Gcaud9518.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9518.t1
Unique Name	Gcaud9518.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:46655..47674 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	5.59e-72
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9518	Gcaud9518	Gracilaria caudata M_176_S67 male	gene	NODE_69_length_56878_cov_4.412084 46655..47674 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9518.t1.stop1	Gcaud9518.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_69_length_56878_cov_4.412084 46655..46657 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9518.t1.CDS1	Gcaud9518.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 46655..47674 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9518.t1.exon1	Gcaud9518.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 46655..47674 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9518.t1.start1	Gcaud9518.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_69_length_56878_cov_4.412084 47672..47674 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9518.t1	Gcaud9518.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_69_length_56878_cov_4.412084 46655..47674 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_69_length_56878_cov_4.412084:46655..47674-
coding sequence from alignment at NODE_69_length_56878_cov_4.412084:46655..47674-

mRNA sequence

>Gcaud9518.t1 ID=Gcaud9518.t1|Name=Gcaud9518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=340bp
MLRLCVLIALVGLFSYASLGSCNAVWQTVKIKGPPPTARHEACFVMVNGK
GYLIGGRGNKPVDIFNPSDNTWTQGPGPGLQLHHMQCVAYGDEVWIPSAW
TGGFPKEKNVDKIYIYNTRTNSWYTRPGLPEYRRRGGAAAVLHDLKIYVI
AGNRGGHGAHATTLGWVDYYDLRTNSWVLNLPTMPEPRDHVGGALVNWNK
ICIAGGRDGGVSDFFTATKGSTYCFNLNGDGSGWWQNMNAPIPAPRAGAS
YGMTCFGYMMIAGGERDDAFAQVDIFDGSSWTTTASMNRKRHGSGLAVSS
CLCGKIFIASGSGSRGGRPELETTEVYLPYGNASPCEVH*

spliced messenger RNA

>Gcaud9518.t1 ID=Gcaud9518.t1|Name=Gcaud9518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:46655..47674- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGTCTCTGCGTCCTTATCGCACTCGTCGGGCTGTTTTCATATGC
TTCGCTTGGCTCGTGCAATGCCGTGTGGCAAACCGTCAAAATCAAAGGTC
CGCCCCCAACAGCCAGGCATGAGGCCTGCTTTGTTATGGTCAACGGAAAA
GGCTATCTGATCGGTGGACGTGGCAACAAACCTGTTGATATCTTCAACCC
GAGCGATAACACATGGACCCAAGGGCCTGGCCCAGGTCTACAGCTACACC
ATATGCAATGCGTTGCATACGGTGACGAAGTTTGGATTCCATCTGCATGG
ACCGGTGGCTTTCCCAAGGAGAAGAACGTCGACAAAATATATATATACAA
CACGAGAACGAACTCGTGGTACACCAGACCGGGACTTCCAGAATACCGTC
GTCGTGGAGGTGCAGCCGCCGTGTTGCATGACTTGAAGATCTACGTTATC
GCCGGAAATCGGGGTGGACATGGAGCCCATGCAACCACGCTTGGATGGGT
GGACTACTACGACCTTCGCACCAACAGCTGGGTACTTAACTTACCAACCA
TGCCAGAACCCCGTGACCATGTCGGCGGCGCTCTCGTGAACTGGAACAAA
ATATGCATAGCCGGTGGGAGAGACGGTGGTGTATCGGACTTCTTCACAGC
CACGAAGGGAAGCACATATTGTTTCAATCTCAACGGAGACGGCAGTGGAT
GGTGGCAAAACATGAATGCACCGATTCCAGCGCCACGTGCGGGGGCTTCG
TATGGTATGACGTGCTTTGGATATATGATGATTGCCGGCGGGGAACGGGA
TGACGCTTTTGCACAGGTTGATATATTTGATGGGTCGTCGTGGACAACGA
CGGCTAGTATGAACCGGAAGAGGCATGGGTCGGGACTGGCCGTGTCAAGC
TGCTTGTGCGGAAAGATTTTCATTGCGTCTGGAAGTGGGAGTCGCGGGGG
ACGACCAGAACTCGAGACGACTGAAGTGTATCTCCCATATGGTAATGCAT
CTCCCTGCGAGGTTCATTAA

protein sequence of Gcaud9518.t1

>Gcaud9518.t1 ID=Gcaud9518.t1|Name=Gcaud9518.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=340bp
MLRLCVLIALVGLFSYASLGSCNAVWQTVKIKGPPPTARHEACFVMVNGK
GYLIGGRGNKPVDIFNPSDNTWTQGPGPGLQLHHMQCVAYGDEVWIPSAW
TGGFPKEKNVDKIYIYNTRTNSWYTRPGLPEYRRRGGAAAVLHDLKIYVI
AGNRGGHGAHATTLGWVDYYDLRTNSWVLNLPTMPEPRDHVGGALVNWNK
ICIAGGRDGGVSDFFTATKGSTYCFNLNGDGSGWWQNMNAPIPAPRAGAS
YGMTCFGYMMIAGGERDDAFAQVDIFDGSSWTTTASMNRKRHGSGLAVSS
CLCGKIFIASGSGSRGGRPELETTEVYLPYGNASPCEVH*

