Gcaud9558.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9558.t1
Unique NameGcaud9558.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length670
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_388_length_27163_cov_4.403295contigNODE_388_length_27163_cov_4.403295:4972..7248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD08358
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K12307
KEGG TC2.A.1
KEGG Pathwayko04142,map04142
Evalue7.68e-34
EggNOG OGsKOG2325@1|root,KOG2325@2759|Eukaryota
Descriptionmajor facilitator superfamily
COG categoryO
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9558Gcaud9558Gracilaria caudata M_176_S67 malegeneNODE_388_length_27163_cov_4.403295 4972..7248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9558.t1Gcaud9558.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_388_length_27163_cov_4.403295 4972..7248 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9558.t1.stop1Gcaud9558.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_388_length_27163_cov_4.403295 4972..4974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9558.t1.CDS1Gcaud9558.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_388_length_27163_cov_4.403295 4972..5782 -
Gcaud9558.t1.CDS2Gcaud9558.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_388_length_27163_cov_4.403295 5980..6375 -
Gcaud9558.t1.CDS3Gcaud9558.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_388_length_27163_cov_4.403295 6446..7248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9558.t1.exon1Gcaud9558.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_388_length_27163_cov_4.403295 4972..5782 -
Gcaud9558.t1.exon2Gcaud9558.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_388_length_27163_cov_4.403295 5980..6375 -
Gcaud9558.t1.exon3Gcaud9558.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_388_length_27163_cov_4.403295 6446..7248 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9558.t1.intron1Gcaud9558.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_388_length_27163_cov_4.403295 5783..5979 -
Gcaud9558.t1.intron2Gcaud9558.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_388_length_27163_cov_4.403295 6376..6445 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9558.t1.start1Gcaud9558.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_388_length_27163_cov_4.403295 7246..7248 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9558.t1 ID=Gcaud9558.t1|Name=Gcaud9558.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=670bp
