Gcaud9460.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9460.t1
Unique Name	Gcaud9460.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	184

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_258_length_33686_cov_5.184015	contig	NODE_258_length_33686_cov_5.184015:27389..28105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707451.1
Preferred name	TIMM17A
PFAMs	Tim17
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K16608,ko:K17795,ko:K19382
KEGG TC	3.A.8.1
GOs	GO:0000002,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005744,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010954,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019222,GO:0019866,GO:0019867,GO:0019899,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030162,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0045862,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0055085,GO:0060255,GO:0065002,GO:0065007,GO:0070013,GO:0070585,GO:0070613,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098805,GO:1903317,GO:1903319,GO:1904680,GO:1990542
Evalue	1.11e-69
EggNOG OGs	COG5596@1\|root,KOG1652@2759\|Eukaryota
Description	protein import into mitochondrial matrix
COG category	U
BRITE	ko00000,ko01000,ko02000,ko03029,ko03036,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9460	Gcaud9460	Gracilaria caudata M_176_S67 male	gene	NODE_258_length_33686_cov_5.184015 27389..28105 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9460.t1	Gcaud9460.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_258_length_33686_cov_5.184015 27389..28105 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9460.t1.start1	Gcaud9460.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_258_length_33686_cov_5.184015 27389..27391 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9460.t1.CDS1	Gcaud9460.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_258_length_33686_cov_5.184015 27389..27470 +
Gcaud9460.t1.CDS2	Gcaud9460.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_258_length_33686_cov_5.184015 27636..28105 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9460.t1.exon1	Gcaud9460.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_258_length_33686_cov_5.184015 27389..27470 +
Gcaud9460.t1.exon2	Gcaud9460.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_258_length_33686_cov_5.184015 27636..28105 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9460.t1.intron1	Gcaud9460.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_258_length_33686_cov_5.184015 27471..27635 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9460.t1.stop1	Gcaud9460.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_258_length_33686_cov_5.184015 28103..28105 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_258_length_33686_cov_5.184015:27389..28105+
coding sequence from alignment at NODE_258_length_33686_cov_5.184015:27389..28105+

mRNA sequence

>Gcaud9460.t1 ID=Gcaud9460.t1|Name=Gcaud9460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=184bp
MNFDVPSEPEGRMVDHQREPCPHRIIDDFGGAFAMGAIGGTIWHFIKGAR
NSPNGARLIGAIDAVKVRAPALGGSFAVWGGLFSSFDCTLQAIRKKEDPW
NTISSGALTGGLLSSRSGLRAAGKNAIVGGVLLALIEGASIVITRYASQQ
ALSPEEIQKLREEMERAQAKQRNEGLGAIGQLS*

spliced messenger RNA

>Gcaud9460.t1 ID=Gcaud9460.t1|Name=Gcaud9460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=552bp|location=Sequence derived from alignment at NODE_258_length_33686_cov_5.184015:27389..28105+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTCGATGTTCCATCAGAACCTGAAGGTCGAATGGTCGACCATCA
GCGAGAGCCATGTCCTCACAGAATAATAGATGATTTCGGAGGTGCTTTCG
CAATGGGTGCAATCGGCGGTACGATTTGGCACTTCATAAAAGGCGCTCGA
AACTCTCCCAACGGAGCTCGTCTCATCGGTGCCATAGACGCTGTGAAGGT
TCGTGCGCCCGCTTTAGGTGGAAGTTTTGCGGTGTGGGGTGGCCTTTTCT
CTTCATTTGACTGTACACTTCAAGCAATTAGAAAGAAAGAAGATCCTTGG
AACACCATATCGTCAGGTGCGCTTACTGGAGGCTTACTGTCGAGCCGCTC
AGGCTTGCGTGCCGCGGGGAAGAATGCCATTGTCGGAGGTGTGCTCTTGG
CCTTGATTGAAGGTGCAAGCATCGTCATCACAAGATATGCCAGCCAGCAA
GCACTCTCACCAGAGGAGATTCAGAAGCTTAGAGAAGAAATGGAGCGCGC
TCAAGCAAAACAGCGTAATGAAGGGCTTGGGGCCATAGGTCAGCTCTCAT
GA

