Gcaud947.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud947.t1
Unique Name	Gcaud947.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	493

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_962_length_15678_cov_4.652467	contig	NODE_962_length_15678_cov_4.652467:12214..13692 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002594848.1
Max annot lvl	33154\|Opisthokonta
Evalue	4.05e-21
EggNOG OGs	2DYIH@1\|root,2S6UY@2759\|Eukaryota,3AAPQ@33154\|Opisthokonta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud947	Gcaud947	Gracilaria caudata M_176_S67 male	gene	NODE_962_length_15678_cov_4.652467 12214..13692 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud947.t1.start1	Gcaud947.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_962_length_15678_cov_4.652467 12214..12216 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud947.t1.CDS1	Gcaud947.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_962_length_15678_cov_4.652467 12214..13692 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud947.t1.exon1	Gcaud947.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_962_length_15678_cov_4.652467 12214..13692 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud947.t1.stop1	Gcaud947.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_962_length_15678_cov_4.652467 13690..13692 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud947.t1	Gcaud947.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_962_length_15678_cov_4.652467 12214..13692 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_962_length_15678_cov_4.652467:12214..13692+
coding sequence from alignment at NODE_962_length_15678_cov_4.652467:12214..13692+

mRNA sequence

>Gcaud947.t1 ID=Gcaud947.t1|Name=Gcaud947.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=493bp
MDSVQTGMEGLKAMVSGTAKLADLFTATGTSVMGRIASFASYTKTGLANC
LERLADSLSRLGHRMSKWLSKVVGGASKALISISAKSVKVVCERLGKNLE
EFMATRIGPVFSLAGIAFSIAAIAEGDTGLSLGADIADILSCSLELFAAA
GEWAFGAILGEELISVMVAVAGPLAIVLAIIGIGLALAAMFTNKPNPVED
FVNNQATEAGLALTSACNAVDYVSISYMSKSKGYEVLGASLSPGSNGKWL
CGKTGTNVVLGVNDFTPNYVIQIVTDGEGLSTISTAVGNESDGYSSILYL
CATKSEDSSSQIISFENAYSEDTDDFNPQKWRCSSTSSEATLEDGHFSSM
QMSIEHVNEDGSKGDGFLQLDSGNNIVLGSNETSWTLEMEGIKPVEMSIT
TPMKYASQHTICVQQKYLPSFVMTPSESMSYSYDGTLPAFLTFDKTNGAV
TPEGTIATPEGDTKYKLHAENPLGSASTSFTVSVQPGADVGS*

spliced messenger RNA

>Gcaud947.t1 ID=Gcaud947.t1|Name=Gcaud947.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at NODE_962_length_15678_cov_4.652467:12214..13692+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTGTTCAGACGGGAATGGAGGGTCTGAAAGCCATGGTTTCAGG
TACAGCAAAGCTCGCAGATCTTTTTACCGCAACAGGAACATCAGTAATGG
GGAGAATTGCTTCGTTTGCCTCTTATACCAAAACTGGTCTTGCAAATTGT
CTTGAACGACTGGCCGACTCGCTTAGCAGACTAGGACACAGAATGAGCAA
ATGGCTTTCCAAAGTTGTCGGTGGGGCTTCAAAGGCGTTGATATCGATAT
CGGCAAAAAGCGTTAAGGTGGTTTGTGAGAGACTGGGAAAGAATTTGGAA
GAATTCATGGCCACTCGAATTGGACCAGTCTTCAGTCTGGCTGGAATCGC
CTTCAGTATTGCAGCTATTGCTGAAGGTGATACTGGACTATCGCTTGGAG
CAGATATAGCTGATATTCTGAGTTGTTCCCTAGAACTCTTCGCTGCAGCT
GGTGAGTGGGCCTTTGGGGCAATACTTGGAGAAGAGCTAATATCTGTCAT
GGTGGCTGTGGCTGGTCCTCTGGCGATTGTACTGGCCATCATCGGAATAG
GCCTTGCTCTTGCTGCAATGTTTACAAACAAGCCCAACCCTGTTGAGGAT
TTTGTCAACAATCAAGCAACTGAGGCTGGTCTTGCATTAACTTCCGCTTG
TAATGCAGTCGACTACGTTTCGATTTCTTATATGTCAAAATCGAAGGGAT
ATGAGGTACTAGGTGCATCACTTTCTCCCGGTTCGAATGGAAAGTGGCTC
TGTGGCAAAACGGGAACCAATGTCGTGTTGGGCGTCAACGACTTCACGCC
GAATTATGTGATTCAAATCGTGACGGATGGAGAAGGTCTGAGCACTATTT
CTACTGCTGTCGGAAACGAGTCGGACGGATACTCAAGTATATTGTACTTG
TGCGCCACGAAGAGCGAAGACAGTAGTTCGCAGATCATTTCGTTTGAGAA
TGCGTATTCTGAAGATACTGATGACTTCAATCCTCAGAAATGGAGATGCA
GTAGTACCAGCTCGGAGGCTACTTTGGAAGACGGCCATTTTTCAAGCATG
CAAATGAGTATCGAACACGTTAATGAGGATGGATCGAAGGGAGATGGTTT
TCTGCAATTGGATTCCGGAAACAACATCGTGCTCGGCTCAAACGAAACTT
CTTGGACTCTGGAAATGGAGGGTATAAAGCCCGTTGAAATGTCGATCACT
ACGCCGATGAAGTATGCTTCACAGCATACCATCTGCGTTCAGCAGAAGTA
TCTTCCCAGCTTCGTGATGACGCCAAGCGAGAGCATGAGTTATTCGTATG
ATGGCACATTGCCAGCATTTCTTACGTTTGACAAGACGAATGGAGCCGTG
ACTCCTGAAGGGACAATTGCGACACCTGAGGGAGATACGAAGTACAAACT
TCATGCAGAGAATCCACTGGGGTCAGCTAGCACGAGTTTCACGGTCTCGG
TCCAACCAGGGGCAGACGTTGGCTCTTGA

