Gcaud9560.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9560.t1
Unique NameGcaud9560.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_388_length_27163_cov_4.403295contigNODE_388_length_27163_cov_4.403295:9250..9768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9560Gcaud9560Gracilaria caudata M_176_S67 malegeneNODE_388_length_27163_cov_4.403295 9250..9768 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9560.t1.stop1Gcaud9560.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_388_length_27163_cov_4.403295 9250..9252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9560.t1.CDS1Gcaud9560.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_388_length_27163_cov_4.403295 9250..9768 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9560.t1.exon1Gcaud9560.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_388_length_27163_cov_4.403295 9250..9768 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9560.t1.start1Gcaud9560.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_388_length_27163_cov_4.403295 9766..9768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9560.t1Gcaud9560.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_388_length_27163_cov_4.403295 9250..9768 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9560.t1 ID=Gcaud9560.t1|Name=Gcaud9560.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=173bp
MDKTTEDEMERRLRETFDKRVPEGWFDWRGLQTNGTFFEHSSAPGSPFNC
LFVDEAQKQNCVEHLCKQSSAPEAEGDAQRTNGEKAPANEDRPRAEQNEA
SRSDDDDGGGGEEDDEDDEEEDSESDDSDDNAHGLQEDFRQKVLNNRRHQ
ELQLRRQAAEQRDDAREDESKR*
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spliced messenger RNA

>Gcaud9560.t1 ID=Gcaud9560.t1|Name=Gcaud9560.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:9250..9768- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGACAACGGAAGACGAGATGGAGCGTCGGCTGCGAGAAACTTT
CGACAAGAGGGTTCCGGAGGGATGGTTCGATTGGCGTGGTTTACAAACTA
ATGGCACCTTCTTTGAACACAGCTCTGCGCCAGGCTCGCCGTTCAACTGT
CTGTTCGTGGATGAGGCGCAGAAGCAAAACTGCGTAGAACATCTTTGCAA
GCAGTCGTCCGCGCCCGAAGCGGAGGGCGACGCACAGCGCACGAACGGCG
AAAAAGCTCCCGCCAACGAAGACAGGCCGCGCGCGGAGCAGAACGAGGCG
AGCAGAAGCGACGACGACGACGGCGGAGGTGGAGAGGAAGACGACGAGGA
CGATGAAGAAGAGGACTCTGAATCAGACGACAGCGATGACAACGCACACG
GTCTACAAGAGGATTTCAGACAAAAGGTTCTGAACAACAGACGTCACCAG
GAGCTGCAACTGCGGCGCCAAGCTGCGGAGCAGCGAGATGACGCGCGCGA
AGATGAGTCGAAGCGGTGA
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protein sequence of Gcaud9560.t1

>Gcaud9560.t1 ID=Gcaud9560.t1|Name=Gcaud9560.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=173bp
MDKTTEDEMERRLRETFDKRVPEGWFDWRGLQTNGTFFEHSSAPGSPFNC
LFVDEAQKQNCVEHLCKQSSAPEAEGDAQRTNGEKAPANEDRPRAEQNEA
SRSDDDDGGGGEEDDEDDEEEDSESDDSDDNAHGLQEDFRQKVLNNRRHQ
ELQLRRQAAEQRDDAREDESKR*
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mRNA from alignment at NODE_388_length_27163_cov_4.403295:9250..9768-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9560.t1 ID=Gcaud9560.t1|Name=Gcaud9560.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:9250..9768- (Gracilaria caudata M_176_S67 male)
ATGGACAAGACAACGGAAGACGAGATGGAGCGTCGGCTGCGAGAAACTTT
CGACAAGAGGGTTCCGGAGGGATGGTTCGATTGGCGTGGTTTACAAACTA
ATGGCACCTTCTTTGAACACAGCTCTGCGCCAGGCTCGCCGTTCAACTGT
CTGTTCGTGGATGAGGCGCAGAAGCAAAACTGCGTAGAACATCTTTGCAA
GCAGTCGTCCGCGCCCGAAGCGGAGGGCGACGCACAGCGCACGAACGGCG
AAAAAGCTCCCGCCAACGAAGACAGGCCGCGCGCGGAGCAGAACGAGGCG
AGCAGAAGCGACGACGACGACGGCGGAGGTGGAGAGGAAGACGACGAGGA
CGATGAAGAAGAGGACTCTGAATCAGACGACAGCGATGACAACGCACACG
GTCTACAAGAGGATTTCAGACAAAAGGTTCTGAACAACAGACGTCACCAG
GAGCTGCAACTGCGGCGCCAAGCTGCGGAGCAGCGAGATGACGCGCGCGA
AGATGAGTCGAAGCGGTGA
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Coding sequence (CDS) from alignment at NODE_388_length_27163_cov_4.403295:9250..9768-

>Gcaud9560.t1 ID=Gcaud9560.t1|Name=Gcaud9560.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=519bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:9250..9768- (Gracilaria caudata M_176_S67 male)
ATGGACAAGACAACGGAAGACGAGATGGAGCGTCGGCTGCGAGAAACTTT
CGACAAGAGGGTTCCGGAGGGATGGTTCGATTGGCGTGGTTTACAAACTA
ATGGCACCTTCTTTGAACACAGCTCTGCGCCAGGCTCGCCGTTCAACTGT
CTGTTCGTGGATGAGGCGCAGAAGCAAAACTGCGTAGAACATCTTTGCAA
GCAGTCGTCCGCGCCCGAAGCGGAGGGCGACGCACAGCGCACGAACGGCG
AAAAAGCTCCCGCCAACGAAGACAGGCCGCGCGCGGAGCAGAACGAGGCG
AGCAGAAGCGACGACGACGACGGCGGAGGTGGAGAGGAAGACGACGAGGA
CGATGAAGAAGAGGACTCTGAATCAGACGACAGCGATGACAACGCACACG
GTCTACAAGAGGATTTCAGACAAAAGGTTCTGAACAACAGACGTCACCAG
GAGCTGCAACTGCGGCGCCAAGCTGCGGAGCAGCGAGATGACGCGCGCGA
AGATGAGTCGAAGCGGTGA
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