protein sequence of Gcaud9460.t1

>Gcaud9460.t1 ID=Gcaud9460.t1|Name=Gcaud9460.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=184bp
MNFDVPSEPEGRMVDHQREPCPHRIIDDFGGAFAMGAIGGTIWHFIKGAR
NSPNGARLIGAIDAVKVRAPALGGSFAVWGGLFSSFDCTLQAIRKKEDPW
NTISSGALTGGLLSSRSGLRAAGKNAIVGGVLLALIEGASIVITRYASQQ
ALSPEEIQKLREEMERAQAKQRNEGLGAIGQLS*

mRNA from alignment at NODE_258_length_33686_cov_5.184015:27389..28105+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9460.t1 ID=Gcaud9460.t1|Name=Gcaud9460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=717bp|location=Sequence derived from alignment at NODE_258_length_33686_cov_5.184015:27389..28105+ (Gracilaria caudata M_176_S67 male)
ATGAATTTCGATGTTCCATCAGAACCTGAAGGTCGAATGGTCGACCATCA
GCGAGAGCCATGTCCTCACAGAATAATAGATGGTAAGCATATTTCGCTCG
CATTAGTACTTCAACACTACCGAGCATACTCAATGGTCTCTACAGCGTGG
CGGTAAAGATACTGAAGTAATGCCGCTTAGCTTTACAGATTAACTGTTCT
AACATGACGGTCTCGCGTTTTTGTTATGCTGATGCTGGTGGACCTAGATT
TCGGAGGTGCTTTCGCAATGGGTGCAATCGGCGGTACGATTTGGCACTTC
ATAAAAGGCGCTCGAAACTCTCCCAACGGAGCTCGTCTCATCGGTGCCAT
AGACGCTGTGAAGGTTCGTGCGCCCGCTTTAGGTGGAAGTTTTGCGGTGT
GGGGTGGCCTTTTCTCTTCATTTGACTGTACACTTCAAGCAATTAGAAAG
AAAGAAGATCCTTGGAACACCATATCGTCAGGTGCGCTTACTGGAGGCTT
ACTGTCGAGCCGCTCAGGCTTGCGTGCCGCGGGGAAGAATGCCATTGTCG
GAGGTGTGCTCTTGGCCTTGATTGAAGGTGCAAGCATCGTCATCACAAGA
TATGCCAGCCAGCAAGCACTCTCACCAGAGGAGATTCAGAAGCTTAGAGA
AGAAATGGAGCGCGCTCAAGCAAAACAGCGTAATGAAGGGCTTGGGGCCA
TAGGTCAGCTCTCATGA

Coding sequence (CDS) from alignment at NODE_258_length_33686_cov_5.184015:27389..28105+

>Gcaud9460.t1 ID=Gcaud9460.t1|Name=Gcaud9460.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=552bp|location=Sequence derived from alignment at NODE_258_length_33686_cov_5.184015:27389..28105+ (Gracilaria caudata M_176_S67 male)
ATGAATTTCGATGTTCCATCAGAACCTGAAGGTCGAATGGTCGACCATCA
GCGAGAGCCATGTCCTCACAGAATAATAGATGATTTCGGAGGTGCTTTCG
CAATGGGTGCAATCGGCGGTACGATTTGGCACTTCATAAAAGGCGCTCGA
AACTCTCCCAACGGAGCTCGTCTCATCGGTGCCATAGACGCTGTGAAGGT
TCGTGCGCCCGCTTTAGGTGGAAGTTTTGCGGTGTGGGGTGGCCTTTTCT
CTTCATTTGACTGTACACTTCAAGCAATTAGAAAGAAAGAAGATCCTTGG
AACACCATATCGTCAGGTGCGCTTACTGGAGGCTTACTGTCGAGCCGCTC
AGGCTTGCGTGCCGCGGGGAAGAATGCCATTGTCGGAGGTGTGCTCTTGG
CCTTGATTGAAGGTGCAAGCATCGTCATCACAAGATATGCCAGCCAGCAA
GCACTCTCACCAGAGGAGATTCAGAAGCTTAGAGAAGAAATGGAGCGCGC
TCAAGCAAAACAGCGTAATGAAGGGCTTGGGGCCATAGGTCAGCTCTCAT
GA