Gcaud941.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud941.t1
Unique NameGcaud941.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1335_length_11330_cov_4.824362contigNODE_1335_length_11330_cov_4.824362:4955..6190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709105.1
PFAMsNAD_kinase
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00858
KEGG ReactionR00104
KEGG Pathwayko00760,ko01100,map00760,map01100
Evalue1.06e-103
EggNOG OGsCOG0061@1|root,KOG2178@2759|Eukaryota
EC2.7.1.23
DescriptionNADP biosynthetic process
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud941Gcaud941Gracilaria caudata M_176_S67 malegeneNODE_1335_length_11330_cov_4.824362 4955..6190 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud941.t1.stop1Gcaud941.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1335_length_11330_cov_4.824362 4955..4957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud941.t1.CDS1Gcaud941.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1335_length_11330_cov_4.824362 4955..6190 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud941.t1.exon1Gcaud941.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1335_length_11330_cov_4.824362 4955..6190 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud941.t1.start1Gcaud941.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1335_length_11330_cov_4.824362 6188..6190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud941.t1Gcaud941.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1335_length_11330_cov_4.824362 4955..6190 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud941.t1 ID=Gcaud941.t1|Name=Gcaud941.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=412bp
MANARDSSPGTSKMMQTSQAEVMPEFQNGFSREEESSHVQLHHEPRDIVP
VSVDDKPRLVLIAVTPNSKRAQSALPRLMSYLSSQPHVVVAVDRVLSPFC
PVSTPTVRPASDEEHEKSSDQYEASEVDLVICIGGDGLIFHVLHKFFPTR
VPPFVPFNMGSLGFLTPFDFASFEQHIAAILRGANNNVTPRMRLKCVVMR
CGSRSACIHNFHHNILTDGQARGVEEYHVLNELVIDRGPAPYLSNLEVLA
DDCPVTRVQGDGLIVATPTGSTAYSLSSGGSMVHPSVPAILFTPICPHSL
SFRPVLFPEHVTLQIKVPRDSRATAWVSFDGRHRMELMKGDKVVISVSPW
AVPTFNKKDATRDWFASVSRCLRWNERVIQGATEAQYYCENREKDSVGSP
QEIKAECHSVP*
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spliced messenger RNA

>Gcaud941.t1 ID=Gcaud941.t1|Name=Gcaud941.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at NODE_1335_length_11330_cov_4.824362:4955..6190- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAATGCAAGAGATTCTTCCCCCGGCACTTCAAAGATGATGCAAAC
AAGTCAAGCTGAAGTGATGCCAGAATTTCAGAATGGGTTTTCAAGAGAAG
AAGAGTCTTCGCATGTACAACTGCATCACGAGCCTCGCGATATCGTTCCC
GTGTCCGTGGATGATAAGCCACGCCTTGTCCTTATTGCAGTCACGCCAAA
TTCAAAGCGAGCACAGTCTGCGTTGCCAAGATTGATGTCCTACTTGTCAT