protein sequence of Gcaud947.t1

>Gcaud947.t1 ID=Gcaud947.t1|Name=Gcaud947.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=493bp
MDSVQTGMEGLKAMVSGTAKLADLFTATGTSVMGRIASFASYTKTGLANC
LERLADSLSRLGHRMSKWLSKVVGGASKALISISAKSVKVVCERLGKNLE
EFMATRIGPVFSLAGIAFSIAAIAEGDTGLSLGADIADILSCSLELFAAA
GEWAFGAILGEELISVMVAVAGPLAIVLAIIGIGLALAAMFTNKPNPVED
FVNNQATEAGLALTSACNAVDYVSISYMSKSKGYEVLGASLSPGSNGKWL
CGKTGTNVVLGVNDFTPNYVIQIVTDGEGLSTISTAVGNESDGYSSILYL
CATKSEDSSSQIISFENAYSEDTDDFNPQKWRCSSTSSEATLEDGHFSSM
QMSIEHVNEDGSKGDGFLQLDSGNNIVLGSNETSWTLEMEGIKPVEMSIT
TPMKYASQHTICVQQKYLPSFVMTPSESMSYSYDGTLPAFLTFDKTNGAV
TPEGTIATPEGDTKYKLHAENPLGSASTSFTVSVQPGADVGS*

mRNA from alignment at NODE_962_length_15678_cov_4.652467:12214..13692+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud947.t1 ID=Gcaud947.t1|Name=Gcaud947.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at NODE_962_length_15678_cov_4.652467:12214..13692+ (Gracilaria caudata M_176_S67 male)
ATGGATTCTGTTCAGACGGGAATGGAGGGTCTGAAAGCCATGGTTTCAGG
TACAGCAAAGCTCGCAGATCTTTTTACCGCAACAGGAACATCAGTAATGG
GGAGAATTGCTTCGTTTGCCTCTTATACCAAAACTGGTCTTGCAAATTGT
CTTGAACGACTGGCCGACTCGCTTAGCAGACTAGGACACAGAATGAGCAA
ATGGCTTTCCAAAGTTGTCGGTGGGGCTTCAAAGGCGTTGATATCGATAT
CGGCAAAAAGCGTTAAGGTGGTTTGTGAGAGACTGGGAAAGAATTTGGAA
GAATTCATGGCCACTCGAATTGGACCAGTCTTCAGTCTGGCTGGAATCGC
CTTCAGTATTGCAGCTATTGCTGAAGGTGATACTGGACTATCGCTTGGAG
CAGATATAGCTGATATTCTGAGTTGTTCCCTAGAACTCTTCGCTGCAGCT
GGTGAGTGGGCCTTTGGGGCAATACTTGGAGAAGAGCTAATATCTGTCAT
GGTGGCTGTGGCTGGTCCTCTGGCGATTGTACTGGCCATCATCGGAATAG
GCCTTGCTCTTGCTGCAATGTTTACAAACAAGCCCAACCCTGTTGAGGAT
TTTGTCAACAATCAAGCAACTGAGGCTGGTCTTGCATTAACTTCCGCTTG
TAATGCAGTCGACTACGTTTCGATTTCTTATATGTCAAAATCGAAGGGAT
ATGAGGTACTAGGTGCATCACTTTCTCCCGGTTCGAATGGAAAGTGGCTC
TGTGGCAAAACGGGAACCAATGTCGTGTTGGGCGTCAACGACTTCACGCC
GAATTATGTGATTCAAATCGTGACGGATGGAGAAGGTCTGAGCACTATTT
CTACTGCTGTCGGAAACGAGTCGGACGGATACTCAAGTATATTGTACTTG
TGCGCCACGAAGAGCGAAGACAGTAGTTCGCAGATCATTTCGTTTGAGAA
TGCGTATTCTGAAGATACTGATGACTTCAATCCTCAGAAATGGAGATGCA
GTAGTACCAGCTCGGAGGCTACTTTGGAAGACGGCCATTTTTCAAGCATG
CAAATGAGTATCGAACACGTTAATGAGGATGGATCGAAGGGAGATGGTTT
TCTGCAATTGGATTCCGGAAACAACATCGTGCTCGGCTCAAACGAAACTT
CTTGGACTCTGGAAATGGAGGGTATAAAGCCCGTTGAAATGTCGATCACT
ACGCCGATGAAGTATGCTTCACAGCATACCATCTGCGTTCAGCAGAAGTA
TCTTCCCAGCTTCGTGATGACGCCAAGCGAGAGCATGAGTTATTCGTATG
ATGGCACATTGCCAGCATTTCTTACGTTTGACAAGACGAATGGAGCCGTG
ACTCCTGAAGGGACAATTGCGACACCTGAGGGAGATACGAAGTACAAACT
TCATGCAGAGAATCCACTGGGGTCAGCTAGCACGAGTTTCACGGTCTCGG
TCCAACCAGGGGCAGACGTTGGCTCTTGA