MGLSSSSRFTLYLTVFLPCVSFAIVLPSLWPYLHLLGAQKRFLAFVVAIY
SVGEAIGAVYFGWLFSCLATKQVLQQASLLGTLGSLLYLFAYDQRVFGKY
MLLVSRLLCGFWTGGAQAVQQAYLNVCLSKRDITAATVELNTWACLGFVA
GPALALLFVPFPEMHFGAFHFDQFTLPAWFMLLSSVLCVLLYRFGLTEES
DRQHVAQDHMHDMSELDERSALLPLSKQFVEQQAPHGSDLPLLIALVVCN
VAFFVHMFGFALQETVTTPLVQTYYKWSLAAADTLFTCASLATLLTLLLL
RQVSTYVTDRMLTATSLTLGMFGWAFLSPSTLPVHSFIFGFGLVSIAFPL
GRACIMSLVTKLLPNKWQGRGQGVLLAVGAFARIGAPFGAVQVFYVQRGS
SRATRLARFSPTVTAVLIMSFKKVASYTANFEAKQSSQQSPVSEKVSSIA
TKFGAIVDPTAPIPLRSPRKVSHISRQKSAPNVVASEETQHSVHSLASRF
AEPEQKNDTSSQFSSAAAAFREREKNIDGDASKVVGMVRGIDDGVKGETQ
KVSSVARVFESSTVSAGGARYQGAASVALEGNQNEQAVKEAPVKEAPVKE
NADVMTDDEERIARRAFGRAKSVQDTARMFERGVSADIDVGKSAADDDAA
STQEARNRFQDAAKKFGAS*
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spliced messenger RNA

>Gcaud9558.t1 ID=Gcaud9558.t1|Name=Gcaud9558.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:4972..7248- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTGTCTTCTTCGTCGAGGTTCACCTTGTACCTCACCGTGTTCCT
TCCGTGCGTGTCCTTCGCAATTGTGTTGCCGTCGTTATGGCCGTATTTGC
ACCTCCTCGGCGCGCAAAAACGCTTCCTAGCGTTCGTGGTGGCCATCTAT
TCCGTGGGAGAAGCGATTGGAGCCGTGTACTTCGGCTGGCTTTTCTCTTG
TCTCGCCACCAAACAGGTGCTTCAACAGGCCAGTTTGCTAGGCACACTGG
GCTCGTTGCTGTACCTGTTCGCGTACGACCAGCGCGTGTTTGGTAAATAC
ATGCTTCTTGTTTCTAGATTGCTGTGCGGATTCTGGACGGGCGGCGCGCA
GGCGGTGCAGCAGGCGTACCTCAATGTGTGCTTGTCCAAGAGAGATATTA
CTGCTGCCACAGTGGAGCTCAACACATGGGCCTGCCTCGGCTTCGTCGCC
GGTCCGGCTTTGGCTTTGCTGTTCGTTCCGTTTCCTGAAATGCACTTCGG
CGCGTTTCATTTCGACCAGTTCACTTTGCCCGCTTGGTTCATGCTTCTCA
GTTCTGTGTTGTGCGTGTTGCTGTATCGGTTCGGATTGACAGAAGAGAGC
GACAGGCAACATGTCGCGCAAGACCACATGCATGACATGAGTGAACTGGA
CGAAAGAAGCGCATTGCTGCCGCTGTCCAAACAGTTTGTCGAACAACAAG
CGCCCCATGGCTCCGACTTGCCGCTGCTGATCGCGTTAGTGGTTTGCAAT
GTAGCTTTCTTCGTTCATATGTTTGGCTTCGCGCTGCAGGAAACAGTCAC
CACCCCGCTCGTACAGACATACTACAAATGGAGCTTAGCTGCAGCCGACA
CGCTCTTCACCTGCGCGTCGTTGGCAACGCTACTCACACTCCTTCTGCTC
CGTCAGGTATCGACGTATGTGACGGACCGCATGCTCACGGCGACCTCGCT
GACGCTAGGAATGTTCGGATGGGCGTTCCTGTCGCCCAGTACACTTCCGG
TTCACAGCTTCATCTTCGGGTTTGGACTGGTGTCCATTGCATTCCCGCTG
GGAAGGGCGTGCATCATGTCGCTGGTGACCAAGCTGCTGCCCAACAAGTG
GCAAGGACGGGGACAGGGCGTGCTGCTGGCGGTGGGTGCGTTCGCCAGGA
