Gcaud9478.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9478.t1
Unique Name	Gcaud9478.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	442

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_318_length_30347_cov_4.399028	contig	NODE_318_length_30347_cov_4.399028:667..1992 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9478	Gcaud9478	Gracilaria caudata M_176_S67 male	gene	NODE_318_length_30347_cov_4.399028 667..1992 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9478.t1.stop1	Gcaud9478.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_318_length_30347_cov_4.399028 667..669 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9478.t1.CDS1	Gcaud9478.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_318_length_30347_cov_4.399028 667..1992 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9478.t1.exon1	Gcaud9478.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_318_length_30347_cov_4.399028 667..1992 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9478.t1.start1	Gcaud9478.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_318_length_30347_cov_4.399028 1990..1992 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9478.t1	Gcaud9478.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_318_length_30347_cov_4.399028 667..1992 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_318_length_30347_cov_4.399028:667..1992-
coding sequence from alignment at NODE_318_length_30347_cov_4.399028:667..1992-

mRNA sequence

>Gcaud9478.t1 ID=Gcaud9478.t1|Name=Gcaud9478.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=442bp
MRTYVVFRDGATTTISQPITDVEIAVVCLSYIFAMMSVLLRFRGEGNPRD
PLTIPFVNLIFIFISIAISMVALVLAFTNLISLDAMAAATIGLIPSLHLL
RTIQFLELKIRWLVFWRVYGGTEGMFFYYRVRTEKPGFAQDRVSQERLHI
IYYPHQVRIIRIFLLLRNAFYRAFACCCTKPESDKYLSRFFRDERIPKEE
RNERKFWTGYHVEEYKSGIVLTQSRQYGGAWFEIERVLGGHTLATDPSKV
HAGTSSSVISGLCALTEIIIVGDLCRKLFSKTLRYEHAVLLAYDRYQEAM
SFCLQTLRNLDLHKQWGLESKRDNTSMSANTFYNSARERNEFFQCLFFIL
TVKSRKYANVDKRSQKYVAQVLRNGANGESLETLKADVKRWLLCYDYDVD
STSPNTTDSSIEMDSKLKKPYRKHLCKSFSFGCLKRANEMK*

spliced messenger RNA

>Gcaud9478.t1 ID=Gcaud9478.t1|Name=Gcaud9478.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at NODE_318_length_30347_cov_4.399028:667..1992- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGACCTATGTTGTTTTTCGAGATGGAGCAACGACTACAATCTCACA
GCCTATCACTGATGTGGAGATCGCAGTGGTTTGTCTTTCATATATTTTTG
CAATGATGTCAGTGCTGCTCAGGTTCAGGGGCGAGGGAAATCCAAGGGAT
CCACTGACAATACCGTTTGTCAATCTGATCTTCATTTTCATAAGCATAGC
AATTTCAATGGTGGCTTTAGTGTTGGCATTCACCAACCTCATCTCCCTTG
ACGCAATGGCCGCAGCTACCATTGGATTGATTCCATCCTTACATTTATTG
CGTACCATACAGTTCCTTGAGCTCAAGATCAGATGGCTTGTATTCTGGCG
AGTGTACGGCGGCACGGAGGGAATGTTCTTCTACTATCGAGTAAGAACTG
AAAAGCCTGGCTTTGCTCAAGACCGAGTTTCACAAGAGCGATTGCATATA
ATCTACTACCCGCATCAAGTACGAATCATTCGGATTTTTCTTCTGCTTCG
GAACGCTTTCTATCGAGCGTTTGCGTGCTGCTGCACTAAGCCCGAGTCCG
ACAAGTACTTAAGTCGCTTCTTCCGAGACGAAAGGATACCAAAAGAGGAG
AGAAACGAAAGGAAGTTTTGGACGGGTTATCATGTTGAGGAGTACAAAAG
CGGCATTGTGCTTACGCAGAGTCGTCAATACGGGGGTGCCTGGTTTGAGA
TTGAAAGAGTCCTTGGAGGCCACACTTTGGCAACAGATCCATCGAAAGTA
CATGCTGGCACAAGCTCGTCGGTTATTAGCGGTCTATGTGCACTGACAGA
GATAATTATCGTCGGAGACTTGTGCAGGAAACTATTCTCGAAAACGTTGA
GATACGAACACGCAGTTCTGCTGGCTTATGACAGGTATCAAGAGGCAATG
TCGTTCTGCCTCCAAACACTTCGCAATCTGGATTTGCACAAGCAATGGGG
TCTTGAATCAAAACGGGACAACACGTCAATGTCCGCGAACACGTTCTACA
ACAGCGCAAGGGAAAGAAATGAATTCTTCCAATGCCTTTTCTTCATCTTG
ACTGTGAAGTCAAGAAAGTATGCGAACGTCGACAAAAGATCTCAGAAGTA
TGTCGCGCAAGTGCTTCGTAACGGTGCGAACGGTGAATCACTTGAAACAC
TAAAAGCCGATGTTAAAAGGTGGTTACTTTGTTATGACTACGACGTAGAT
TCCACATCGCCAAACACAACAGATTCATCAATCGAAATGGACTCGAAACT
GAAGAAACCGTATCGGAAACACCTGTGCAAATCGTTCTCCTTTGGATGCT
TAAAGCGTGCTAATGAGATGAAATAG