Coding sequence (CDS) from alignment at NODE_962_length_15678_cov_4.652467:12214..13692+

>Gcaud947.t1 ID=Gcaud947.t1|Name=Gcaud947.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1479bp|location=Sequence derived from alignment at NODE_962_length_15678_cov_4.652467:12214..13692+ (Gracilaria caudata M_176_S67 male)
ATGGATTCTGTTCAGACGGGAATGGAGGGTCTGAAAGCCATGGTTTCAGG
TACAGCAAAGCTCGCAGATCTTTTTACCGCAACAGGAACATCAGTAATGG
GGAGAATTGCTTCGTTTGCCTCTTATACCAAAACTGGTCTTGCAAATTGT
CTTGAACGACTGGCCGACTCGCTTAGCAGACTAGGACACAGAATGAGCAA
ATGGCTTTCCAAAGTTGTCGGTGGGGCTTCAAAGGCGTTGATATCGATAT
CGGCAAAAAGCGTTAAGGTGGTTTGTGAGAGACTGGGAAAGAATTTGGAA
GAATTCATGGCCACTCGAATTGGACCAGTCTTCAGTCTGGCTGGAATCGC
CTTCAGTATTGCAGCTATTGCTGAAGGTGATACTGGACTATCGCTTGGAG
CAGATATAGCTGATATTCTGAGTTGTTCCCTAGAACTCTTCGCTGCAGCT
GGTGAGTGGGCCTTTGGGGCAATACTTGGAGAAGAGCTAATATCTGTCAT
GGTGGCTGTGGCTGGTCCTCTGGCGATTGTACTGGCCATCATCGGAATAG
GCCTTGCTCTTGCTGCAATGTTTACAAACAAGCCCAACCCTGTTGAGGAT
TTTGTCAACAATCAAGCAACTGAGGCTGGTCTTGCATTAACTTCCGCTTG
TAATGCAGTCGACTACGTTTCGATTTCTTATATGTCAAAATCGAAGGGAT
ATGAGGTACTAGGTGCATCACTTTCTCCCGGTTCGAATGGAAAGTGGCTC
TGTGGCAAAACGGGAACCAATGTCGTGTTGGGCGTCAACGACTTCACGCC
GAATTATGTGATTCAAATCGTGACGGATGGAGAAGGTCTGAGCACTATTT
CTACTGCTGTCGGAAACGAGTCGGACGGATACTCAAGTATATTGTACTTG
TGCGCCACGAAGAGCGAAGACAGTAGTTCGCAGATCATTTCGTTTGAGAA
TGCGTATTCTGAAGATACTGATGACTTCAATCCTCAGAAATGGAGATGCA
GTAGTACCAGCTCGGAGGCTACTTTGGAAGACGGCCATTTTTCAAGCATG
CAAATGAGTATCGAACACGTTAATGAGGATGGATCGAAGGGAGATGGTTT
TCTGCAATTGGATTCCGGAAACAACATCGTGCTCGGCTCAAACGAAACTT
CTTGGACTCTGGAAATGGAGGGTATAAAGCCCGTTGAAATGTCGATCACT
ACGCCGATGAAGTATGCTTCACAGCATACCATCTGCGTTCAGCAGAAGTA
TCTTCCCAGCTTCGTGATGACGCCAAGCGAGAGCATGAGTTATTCGTATG
ATGGCACATTGCCAGCATTTCTTACGTTTGACAAGACGAATGGAGCCGTG
ACTCCTGAAGGGACAATTGCGACACCTGAGGGAGATACGAAGTACAAACT
TCATGCAGAGAATCCACTGGGGTCAGCTAGCACGAGTTTCACGGTCTCGG
TCCAACCAGGGGCAGACGTTGGCTCTTGA