TTGGCGCGCCGTTCGGAGCGGTGCAGGTGTTCTACGTGCAGAGAGGGTCC
TCGCGCGCAACGCGTCTCGCTCGCTTCTCGCCCACCGTCACTGCCGTGCT
CATTATGTCCTTCAAGAAGGTAGCGTCGTACACCGCCAACTTCGAGGCGA
AGCAATCGTCTCAACAGTCGCCCGTCTCCGAGAAAGTCTCCTCAATAGCC
ACCAAGTTCGGGGCCATTGTCGATCCGACAGCTCCAATTCCGCTGCGCTC
GCCGCGAAAGGTCTCTCACATCTCGCGTCAGAAATCGGCGCCCAACGTGG
TTGCTTCCGAAGAAACGCAACATTCTGTGCATTCTCTGGCGTCAAGATTC
GCGGAGCCTGAGCAGAAGAATGACACTTCAAGCCAATTTTCGAGCGCCGC
CGCTGCGTTTCGAGAACGCGAAAAGAATATAGATGGCGATGCCAGCAAAG
TGGTTGGAATGGTGAGAGGTATTGATGATGGCGTTAAAGGAGAGACTCAG
AAAGTCTCTTCGGTCGCTAGGGTGTTTGAAAGCAGTACTGTCAGCGCTGG
CGGCGCTCGGTATCAGGGCGCTGCAAGCGTTGCTTTGGAAGGTAATCAAA
ATGAACAGGCTGTCAAGGAAGCGCCTGTGAAGGAGGCTCCTGTGAAGGAA
AATGCGGATGTCATGACTGACGACGAGGAACGCATTGCCAGACGAGCGTT
TGGAAGAGCGAAGAGTGTGCAAGATACTGCTAGAATGTTTGAACGCGGCG
TTTCGGCTGATATTGACGTTGGGAAGAGCGCTGCAGATGACGATGCGGCT
TCCACCCAGGAAGCAAGGAATCGCTTCCAGGACGCTGCTAAGAAGTTTGG
CGCTTCGTGA
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protein sequence of Gcaud9558.t1

>Gcaud9558.t1 ID=Gcaud9558.t1|Name=Gcaud9558.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=670bp
MGLSSSSRFTLYLTVFLPCVSFAIVLPSLWPYLHLLGAQKRFLAFVVAIY
SVGEAIGAVYFGWLFSCLATKQVLQQASLLGTLGSLLYLFAYDQRVFGKY
MLLVSRLLCGFWTGGAQAVQQAYLNVCLSKRDITAATVELNTWACLGFVA
GPALALLFVPFPEMHFGAFHFDQFTLPAWFMLLSSVLCVLLYRFGLTEES
DRQHVAQDHMHDMSELDERSALLPLSKQFVEQQAPHGSDLPLLIALVVCN
VAFFVHMFGFALQETVTTPLVQTYYKWSLAAADTLFTCASLATLLTLLLL
RQVSTYVTDRMLTATSLTLGMFGWAFLSPSTLPVHSFIFGFGLVSIAFPL
GRACIMSLVTKLLPNKWQGRGQGVLLAVGAFARIGAPFGAVQVFYVQRGS
SRATRLARFSPTVTAVLIMSFKKVASYTANFEAKQSSQQSPVSEKVSSIA
TKFGAIVDPTAPIPLRSPRKVSHISRQKSAPNVVASEETQHSVHSLASRF
AEPEQKNDTSSQFSSAAAAFREREKNIDGDASKVVGMVRGIDDGVKGETQ
KVSSVARVFESSTVSAGGARYQGAASVALEGNQNEQAVKEAPVKEAPVKE
NADVMTDDEERIARRAFGRAKSVQDTARMFERGVSADIDVGKSAADDDAA
STQEARNRFQDAAKKFGAS*
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mRNA from alignment at NODE_388_length_27163_cov_4.403295:4972..7248-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9558.t1 ID=Gcaud9558.t1|Name=Gcaud9558.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2277bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:4972..7248- (Gracilaria caudata M_176_S67 male)
ATGGGACTGTCTTCTTCGTCGAGGTTCACCTTGTACCTCACCGTGTTCCT
TCCGTGCGTGTCCTTCGCAATTGTGTTGCCGTCGTTATGGCCGTATTTGC
ACCTCCTCGGCGCGCAAAAACGCTTCCTAGCGTTCGTGGTGGCCATCTAT