mRNA from alignment at NODE_69_length_56878_cov_4.412084:46655..47674-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9518.t1 ID=Gcaud9518.t1|Name=Gcaud9518.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:46655..47674- (Gracilaria caudata M_176_S67 male)
ATGTTGCGTCTCTGCGTCCTTATCGCACTCGTCGGGCTGTTTTCATATGC
TTCGCTTGGCTCGTGCAATGCCGTGTGGCAAACCGTCAAAATCAAAGGTC
CGCCCCCAACAGCCAGGCATGAGGCCTGCTTTGTTATGGTCAACGGAAAA
GGCTATCTGATCGGTGGACGTGGCAACAAACCTGTTGATATCTTCAACCC
GAGCGATAACACATGGACCCAAGGGCCTGGCCCAGGTCTACAGCTACACC
ATATGCAATGCGTTGCATACGGTGACGAAGTTTGGATTCCATCTGCATGG
ACCGGTGGCTTTCCCAAGGAGAAGAACGTCGACAAAATATATATATACAA
CACGAGAACGAACTCGTGGTACACCAGACCGGGACTTCCAGAATACCGTC
GTCGTGGAGGTGCAGCCGCCGTGTTGCATGACTTGAAGATCTACGTTATC
GCCGGAAATCGGGGTGGACATGGAGCCCATGCAACCACGCTTGGATGGGT
GGACTACTACGACCTTCGCACCAACAGCTGGGTACTTAACTTACCAACCA
TGCCAGAACCCCGTGACCATGTCGGCGGCGCTCTCGTGAACTGGAACAAA
ATATGCATAGCCGGTGGGAGAGACGGTGGTGTATCGGACTTCTTCACAGC
CACGAAGGGAAGCACATATTGTTTCAATCTCAACGGAGACGGCAGTGGAT
GGTGGCAAAACATGAATGCACCGATTCCAGCGCCACGTGCGGGGGCTTCG
TATGGTATGACGTGCTTTGGATATATGATGATTGCCGGCGGGGAACGGGA
TGACGCTTTTGCACAGGTTGATATATTTGATGGGTCGTCGTGGACAACGA
CGGCTAGTATGAACCGGAAGAGGCATGGGTCGGGACTGGCCGTGTCAAGC
TGCTTGTGCGGAAAGATTTTCATTGCGTCTGGAAGTGGGAGTCGCGGGGG
ACGACCAGAACTCGAGACGACTGAAGTGTATCTCCCATATGGTAATGCAT
CTCCCTGCGAGGTTCATTAA

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:46655..47674-

>Gcaud9518.t1 ID=Gcaud9518.t1|Name=Gcaud9518.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1020bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:46655..47674- (Gracilaria caudata M_176_S67 male)
ATGTTGCGTCTCTGCGTCCTTATCGCACTCGTCGGGCTGTTTTCATATGC
TTCGCTTGGCTCGTGCAATGCCGTGTGGCAAACCGTCAAAATCAAAGGTC
CGCCCCCAACAGCCAGGCATGAGGCCTGCTTTGTTATGGTCAACGGAAAA
GGCTATCTGATCGGTGGACGTGGCAACAAACCTGTTGATATCTTCAACCC
GAGCGATAACACATGGACCCAAGGGCCTGGCCCAGGTCTACAGCTACACC
ATATGCAATGCGTTGCATACGGTGACGAAGTTTGGATTCCATCTGCATGG
ACCGGTGGCTTTCCCAAGGAGAAGAACGTCGACAAAATATATATATACAA
CACGAGAACGAACTCGTGGTACACCAGACCGGGACTTCCAGAATACCGTC
GTCGTGGAGGTGCAGCCGCCGTGTTGCATGACTTGAAGATCTACGTTATC
GCCGGAAATCGGGGTGGACATGGAGCCCATGCAACCACGCTTGGATGGGT
GGACTACTACGACCTTCGCACCAACAGCTGGGTACTTAACTTACCAACCA
TGCCAGAACCCCGTGACCATGTCGGCGGCGCTCTCGTGAACTGGAACAAA
ATATGCATAGCCGGTGGGAGAGACGGTGGTGTATCGGACTTCTTCACAGC
CACGAAGGGAAGCACATATTGTTTCAATCTCAACGGAGACGGCAGTGGAT
GGTGGCAAAACATGAATGCACCGATTCCAGCGCCACGTGCGGGGGCTTCG
TATGGTATGACGTGCTTTGGATATATGATGATTGCCGGCGGGGAACGGGA
TGACGCTTTTGCACAGGTTGATATATTTGATGGGTCGTCGTGGACAACGA
CGGCTAGTATGAACCGGAAGAGGCATGGGTCGGGACTGGCCGTGTCAAGC
TGCTTGTGCGGAAAGATTTTCATTGCGTCTGGAAGTGGGAGTCGCGGGGG
ACGACCAGAACTCGAGACGACTGAAGTGTATCTCCCATATGGTAATGCAT
CTCCCTGCGAGGTTCATTAA