTGAATGGTCCTAGG
GGGTCGTTCAAGGTTCCCACTACAACATATGAAGACGACGTTTACTGGCA
CGCCGAAGTGTTCCTGAATTACAAGTCGCCACTGCCTCGATCCGACTTCC
CAGAGAACGCCGCCTCTGATATGTATCAATCTGCCGAAATGTTCCAATTC
TTTTCCACTAGGCAGGAATTGCAGTCTGAAAAACCTAGTGCGGACTGTGT
TATTAGCTGGGTGAGAGTTGGACAATGGCTTCCATGGATGGAGATGGGTG
ACAAACCTGGTCGTCTTGTGTATCACTGCCGTGGAAGAAAACTTGTAAAT
GGCTTCTCAGACCTTCCTAACCATGTACAGACATACATTCTCAATAACAA
ACCAGAGTACAGCTCTGCACCCACTGATTTCACGACTCCGAATGAGACGA
GCTGGACGTACATGCGAAAGCTGCTCGCTAACCGTGGGGCCCCTCGTGCG
GATGGTCGAATGGCTCGCCCTGCGTCCGCAGAATTACAACTCACTCGACC
TGGCACCGAAATTAAGCAACCACCAAAAGAACTATGCCGAGAGGAATTGC
GACAGTATGACGGTAGGGATGCAGGGTTACCGGTGCTTTTGGCCGTTGAT
GGAGATGTGTTCGACGTGAGCGCTGCCAAGAGGCACTACGGTCCGGGTGA
AACTTATCACTGCTTGGTTGGACGTGACGCTAGCTGGGCTCTTGTGAGCG
GCGATCTTTCTGAAGATGCGCTTCGGAATTGTGATGCGAATCTGAAAGAT
CGACTTGATGAGAAGCAAGTTTCCGATTTGAAGCACTGGAAGGAATTCTT
CGCTAAGAACTATAAGCGCGTCTCGACACTTGTTGACTGA

protein sequence of Gcaud9577.t1

>Gcaud9577.t1 ID=Gcaud9577.t1|Name=Gcaud9577.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=480bp
MAKHSSAFVNIVPILANRSTRTTSFIPAVSERLSKSLKPSGHATKRPSRI
VTTTAVLSEQPFDQTTPQSFPGGFPNSGVFSVNPELLESDSEENLRGFVK
TRGSLIPGQEFVFWWVGDIYDLIDDQPTKHLFSFEGYNIGRMVRVDGGWR
LLTREVGLYKHPRTGRILDEWQNPHTGATNECVHVWNDPVNQQFLLNGPR
GSFKVPTTTYEDDVYWHAEVFLNYKSPLPRSDFPENAASDMYQSAEMFQF
FSTRQELQSEKPSADCVISWVRVGQWLPWMEMGDKPGRLVYHCRGRKLVN
GFSDLPNHVQTYILNNKPEYSSAPTDFTTPNETSWTYMRKLLANRGAPRA
DGRMARPASAELQLTRPGTEIKQPPKELCREELRQYDGRDAGLPVLLAVD
GDVFDVSAAKRHYGPGETYHCLVGRDASWALVSGDLSEDALRNCDANLKD
RLDEKQVSDLKHWKEFFAKNYKRVSTLVD*

mRNA from alignment at NODE_247_length_34315_cov_4.656002:19558..20997-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9577.t1 ID=Gcaud9577.t1|Name=Gcaud9577.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:19558..20997- (Gracilaria caudata M_176_S67 male)
ATGGCGAAGCACAGTTCTGCTTTCGTTAACATCGTGCCGATTCTGGCCAA
CCGAAGCACAAGAACTACTTCATTCATCCCCGCCGTTTCTGAGCGCCTTT
CGAAATCCCTCAAACCCAGTGGTCATGCTACGAAACGACCATCAAGAATC
GTCACAACTACGGCTGTGCTTTCGGAACAGCCATTCGATCAAACCACACC
GCAGTCCTTCCCAGGGGGTTTTCCGAACTCTGGCGTGTTCAGCGTAAATC
CAGAGCTCCTCGAAAGCGACAGTGAAGAAAACTTGCGCGGGTTCGTCAAG
ACCAGAGGAAGTCTTATCCCGGGTCAAGAGTTCGTGTTTTGGTGGGTAGG
TGACATATATGATCTCATTGACGATCAACCCACGAAACATCTTTTCTCAT
TTGAAGGTTATAACATTGGGCGTATGGTTCGCGTGGATGGTGGGTGGAGA
CTACTTACAAGAGAAGTAGGATTATACAAGCATCCCCGCACGGGTCGTAT
TCTTGATGAGTGGCAGAATCCGCACACTGGAGCCACAAATGAATGCGTGC
ATGTTTGGAACGACCCTGTCAATCAACAGTTTTTGTTGAATGGTCCTAGG
GGGTCGTTCAAGGTTCCCACTACAACATATGAAGACGACGTTTACTGGCA
CGCCGAAGTGTTCCTGAATTACAAGTCGCCACTGCCTCGATCCGACTTCC
CAGAGAACGCCGCCTCTGATATGTATCAATCTGCCGAAATGTTCCAATTC
TTTTCCACTAGGCAGGAATTGCAGTCTGAAAAACCTAGTGCGGACTGTGT
TATTAGCTGGGTGAGAGTTGGACAATGGCTTCCATGGATGGAGATGGGTG
ACAAACCTGGTCGTCTTGTGTATCACTGCCGTGGAAGAAAACTTGTAAAT
GGCTTCTCAGACCTTCCTAACCATGTACAGACATACATTCTCAATAACAA
ACCAGAGTACAGCTCTGCACCCACTGATTTCACGACTCCGAATGAGACGA
GCTGGACGTACATGCGAAAGCTGCTCGCTAACCGTGGGGCCCCTCGTGCG
GATGGTCGAATGGCTCGCCCTGCGTCCGCAGAATTACAACTCACTCGACC
TGGCACCGAAATTAAGCAACCACCAAAAGAACTATGCCGAGAGGAATTGC
GACAGTATGACGGTAGGGATGCAGGGTTACCGGTGCTTTTGGCCGTTGAT
GGAGATGTGTTCGACGTGAGCGCTGCCAAGAGGCACTACGGTCCGGGTGA
AACTTATCACTGCTTGGTTGGACGTGACGCTAGCTGGGCTCTTGTGAGCG
GCGATCTTTCTGAAGATGCGCTTCGGAATTGTGATGCGAATCTGAAAGAT
CGACTTGATGAGAAGCAAGTTTCCGATTTGAAGCACTGGAAGGAATTCTT
CGCTAAGAACTATAAGCGCGTCTCGACACTTGTTGACTGA