TCCGTGGGAGAAGCGATTGGAGCCGTGTACTTCGGCTGGCTTTTCTCTTG
TCTCGCCACCAAACAGGTGCTTCAACAGGCCAGTTTGCTAGGCACACTGG
GCTCGTTGCTGTACCTGTTCGCGTACGACCAGCGCGTGTTTGGTAAATAC
ATGCTTCTTGTTTCTAGATTGCTGTGCGGATTCTGGACGGGCGGCGCGCA
GGCGGTGCAGCAGGCGTACCTCAATGTGTGCTTGTCCAAGAGAGATATTA
CTGCTGCCACAGTGGAGCTCAACACATGGGCCTGCCTCGGCTTCGTCGCC
GGTCCGGCTTTGGCTTTGCTGTTCGTTCCGTTTCCTGAAATGCACTTCGG
CGCGTTTCATTTCGACCAGTTCACTTTGCCCGCTTGGTTCATGCTTCTCA
GTTCTGTGTTGTGCGTGTTGCTGTATCGGTTCGGATTGACAGAAGAGAGC
GACAGGCAACATGTCGCGCAAGACCACATGCATGACATGAGTGAACTGGA
CGAAAGAAGCGCATTGCTGCCGCTGTCCAAACAGTTTGTCGAACAACAAG
CGCCCCATGGCTCCGACTTGCCGCTGCTGATCGCGTTAGTGGTTTGCAAT
GTAGCTTTCTTCGTTCATATGTTTGGCTTCGCGCTGCAGGAAACAGTCAC
CACGTACGTATTGTTCACTTGTTTTCGTTCGACTCTCGTGCGCAAAATGG
CACCACTAACGCATCCGAAACAGCCCGCTCGTACAGACATACTACAAATG
GAGCTTAGCTGCAGCCGACACGCTCTTCACCTGCGCGTCGTTGGCAACGC
TACTCACACTCCTTCTGCTCCGTCAGGTATCGACGTATGTGACGGACCGC
ATGCTCACGGCGACCTCGCTGACGCTAGGAATGTTCGGATGGGCGTTCCT
GTCGCCCAGTACACTTCCGGTTCACAGCTTCATCTTCGGGTTTGGACTGG
TGTCCATTGCATTCCCGCTGGGAAGGGCGTGCATCATGTCGCTGGTGACC
AAGCTGCTGCCCAACAAGTGGCAAGGACGGGGACAGGGCGTGCTGCTGGC
GGTGGGTGCGTTCGCCAGGATTGGCGCGCCGTTCGGAGCGGTGCAGGTGT
TCTACGTGCAGAGAGGGTCGTGGCTGGTGTTCGGCGGCACCGCCGCGCTG
TTTGGCGCGTCGCTGGCGACGGTGGCGGCCGTGTGGAGCTCTCTGTGCAC
GTGAGAACGCATTTCGTGTCCGTTGGCGGGAGAATCGCGACGAATGATGT
TGCTGTAAAGTTTTGGGGGCTTACTGTGTTCTTGTACAGCTTTTCTGCGT
TTTGAAAGCGGCGCAGCTCGCGCGCAACGCGTCTCGCTCGCTTCTCGCCC
ACCGTCACTGCCGTGCTCATTATGTCCTTCAAGAAGGTAGCGTCGTACAC
CGCCAACTTCGAGGCGAAGCAATCGTCTCAACAGTCGCCCGTCTCCGAGA
AAGTCTCCTCAATAGCCACCAAGTTCGGGGCCATTGTCGATCCGACAGCT
CCAATTCCGCTGCGCTCGCCGCGAAAGGTCTCTCACATCTCGCGTCAGAA
ATCGGCGCCCAACGTGGTTGCTTCCGAAGAAACGCAACATTCTGTGCATT
CTCTGGCGTCAAGATTCGCGGAGCCTGAGCAGAAGAATGACACTTCAAGC
CAATTTTCGAGCGCCGCCGCTGCGTTTCGAGAACGCGAAAAGAATATAGA
TGGCGATGCCAGCAAAGTGGTTGGAATGGTGAGAGGTATTGATGATGGCG
TTAAAGGAGAGACTCAGAAAGTCTCTTCGGTCGCTAGGGTGTTTGAAAGC
AGTACTGTCAGCGCTGGCGGCGCTCGGTATCAGGGCGCTGCAAGCGTTGC
TTTGGAAGGTAATCAAAATGAACAGGCTGTCAAGGAAGCGCCTGTGAAGG
AGGCTCCTGTGAAGGAAAATGCGGATGTCATGACTGACGACGAGGAACGC
ATTGCCAGACGAGCGTTTGGAAGAGCGAAGAGTGTGCAAGATACTGCTAG
AATGTTTGAACGCGGCGTTTCGGCTGATATTGACGTTGGGAAGAGCGCTG
CAGATGACGATGCGGCTTCCACCCAGGAAGCAAGGAATCGCTTCCAGGAC
GCTGCTAAGAAGTTTGGCGCTTCGTGA
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Coding sequence (CDS) from alignment at NODE_388_length_27163_cov_4.403295:4972..7248-

