Gcaud9499.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9499.t1
Unique Name	Gcaud9499.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:5083..6261 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9499	Gcaud9499	Gracilaria caudata M_176_S67 male	gene	NODE_69_length_56878_cov_4.412084 5083..6261 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9499.t1.stop1	Gcaud9499.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_69_length_56878_cov_4.412084 5083..5085 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9499.t1.CDS1	Gcaud9499.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 5083..6261 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9499.t1.exon1	Gcaud9499.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 5083..6261 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9499.t1.start1	Gcaud9499.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_69_length_56878_cov_4.412084 6259..6261 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9499.t1	Gcaud9499.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_69_length_56878_cov_4.412084 5083..6261 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_69_length_56878_cov_4.412084:5083..6261-
coding sequence from alignment at NODE_69_length_56878_cov_4.412084:5083..6261-

mRNA sequence

>Gcaud9499.t1 ID=Gcaud9499.t1|Name=Gcaud9499.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=393bp
MSSSSSPEESNVSSHMSESDLLLFSVTFEPSGVHFENEYGLHFVQNLNDL
HPFMAAKSYDALPSLETNVLTNSLCKIWDAFLASKLCLNGAKSCVNSAVQ
HSISSTIDAGDGMLARVSDTCIIKGQIAGPDDTFPHLTKVVSDESCGEIE
LRPGVTYIIHGDEVSEIRYCGSGRSEMSILSFRESFLRLGITEFRSPPLS
HTIWCVKGTTLYGTIRNAVQALCEEHCDAKCENRNCLNGQGRSAKYVYVK
SKDPLKVYDFRTRYDPLGGRYGLKDNALIKALKSVNPDKYTQKSLLRTLM
VVEKLRMTLPANQCWVLPGNREEAVFNPEKPYLKANGLYLLDLYPHDAEG
DAVSLWDGKKVLVTMYGQIAHVSTRSGSILEPGTRDVAWAGV*

spliced messenger RNA

>Gcaud9499.t1 ID=Gcaud9499.t1|Name=Gcaud9499.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:5083..6261- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCTTCGTCGAGTCCTGAAGAAAGCAATGTGTCTTCTCATATGTC
CGAGAGCGACTTACTGCTCTTTTCGGTAACCTTTGAACCAAGTGGAGTAC
ATTTTGAGAATGAATACGGGCTTCATTTTGTACAAAACCTCAATGACCTA
CATCCTTTTATGGCCGCAAAATCTTATGATGCACTACCTTCACTTGAAAC
TAACGTACTAACTAACTCTCTTTGTAAGATTTGGGATGCGTTCCTTGCGA
GCAAACTTTGTTTGAACGGCGCAAAGTCTTGCGTGAATTCAGCCGTTCAA
CACAGCATTTCTTCAACTATCGACGCCGGAGACGGCATGTTGGCGAGGGT
GTCCGACACTTGTATCATTAAAGGGCAAATCGCTGGCCCAGATGATACTT
TTCCGCATCTCACTAAGGTTGTCTCCGACGAAAGCTGTGGCGAAATAGAA
CTGCGTCCTGGAGTCACCTACATCATACACGGAGATGAGGTATCTGAGAT
CAGATATTGTGGATCTGGTCGTTCGGAAATGAGCATTCTCAGTTTCCGCG
AAAGTTTTCTGCGGCTAGGTATCACTGAGTTTCGCAGTCCGCCATTATCT
CATACGATTTGGTGCGTAAAGGGAACAACACTTTATGGAACTATCCGTAA
CGCTGTTCAAGCCCTTTGCGAGGAGCATTGTGATGCAAAGTGTGAGAATA
GAAATTGTCTTAACGGTCAGGGACGATCTGCCAAATATGTGTACGTGAAG
AGCAAAGATCCTCTGAAGGTGTACGATTTTCGTACAAGGTATGATCCGCT
AGGCGGCAGATATGGTCTAAAAGACAATGCGCTGATCAAAGCACTGAAGA
GTGTTAACCCAGACAAATATACTCAAAAGTCGCTTCTTCGAACTCTAATG
GTGGTGGAAAAACTCAGAATGACGCTCCCGGCTAATCAATGTTGGGTGCT
CCCGGGAAACAGAGAGGAGGCAGTTTTCAACCCTGAGAAGCCTTACTTGA
AGGCAAACGGGCTTTATCTTCTAGATTTGTATCCGCACGATGCTGAAGGT
GATGCTGTATCGCTATGGGACGGTAAGAAAGTACTTGTAACCATGTACGG
GCAAATTGCTCATGTCTCCACGAGAAGCGGGTCAATTCTTGAGCCAGGGA
CGCGGGACGTTGCTTGGGCCGGGGTTTAG