Coding sequence (CDS) from alignment at NODE_247_length_34315_cov_4.656002:19558..20997-

>Gcaud9577.t1 ID=Gcaud9577.t1|Name=Gcaud9577.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1440bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:19558..20997- (Gracilaria caudata M_176_S67 male)
ATGGCGAAGCACAGTTCTGCTTTCGTTAACATCGTGCCGATTCTGGCCAA
CCGAAGCACAAGAACTACTTCATTCATCCCCGCCGTTTCTGAGCGCCTTT
CGAAATCCCTCAAACCCAGTGGTCATGCTACGAAACGACCATCAAGAATC
GTCACAACTACGGCTGTGCTTTCGGAACAGCCATTCGATCAAACCACACC
GCAGTCCTTCCCAGGGGGTTTTCCGAACTCTGGCGTGTTCAGCGTAAATC
CAGAGCTCCTCGAAAGCGACAGTGAAGAAAACTTGCGCGGGTTCGTCAAG
ACCAGAGGAAGTCTTATCCCGGGTCAAGAGTTCGTGTTTTGGTGGGTAGG
TGACATATATGATCTCATTGACGATCAACCCACGAAACATCTTTTCTCAT
TTGAAGGTTATAACATTGGGCGTATGGTTCGCGTGGATGGTGGGTGGAGA
CTACTTACAAGAGAAGTAGGATTATACAAGCATCCCCGCACGGGTCGTAT
TCTTGATGAGTGGCAGAATCCGCACACTGGAGCCACAAATGAATGCGTGC
ATGTTTGGAACGACCCTGTCAATCAACAGTTTTTGTTGAATGGTCCTAGG
GGGTCGTTCAAGGTTCCCACTACAACATATGAAGACGACGTTTACTGGCA
CGCCGAAGTGTTCCTGAATTACAAGTCGCCACTGCCTCGATCCGACTTCC
CAGAGAACGCCGCCTCTGATATGTATCAATCTGCCGAAATGTTCCAATTC
TTTTCCACTAGGCAGGAATTGCAGTCTGAAAAACCTAGTGCGGACTGTGT
TATTAGCTGGGTGAGAGTTGGACAATGGCTTCCATGGATGGAGATGGGTG
ACAAACCTGGTCGTCTTGTGTATCACTGCCGTGGAAGAAAACTTGTAAAT
GGCTTCTCAGACCTTCCTAACCATGTACAGACATACATTCTCAATAACAA
ACCAGAGTACAGCTCTGCACCCACTGATTTCACGACTCCGAATGAGACGA
GCTGGACGTACATGCGAAAGCTGCTCGCTAACCGTGGGGCCCCTCGTGCG
GATGGTCGAATGGCTCGCCCTGCGTCCGCAGAATTACAACTCACTCGACC
TGGCACCGAAATTAAGCAACCACCAAAAGAACTATGCCGAGAGGAATTGC
GACAGTATGACGGTAGGGATGCAGGGTTACCGGTGCTTTTGGCCGTTGAT
GGAGATGTGTTCGACGTGAGCGCTGCCAAGAGGCACTACGGTCCGGGTGA
AACTTATCACTGCTTGGTTGGACGTGACGCTAGCTGGGCTCTTGTGAGCG
GCGATCTTTCTGAAGATGCGCTTCGGAATTGTGATGCGAATCTGAAAGAT
CGACTTGATGAGAAGCAAGTTTCCGATTTGAAGCACTGGAAGGAATTCTT
CGCTAAGAACTATAAGCGCGTCTCGACACTTGTTGACTGA