protein sequence of Gcaud9478.t1

>Gcaud9478.t1 ID=Gcaud9478.t1|Name=Gcaud9478.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=442bp
MRTYVVFRDGATTTISQPITDVEIAVVCLSYIFAMMSVLLRFRGEGNPRD
PLTIPFVNLIFIFISIAISMVALVLAFTNLISLDAMAAATIGLIPSLHLL
RTIQFLELKIRWLVFWRVYGGTEGMFFYYRVRTEKPGFAQDRVSQERLHI
IYYPHQVRIIRIFLLLRNAFYRAFACCCTKPESDKYLSRFFRDERIPKEE
RNERKFWTGYHVEEYKSGIVLTQSRQYGGAWFEIERVLGGHTLATDPSKV
HAGTSSSVISGLCALTEIIIVGDLCRKLFSKTLRYEHAVLLAYDRYQEAM
SFCLQTLRNLDLHKQWGLESKRDNTSMSANTFYNSARERNEFFQCLFFIL
TVKSRKYANVDKRSQKYVAQVLRNGANGESLETLKADVKRWLLCYDYDVD
STSPNTTDSSIEMDSKLKKPYRKHLCKSFSFGCLKRANEMK*

mRNA from alignment at NODE_318_length_30347_cov_4.399028:667..1992-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9478.t1 ID=Gcaud9478.t1|Name=Gcaud9478.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at NODE_318_length_30347_cov_4.399028:667..1992- (Gracilaria caudata M_176_S67 male)
ATGAGGACCTATGTTGTTTTTCGAGATGGAGCAACGACTACAATCTCACA
GCCTATCACTGATGTGGAGATCGCAGTGGTTTGTCTTTCATATATTTTTG
CAATGATGTCAGTGCTGCTCAGGTTCAGGGGCGAGGGAAATCCAAGGGAT
CCACTGACAATACCGTTTGTCAATCTGATCTTCATTTTCATAAGCATAGC
AATTTCAATGGTGGCTTTAGTGTTGGCATTCACCAACCTCATCTCCCTTG
ACGCAATGGCCGCAGCTACCATTGGATTGATTCCATCCTTACATTTATTG
CGTACCATACAGTTCCTTGAGCTCAAGATCAGATGGCTTGTATTCTGGCG
AGTGTACGGCGGCACGGAGGGAATGTTCTTCTACTATCGAGTAAGAACTG
AAAAGCCTGGCTTTGCTCAAGACCGAGTTTCACAAGAGCGATTGCATATA
ATCTACTACCCGCATCAAGTACGAATCATTCGGATTTTTCTTCTGCTTCG
GAACGCTTTCTATCGAGCGTTTGCGTGCTGCTGCACTAAGCCCGAGTCCG
ACAAGTACTTAAGTCGCTTCTTCCGAGACGAAAGGATACCAAAAGAGGAG
AGAAACGAAAGGAAGTTTTGGACGGGTTATCATGTTGAGGAGTACAAAAG
CGGCATTGTGCTTACGCAGAGTCGTCAATACGGGGGTGCCTGGTTTGAGA
TTGAAAGAGTCCTTGGAGGCCACACTTTGGCAACAGATCCATCGAAAGTA
CATGCTGGCACAAGCTCGTCGGTTATTAGCGGTCTATGTGCACTGACAGA
GATAATTATCGTCGGAGACTTGTGCAGGAAACTATTCTCGAAAACGTTGA
GATACGAACACGCAGTTCTGCTGGCTTATGACAGGTATCAAGAGGCAATG
TCGTTCTGCCTCCAAACACTTCGCAATCTGGATTTGCACAAGCAATGGGG
TCTTGAATCAAAACGGGACAACACGTCAATGTCCGCGAACACGTTCTACA
ACAGCGCAAGGGAAAGAAATGAATTCTTCCAATGCCTTTTCTTCATCTTG
ACTGTGAAGTCAAGAAAGTATGCGAACGTCGACAAAAGATCTCAGAAGTA
TGTCGCGCAAGTGCTTCGTAACGGTGCGAACGGTGAATCACTTGAAACAC
TAAAAGCCGATGTTAAAAGGTGGTTACTTTGTTATGACTACGACGTAGAT
TCCACATCGCCAAACACAACAGATTCATCAATCGAAATGGACTCGAAACT
GAAGAAACCGTATCGGAAACACCTGTGCAAATCGTTCTCCTTTGGATGCT
TAAAGCGTGCTAATGAGATGAAATAG