>Gcaud9558.t1 ID=Gcaud9558.t1|Name=Gcaud9558.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2010bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:4972..7248- (Gracilaria caudata M_176_S67 male)
ATGGGACTGTCTTCTTCGTCGAGGTTCACCTTGTACCTCACCGTGTTCCT
TCCGTGCGTGTCCTTCGCAATTGTGTTGCCGTCGTTATGGCCGTATTTGC
ACCTCCTCGGCGCGCAAAAACGCTTCCTAGCGTTCGTGGTGGCCATCTAT
TCCGTGGGAGAAGCGATTGGAGCCGTGTACTTCGGCTGGCTTTTCTCTTG
TCTCGCCACCAAACAGGTGCTTCAACAGGCCAGTTTGCTAGGCACACTGG
GCTCGTTGCTGTACCTGTTCGCGTACGACCAGCGCGTGTTTGGTAAATAC
ATGCTTCTTGTTTCTAGATTGCTGTGCGGATTCTGGACGGGCGGCGCGCA
GGCGGTGCAGCAGGCGTACCTCAATGTGTGCTTGTCCAAGAGAGATATTA
CTGCTGCCACAGTGGAGCTCAACACATGGGCCTGCCTCGGCTTCGTCGCC
GGTCCGGCTTTGGCTTTGCTGTTCGTTCCGTTTCCTGAAATGCACTTCGG
CGCGTTTCATTTCGACCAGTTCACTTTGCCCGCTTGGTTCATGCTTCTCA
GTTCTGTGTTGTGCGTGTTGCTGTATCGGTTCGGATTGACAGAAGAGAGC
GACAGGCAACATGTCGCGCAAGACCACATGCATGACATGAGTGAACTGGA
CGAAAGAAGCGCATTGCTGCCGCTGTCCAAACAGTTTGTCGAACAACAAG
CGCCCCATGGCTCCGACTTGCCGCTGCTGATCGCGTTAGTGGTTTGCAAT
GTAGCTTTCTTCGTTCATATGTTTGGCTTCGCGCTGCAGGAAACAGTCAC
CACCCCGCTCGTACAGACATACTACAAATGGAGCTTAGCTGCAGCCGACA
CGCTCTTCACCTGCGCGTCGTTGGCAACGCTACTCACACTCCTTCTGCTC
CGTCAGGTATCGACGTATGTGACGGACCGCATGCTCACGGCGACCTCGCT
GACGCTAGGAATGTTCGGATGGGCGTTCCTGTCGCCCAGTACACTTCCGG
TTCACAGCTTCATCTTCGGGTTTGGACTGGTGTCCATTGCATTCCCGCTG
GGAAGGGCGTGCATCATGTCGCTGGTGACCAAGCTGCTGCCCAACAAGTG
GCAAGGACGGGGACAGGGCGTGCTGCTGGCGGTGGGTGCGTTCGCCAGGA
TTGGCGCGCCGTTCGGAGCGGTGCAGGTGTTCTACGTGCAGAGAGGGTCC
TCGCGCGCAACGCGTCTCGCTCGCTTCTCGCCCACCGTCACTGCCGTGCT
CATTATGTCCTTCAAGAAGGTAGCGTCGTACACCGCCAACTTCGAGGCGA
AGCAATCGTCTCAACAGTCGCCCGTCTCCGAGAAAGTCTCCTCAATAGCC
ACCAAGTTCGGGGCCATTGTCGATCCGACAGCTCCAATTCCGCTGCGCTC
GCCGCGAAAGGTCTCTCACATCTCGCGTCAGAAATCGGCGCCCAACGTGG
TTGCTTCCGAAGAAACGCAACATTCTGTGCATTCTCTGGCGTCAAGATTC
GCGGAGCCTGAGCAGAAGAATGACACTTCAAGCCAATTTTCGAGCGCCGC
CGCTGCGTTTCGAGAACGCGAAAAGAATATAGATGGCGATGCCAGCAAAG
TGGTTGGAATGGTGAGAGGTATTGATGATGGCGTTAAAGGAGAGACTCAG
AAAGTCTCTTCGGTCGCTAGGGTGTTTGAAAGCAGTACTGTCAGCGCTGG
CGGCGCTCGGTATCAGGGCGCTGCAAGCGTTGCTTTGGAAGGTAATCAAA
ATGAACAGGCTGTCAAGGAAGCGCCTGTGAAGGAGGCTCCTGTGAAGGAA
AATGCGGATGTCATGACTGACGACGAGGAACGCATTGCCAGACGAGCGTT
TGGAAGAGCGAAGAGTGTGCAAGATACTGCTAGAATGTTTGAACGCGGCG
TTTCGGCTGATATTGACGTTGGGAAGAGCGCTGCAGATGACGATGCGGCT
TCCACCCAGGAAGCAAGGAATCGCTTCCAGGACGCTGCTAAGAAGTTTGG
CGCTTCGTGA
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