protein sequence of Gcaud9499.t1

>Gcaud9499.t1 ID=Gcaud9499.t1|Name=Gcaud9499.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=393bp
MSSSSSPEESNVSSHMSESDLLLFSVTFEPSGVHFENEYGLHFVQNLNDL
HPFMAAKSYDALPSLETNVLTNSLCKIWDAFLASKLCLNGAKSCVNSAVQ
HSISSTIDAGDGMLARVSDTCIIKGQIAGPDDTFPHLTKVVSDESCGEIE
LRPGVTYIIHGDEVSEIRYCGSGRSEMSILSFRESFLRLGITEFRSPPLS
HTIWCVKGTTLYGTIRNAVQALCEEHCDAKCENRNCLNGQGRSAKYVYVK
SKDPLKVYDFRTRYDPLGGRYGLKDNALIKALKSVNPDKYTQKSLLRTLM
VVEKLRMTLPANQCWVLPGNREEAVFNPEKPYLKANGLYLLDLYPHDAEG
DAVSLWDGKKVLVTMYGQIAHVSTRSGSILEPGTRDVAWAGV*

mRNA from alignment at NODE_69_length_56878_cov_4.412084:5083..6261-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9499.t1 ID=Gcaud9499.t1|Name=Gcaud9499.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:5083..6261- (Gracilaria caudata M_176_S67 male)
ATGAGTTCTTCGTCGAGTCCTGAAGAAAGCAATGTGTCTTCTCATATGTC
CGAGAGCGACTTACTGCTCTTTTCGGTAACCTTTGAACCAAGTGGAGTAC
ATTTTGAGAATGAATACGGGCTTCATTTTGTACAAAACCTCAATGACCTA
CATCCTTTTATGGCCGCAAAATCTTATGATGCACTACCTTCACTTGAAAC
TAACGTACTAACTAACTCTCTTTGTAAGATTTGGGATGCGTTCCTTGCGA
GCAAACTTTGTTTGAACGGCGCAAAGTCTTGCGTGAATTCAGCCGTTCAA
CACAGCATTTCTTCAACTATCGACGCCGGAGACGGCATGTTGGCGAGGGT
GTCCGACACTTGTATCATTAAAGGGCAAATCGCTGGCCCAGATGATACTT
TTCCGCATCTCACTAAGGTTGTCTCCGACGAAAGCTGTGGCGAAATAGAA
CTGCGTCCTGGAGTCACCTACATCATACACGGAGATGAGGTATCTGAGAT
CAGATATTGTGGATCTGGTCGTTCGGAAATGAGCATTCTCAGTTTCCGCG
AAAGTTTTCTGCGGCTAGGTATCACTGAGTTTCGCAGTCCGCCATTATCT
CATACGATTTGGTGCGTAAAGGGAACAACACTTTATGGAACTATCCGTAA
CGCTGTTCAAGCCCTTTGCGAGGAGCATTGTGATGCAAAGTGTGAGAATA
GAAATTGTCTTAACGGTCAGGGACGATCTGCCAAATATGTGTACGTGAAG
AGCAAAGATCCTCTGAAGGTGTACGATTTTCGTACAAGGTATGATCCGCT
AGGCGGCAGATATGGTCTAAAAGACAATGCGCTGATCAAAGCACTGAAGA
GTGTTAACCCAGACAAATATACTCAAAAGTCGCTTCTTCGAACTCTAATG
GTGGTGGAAAAACTCAGAATGACGCTCCCGGCTAATCAATGTTGGGTGCT
CCCGGGAAACAGAGAGGAGGCAGTTTTCAACCCTGAGAAGCCTTACTTGA
AGGCAAACGGGCTTTATCTTCTAGATTTGTATCCGCACGATGCTGAAGGT
GATGCTGTATCGCTATGGGACGGTAAGAAAGTACTTGTAACCATGTACGG
GCAAATTGCTCATGTCTCCACGAGAAGCGGGTCAATTCTTGAGCCAGGGA
CGCGGGACGTTGCTTGGGCCGGGGTTTAG

