Gcaud9552.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9552.t1
Unique Name	Gcaud9552.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_509_length_23378_cov_4.283678	contig	NODE_509_length_23378_cov_4.283678:4126..5061 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9552	Gcaud9552	Gracilaria caudata M_176_S67 male	gene	NODE_509_length_23378_cov_4.283678 4126..5139 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9552.t1.stop1	Gcaud9552.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_509_length_23378_cov_4.283678 4126..4128 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9552.t1.CDS1	Gcaud9552.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_509_length_23378_cov_4.283678 4126..5061 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9552.t1.exon1	Gcaud9552.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_509_length_23378_cov_4.283678 4126..5061 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9552.t1.start1	Gcaud9552.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_509_length_23378_cov_4.283678 5059..5061 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9552.t1	Gcaud9552.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_509_length_23378_cov_4.283678 4126..5061 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_509_length_23378_cov_4.283678:4126..5061-
coding sequence from alignment at NODE_509_length_23378_cov_4.283678:4126..5061-

mRNA sequence

>Gcaud9552.t1 ID=Gcaud9552.t1|Name=Gcaud9552.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=312bp
MLNQKGDQASHYCNSETFAPTQSWLGQSFVFGDETPEEQCVEESLNPTSQ
KSSISSESVIRHDLSPVTRRHLSGYSEAVLEHWETLNKFESEEHDNIGVL
YYKLEVTHWRLKYNVDCVLSDQRDLGFLADDTSECGLTDICIYRDTTHNI
TWIFPRGIRRLDDFKEMNSSGWTSLQKGELISVFIELPQCPALRLDALLT
SVDAELMAKLDMYANRVYRPGQPLFTSDIANVLNGRRMAELLSGVSVRAP
PVSENITVSNDLSTVIVTIRTWPHICFFAVVVINFAVLAVLWFLTPAFGA
GDEKLWRGAQY*

spliced messenger RNA

>Gcaud9552.t1 ID=Gcaud9552.t1|Name=Gcaud9552.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_509_length_23378_cov_4.283678:4126..5061- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAACCAAAAAGGCGATCAGGCTTCGCACTACTGTAACTCTGAAAC
ATTTGCCCCAACGCAGTCTTGGTTGGGACAAAGTTTTGTGTTTGGAGACG
AAACACCCGAGGAGCAATGTGTTGAGGAGTCACTGAATCCTACATCACAA
AAGTCTTCCATTTCTTCTGAGAGCGTCATTCGTCATGACCTAAGCCCAGT
AACTCGTCGACACCTTTCAGGGTATTCAGAAGCAGTACTGGAACACTGGG
AAACATTAAACAAATTCGAAAGCGAAGAGCATGATAACATAGGGGTGCTG
TATTACAAGCTTGAAGTGACGCATTGGAGGCTGAAGTACAACGTAGATTG
CGTTCTCAGCGACCAACGCGACCTTGGATTCTTAGCCGACGATACGTCTG
AATGCGGTTTGACCGATATCTGTATATATCGAGATACAACGCATAATATC
ACGTGGATATTCCCAAGAGGAATTCGCAGATTGGATGACTTCAAAGAAAT
GAATTCTAGTGGCTGGACTTCTCTTCAAAAAGGAGAGCTCATTTCTGTCT
TCATTGAGCTTCCACAATGTCCTGCTCTGAGGTTAGATGCCTTGCTTACG
TCTGTGGACGCCGAACTGATGGCCAAACTGGATATGTACGCAAACAGGGT
GTACAGACCGGGCCAACCGCTTTTCACGTCTGACATAGCAAACGTACTGA
ATGGCAGAAGAATGGCTGAATTGCTTTCTGGCGTTTCTGTTCGAGCCCCT
CCAGTTTCGGAGAATATAACCGTATCAAACGATTTATCTACGGTGATTGT
TACGATTAGAACATGGCCTCACATATGCTTCTTTGCCGTTGTCGTCATCA
ATTTCGCGGTGCTCGCAGTTTTGTGGTTCCTCACTCCGGCATTCGGTGCA
GGGGATGAGAAGTTGTGGCGAGGTGCGCAATACTGA

protein sequence of Gcaud9552.t1

>Gcaud9552.t1 ID=Gcaud9552.t1|Name=Gcaud9552.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=312bp
MLNQKGDQASHYCNSETFAPTQSWLGQSFVFGDETPEEQCVEESLNPTSQ
KSSISSESVIRHDLSPVTRRHLSGYSEAVLEHWETLNKFESEEHDNIGVL
YYKLEVTHWRLKYNVDCVLSDQRDLGFLADDTSECGLTDICIYRDTTHNI
TWIFPRGIRRLDDFKEMNSSGWTSLQKGELISVFIELPQCPALRLDALLT
SVDAELMAKLDMYANRVYRPGQPLFTSDIANVLNGRRMAELLSGVSVRAP
PVSENITVSNDLSTVIVTIRTWPHICFFAVVVINFAVLAVLWFLTPAFGA
GDEKLWRGAQY*