Coding sequence (CDS) from alignment at NODE_318_length_30347_cov_4.399028:667..1992-

>Gcaud9478.t1 ID=Gcaud9478.t1|Name=Gcaud9478.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1326bp|location=Sequence derived from alignment at NODE_318_length_30347_cov_4.399028:667..1992- (Gracilaria caudata M_176_S67 male)
ATGAGGACCTATGTTGTTTTTCGAGATGGAGCAACGACTACAATCTCACA
GCCTATCACTGATGTGGAGATCGCAGTGGTTTGTCTTTCATATATTTTTG
CAATGATGTCAGTGCTGCTCAGGTTCAGGGGCGAGGGAAATCCAAGGGAT
CCACTGACAATACCGTTTGTCAATCTGATCTTCATTTTCATAAGCATAGC
AATTTCAATGGTGGCTTTAGTGTTGGCATTCACCAACCTCATCTCCCTTG
ACGCAATGGCCGCAGCTACCATTGGATTGATTCCATCCTTACATTTATTG
CGTACCATACAGTTCCTTGAGCTCAAGATCAGATGGCTTGTATTCTGGCG
AGTGTACGGCGGCACGGAGGGAATGTTCTTCTACTATCGAGTAAGAACTG
AAAAGCCTGGCTTTGCTCAAGACCGAGTTTCACAAGAGCGATTGCATATA
ATCTACTACCCGCATCAAGTACGAATCATTCGGATTTTTCTTCTGCTTCG
GAACGCTTTCTATCGAGCGTTTGCGTGCTGCTGCACTAAGCCCGAGTCCG
ACAAGTACTTAAGTCGCTTCTTCCGAGACGAAAGGATACCAAAAGAGGAG
AGAAACGAAAGGAAGTTTTGGACGGGTTATCATGTTGAGGAGTACAAAAG
CGGCATTGTGCTTACGCAGAGTCGTCAATACGGGGGTGCCTGGTTTGAGA
TTGAAAGAGTCCTTGGAGGCCACACTTTGGCAACAGATCCATCGAAAGTA
CATGCTGGCACAAGCTCGTCGGTTATTAGCGGTCTATGTGCACTGACAGA
GATAATTATCGTCGGAGACTTGTGCAGGAAACTATTCTCGAAAACGTTGA
GATACGAACACGCAGTTCTGCTGGCTTATGACAGGTATCAAGAGGCAATG
TCGTTCTGCCTCCAAACACTTCGCAATCTGGATTTGCACAAGCAATGGGG
TCTTGAATCAAAACGGGACAACACGTCAATGTCCGCGAACACGTTCTACA
ACAGCGCAAGGGAAAGAAATGAATTCTTCCAATGCCTTTTCTTCATCTTG
ACTGTGAAGTCAAGAAAGTATGCGAACGTCGACAAAAGATCTCAGAAGTA
TGTCGCGCAAGTGCTTCGTAACGGTGCGAACGGTGAATCACTTGAAACAC
TAAAAGCCGATGTTAAAAGGTGGTTACTTTGTTATGACTACGACGTAGAT
TCCACATCGCCAAACACAACAGATTCATCAATCGAAATGGACTCGAAACT
GAAGAAACCGTATCGGAAACACCTGTGCAAATCGTTCTCCTTTGGATGCT
TAAAGCGTGCTAATGAGATGAAATAG