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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 113608.XP_003684878.1 |
| Preferred name | TCB1 |
| PFAMs | C2 |
| Max annot lvl | 4751|Fungi |
| GOs | GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0005938,GO:0006996,GO:0007029,GO:0008150,GO:0008289,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0019216,GO:0019220,GO:0019222,GO:0022406,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032541,GO:0035303,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0050789,GO:0050794,GO:0051174,GO:0051179,GO:0051286,GO:0051640,GO:0051641,GO:0051643,GO:0060255,GO:0060304,GO:0061024,GO:0061817,GO:0065007,GO:0071782,GO:0071840,GO:0071944,GO:0080090,GO:0090158,GO:0097708,GO:0098827,GO:0099568,GO:0140056,GO:1903725 |
| Evalue | 7.6e-05 |
| EggNOG OGs | COG5038@1|root,KOG1012@2759|Eukaryota,38DXC@33154|Opisthokonta,3NU87@4751|Fungi,3QJI2@4890|Ascomycota,3RRKK@4891|Saccharomycetes,3S066@4893|Saccharomycetaceae |
| Description | to Saccharomyces cerevisiae TCB2 (YNL087W) and TCB1 (YOR086C) |
| COG category | U |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9504.t1.start1 | Gcaud9504.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_69_length_56878_cov_4.412084 17216..17218 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9504.t1.stop1 | Gcaud9504.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_69_length_56878_cov_4.412084 18033..18035 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9504.t1 ID=Gcaud9504.t1|Name=Gcaud9504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=138bp
MSEVEGKISIWIKSGSFNHASDLYIKVFIDDNDIWRTDDKDGFTPDWDST
CVKHIKGDYEKVIIKLLDEDTCTRDDVIATAEFSIHDLLDDGINDDEVPM
SDADGNQVGTLAVNINFEAGDVNAFELFGAMLHKGDD* back to topspliced messenger RNA >Gcaud9504.t1 ID=Gcaud9504.t1|Name=Gcaud9504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:17216..18035+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTGAAGTTGAGGGAAAGATCAGCATCTGGATCAAGTCAGGTTCCTT
CAACCACGCCAGCGATTTGTATATCAAGGTGTTTATCGATGACAACGATA
TTTGGAGAACTGATGACAAGGACGGCTTTACTCCAGACTGGGACTCCACT
TGCGTCAAACACATCAAAGGCGATTACGAGAAGGTCATCATCAAACTTCT
GGACGAGGATACATGTACACGTGATGATGTGATTGCCACTGCTGAGTTCT
CGATCCACGATTTGCTCGACGATGGTATCAATGACGACGAGGTTCCTATG
AGCGACGCCGATGGCAATCAAGTTGGAACGCTTGCCGTCAACATCAATTT
CGAGGCGGGAGACGTGAATGCGTTCGAACTGTTTGGAGCAATGCTTCACA
AGGGCGATGATTAA back to topprotein sequence of Gcaud9504.t1 >Gcaud9504.t1 ID=Gcaud9504.t1|Name=Gcaud9504.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=138bp
MSEVEGKISIWIKSGSFNHASDLYIKVFIDDNDIWRTDDKDGFTPDWDST
CVKHIKGDYEKVIIKLLDEDTCTRDDVIATAEFSIHDLLDDGINDDEVPM
SDADGNQVGTLAVNINFEAGDVNAFELFGAMLHKGDD* back to topmRNA from alignment at NODE_69_length_56878_cov_4.412084:17216..18035+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9504.t1 ID=Gcaud9504.t1|Name=Gcaud9504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=820bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:17216..18035+ (Gracilaria caudata M_176_S67 male)
ATGTCTGAAGTTGAGGGAAAGATCAGCATCTGGATCAAGTCAGGTTCCTT
CAACCACGCCAGCGATTTGTATATCAAGGTGTTTATCGATGACAACGATG
TACGTCAAAACCGTTTCAGTACATCGTTCGTACATTCTTGGCGAAGCTTT
TGCTAACCAATCCATGTCTTGTTATGGCCTCCACACCCCGTAGATTTGGA
GAACTGATGACAAGGACGGCTTTACTCCAGACTGGGACTCCACTTGCGTC
AAACACATCAAAGGCGATTACGAGAAGGTCATCATCAAACTTCTGGACGA
GGATACATGTACGTTGCGCTCCTCCTCGCATCGTCCACCGAAACGGACCA
AATGCATTCCGGTACTAACTTTGCACTGCCATTGCCTCGCTCTCTCGATC
TCGAACTTTTGGTCCATCATTGCCTTCAATCTTCCCAGTCTCGTAAGTTT
TGTCTGACTCCTAAGCTGTGCGTTCTATGCGCAACAGAAAGAAAGGCGTT
CTAACTCGCTCTTGCTTCTCACATGTGAATCGTGACAGACGTGATGATGT
GATTGCCACTGCTGAGTTCTCGATCCACGATTTGCTCGACGATGGTATCA
ATGACGACGAGGTTCCTATGAGCGACGCCGATGGCAATCAAGTTGGAACG
CTTGCCGTCAACATCAATTTCGAGGCGGGAGACGGTACGTACAATGTGTT
CGCAGAACAACCGCATAGCAAGCAGTACAGGAGCACTAACAATCTTTTAT
GTCCCACTGCACCTAAACAGTGAATGCGTTCGAACTGTTTGGAGCAATGC
TTCACAAGGGCGATGATTAA back to topCoding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:17216..18035+ >Gcaud9504.t1 ID=Gcaud9504.t1|Name=Gcaud9504.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=414bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:17216..18035+ (Gracilaria caudata M_176_S67 male)
ATGTCTGAAGTTGAGGGAAAGATCAGCATCTGGATCAAGTCAGGTTCCTT
CAACCACGCCAGCGATTTGTATATCAAGGTGTTTATCGATGACAACGATA
TTTGGAGAACTGATGACAAGGACGGCTTTACTCCAGACTGGGACTCCACT
TGCGTCAAACACATCAAAGGCGATTACGAGAAGGTCATCATCAAACTTCT
GGACGAGGATACATGTACACGTGATGATGTGATTGCCACTGCTGAGTTCT
CGATCCACGATTTGCTCGACGATGGTATCAATGACGACGAGGTTCCTATG
AGCGACGCCGATGGCAATCAAGTTGGAACGCTTGCCGTCAACATCAATTT
CGAGGCGGGAGACGTGAATGCGTTCGAACTGTTTGGAGCAATGCTTCACA
AGGGCGATGATTAA back to top
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