mRNA from alignment at NODE_509_length_23378_cov_4.283678:4126..5061-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9552.t1 ID=Gcaud9552.t1|Name=Gcaud9552.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_509_length_23378_cov_4.283678:4126..5061- (Gracilaria caudata M_176_S67 male)
ATGTTGAACCAAAAAGGCGATCAGGCTTCGCACTACTGTAACTCTGAAAC
ATTTGCCCCAACGCAGTCTTGGTTGGGACAAAGTTTTGTGTTTGGAGACG
AAACACCCGAGGAGCAATGTGTTGAGGAGTCACTGAATCCTACATCACAA
AAGTCTTCCATTTCTTCTGAGAGCGTCATTCGTCATGACCTAAGCCCAGT
AACTCGTCGACACCTTTCAGGGTATTCAGAAGCAGTACTGGAACACTGGG
AAACATTAAACAAATTCGAAAGCGAAGAGCATGATAACATAGGGGTGCTG
TATTACAAGCTTGAAGTGACGCATTGGAGGCTGAAGTACAACGTAGATTG
CGTTCTCAGCGACCAACGCGACCTTGGATTCTTAGCCGACGATACGTCTG
AATGCGGTTTGACCGATATCTGTATATATCGAGATACAACGCATAATATC
ACGTGGATATTCCCAAGAGGAATTCGCAGATTGGATGACTTCAAAGAAAT
GAATTCTAGTGGCTGGACTTCTCTTCAAAAAGGAGAGCTCATTTCTGTCT
TCATTGAGCTTCCACAATGTCCTGCTCTGAGGTTAGATGCCTTGCTTACG
TCTGTGGACGCCGAACTGATGGCCAAACTGGATATGTACGCAAACAGGGT
GTACAGACCGGGCCAACCGCTTTTCACGTCTGACATAGCAAACGTACTGA
ATGGCAGAAGAATGGCTGAATTGCTTTCTGGCGTTTCTGTTCGAGCCCCT
CCAGTTTCGGAGAATATAACCGTATCAAACGATTTATCTACGGTGATTGT
TACGATTAGAACATGGCCTCACATATGCTTCTTTGCCGTTGTCGTCATCA
ATTTCGCGGTGCTCGCAGTTTTGTGGTTCCTCACTCCGGCATTCGGTGCA
GGGGATGAGAAGTTGTGGCGAGGTGCGCAATACTGA

Coding sequence (CDS) from alignment at NODE_509_length_23378_cov_4.283678:4126..5061-

>Gcaud9552.t1 ID=Gcaud9552.t1|Name=Gcaud9552.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=936bp|location=Sequence derived from alignment at NODE_509_length_23378_cov_4.283678:4126..5061- (Gracilaria caudata M_176_S67 male)
ATGTTGAACCAAAAAGGCGATCAGGCTTCGCACTACTGTAACTCTGAAAC
ATTTGCCCCAACGCAGTCTTGGTTGGGACAAAGTTTTGTGTTTGGAGACG
AAACACCCGAGGAGCAATGTGTTGAGGAGTCACTGAATCCTACATCACAA
AAGTCTTCCATTTCTTCTGAGAGCGTCATTCGTCATGACCTAAGCCCAGT
AACTCGTCGACACCTTTCAGGGTATTCAGAAGCAGTACTGGAACACTGGG
AAACATTAAACAAATTCGAAAGCGAAGAGCATGATAACATAGGGGTGCTG
TATTACAAGCTTGAAGTGACGCATTGGAGGCTGAAGTACAACGTAGATTG
CGTTCTCAGCGACCAACGCGACCTTGGATTCTTAGCCGACGATACGTCTG
AATGCGGTTTGACCGATATCTGTATATATCGAGATACAACGCATAATATC
ACGTGGATATTCCCAAGAGGAATTCGCAGATTGGATGACTTCAAAGAAAT
GAATTCTAGTGGCTGGACTTCTCTTCAAAAAGGAGAGCTCATTTCTGTCT
TCATTGAGCTTCCACAATGTCCTGCTCTGAGGTTAGATGCCTTGCTTACG
TCTGTGGACGCCGAACTGATGGCCAAACTGGATATGTACGCAAACAGGGT
GTACAGACCGGGCCAACCGCTTTTCACGTCTGACATAGCAAACGTACTGA
ATGGCAGAAGAATGGCTGAATTGCTTTCTGGCGTTTCTGTTCGAGCCCCT
CCAGTTTCGGAGAATATAACCGTATCAAACGATTTATCTACGGTGATTGT
TACGATTAGAACATGGCCTCACATATGCTTCTTTGCCGTTGTCGTCATCA
ATTTCGCGGTGCTCGCAGTTTTGTGGTTCCTCACTCCGGCATTCGGTGCA
GGGGATGAGAAGTTGTGGCGAGGTGCGCAATACTGA