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:5083..6261-

>Gcaud9499.t1 ID=Gcaud9499.t1|Name=Gcaud9499.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1179bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:5083..6261- (Gracilaria caudata M_176_S67 male)
ATGAGTTCTTCGTCGAGTCCTGAAGAAAGCAATGTGTCTTCTCATATGTC
CGAGAGCGACTTACTGCTCTTTTCGGTAACCTTTGAACCAAGTGGAGTAC
ATTTTGAGAATGAATACGGGCTTCATTTTGTACAAAACCTCAATGACCTA
CATCCTTTTATGGCCGCAAAATCTTATGATGCACTACCTTCACTTGAAAC
TAACGTACTAACTAACTCTCTTTGTAAGATTTGGGATGCGTTCCTTGCGA
GCAAACTTTGTTTGAACGGCGCAAAGTCTTGCGTGAATTCAGCCGTTCAA
CACAGCATTTCTTCAACTATCGACGCCGGAGACGGCATGTTGGCGAGGGT
GTCCGACACTTGTATCATTAAAGGGCAAATCGCTGGCCCAGATGATACTT
TTCCGCATCTCACTAAGGTTGTCTCCGACGAAAGCTGTGGCGAAATAGAA
CTGCGTCCTGGAGTCACCTACATCATACACGGAGATGAGGTATCTGAGAT
CAGATATTGTGGATCTGGTCGTTCGGAAATGAGCATTCTCAGTTTCCGCG
AAAGTTTTCTGCGGCTAGGTATCACTGAGTTTCGCAGTCCGCCATTATCT
CATACGATTTGGTGCGTAAAGGGAACAACACTTTATGGAACTATCCGTAA
CGCTGTTCAAGCCCTTTGCGAGGAGCATTGTGATGCAAAGTGTGAGAATA
GAAATTGTCTTAACGGTCAGGGACGATCTGCCAAATATGTGTACGTGAAG
AGCAAAGATCCTCTGAAGGTGTACGATTTTCGTACAAGGTATGATCCGCT
AGGCGGCAGATATGGTCTAAAAGACAATGCGCTGATCAAAGCACTGAAGA
GTGTTAACCCAGACAAATATACTCAAAAGTCGCTTCTTCGAACTCTAATG
GTGGTGGAAAAACTCAGAATGACGCTCCCGGCTAATCAATGTTGGGTGCT
CCCGGGAAACAGAGAGGAGGCAGTTTTCAACCCTGAGAAGCCTTACTTGA
AGGCAAACGGGCTTTATCTTCTAGATTTGTATCCGCACGATGCTGAAGGT
GATGCTGTATCGCTATGGGACGGTAAGAAAGTACTTGTAACCATGTACGG
GCAAATTGCTCATGTCTCCACGAGAAGCGGGTCAATTCTTGAGCCAGGGA
CGCGGGACGTTGCTTGGGCCGGGGTTTAG