CGCAACCCCACGTTGTGGTTGCAGTCGACAGGGTACTTTCACCTTTCTGT
CCGGTTTCCACCCCAACTGTAAGACCGGCGTCAGATGAAGAGCATGAAAA
AAGTTCTGATCAATACGAGGCTTCGGAAGTTGATCTTGTTATCTGCATTG
GAGGGGATGGTCTTATATTTCATGTTCTTCATAAATTCTTTCCAACTCGC
GTACCACCGTTTGTTCCTTTCAACATGGGCTCCTTGGGATTCCTGACACC
ATTTGATTTTGCCAGTTTTGAACAACACATTGCTGCGATTCTTCGTGGTG
CCAATAACAATGTAACACCCCGAATGCGTCTAAAATGCGTAGTGATGCGT
TGTGGATCTCGTTCTGCTTGCATACACAACTTTCATCACAATATACTGAC
AGACGGACAGGCGCGAGGAGTGGAGGAGTATCACGTTCTGAATGAACTAG
TGATTGATCGAGGTCCAGCCCCTTACCTTTCAAACCTCGAAGTTTTGGCA
GATGATTGTCCTGTCACACGCGTTCAAGGCGATGGGCTTATCGTTGCGAC
ACCAACAGGTTCCACAGCATATTCGTTATCATCTGGCGGTAGCATGGTAC
ATCCCAGTGTACCAGCAATCCTATTCACACCAATATGTCCTCATTCTCTT
TCATTCCGTCCTGTTCTTTTCCCAGAACATGTGACTCTACAGATCAAGGT
ACCAAGAGACTCACGGGCAACGGCATGGGTCAGCTTTGATGGGCGGCACC
GTATGGAACTAATGAAAGGTGACAAAGTGGTTATAAGTGTATCTCCGTGG
GCGGTACCTACTTTCAACAAGAAGGACGCGACCCGCGACTGGTTTGCAAG
CGTAAGCCGGTGCTTGAGGTGGAACGAACGTGTAATCCAAGGCGCAACGG
AAGCACAATACTACTGTGAAAATCGCGAGAAGGATAGCGTGGGATCCCCT
CAGGAGATAAAAGCCGAATGTCATAGTGTACCTTAG
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protein sequence of Gcaud941.t1

>Gcaud941.t1 ID=Gcaud941.t1|Name=Gcaud941.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=412bp
MANARDSSPGTSKMMQTSQAEVMPEFQNGFSREEESSHVQLHHEPRDIVP
VSVDDKPRLVLIAVTPNSKRAQSALPRLMSYLSSQPHVVVAVDRVLSPFC
PVSTPTVRPASDEEHEKSSDQYEASEVDLVICIGGDGLIFHVLHKFFPTR
VPPFVPFNMGSLGFLTPFDFASFEQHIAAILRGANNNVTPRMRLKCVVMR
CGSRSACIHNFHHNILTDGQARGVEEYHVLNELVIDRGPAPYLSNLEVLA
DDCPVTRVQGDGLIVATPTGSTAYSLSSGGSMVHPSVPAILFTPICPHSL
SFRPVLFPEHVTLQIKVPRDSRATAWVSFDGRHRMELMKGDKVVISVSPW
AVPTFNKKDATRDWFASVSRCLRWNERVIQGATEAQYYCENREKDSVGSP
QEIKAECHSVP*
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mRNA from alignment at NODE_1335_length_11330_cov_4.824362:4955..6190-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud941.t1 ID=Gcaud941.t1|Name=Gcaud941.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at NODE_1335_length_11330_cov_4.824362:4955..6190- (Gracilaria caudata M_176_S67 male)
ATGGCAAATGCAAGAGATTCTTCCCCCGGCACTTCAAAGATGATGCAAAC
AAGTCAAGCTGAAGTGATGCCAGAATTTCAGAATGGGTTTTCAAGAGAAG
AAGAGTCTTCGCATGTACAACTGCATCACGAGCCTCGCGATATCGTTCCC
GTGTCCGTGGATGATAAGCCACGCCTTGTCCTTATTGCAGTCACGCCAAA
TTCAAAGCGAGCACAGTCTGCGTTGCCAAGATTGATGTCCTACTTGTCAT
CGCAACCCCACGTTGTGGTTGCAGTCGACAGGGTACTTTCACCTTTCTGT
CCGGTTTCCACCCCAACTGTAAGACCGGCGTCAGATGAAGAGCATGAAAA
AAGTTCTGATCAATACGAGGCTTCGGAAGTTGATCTTGTTATCTGCATTG
GAGGGGATGGTCTTATATTTCATGTTCTTCATAAATTCTTTCCAACTCGC
GTACCACCGTTTGTTCCTTTCAACATGGGCTCCTTGGGATTCCTGACACC
ATTTGATTTTGCCAGTTTTGAACAACACATTGCTGCGATTCTTCGTGGTG
CCAATAACAATGTAACACCCCGAATGCGTCTAAAATGCGTAGTGATGCGT
TGTGGATCTCGTTCTGCTTGCATACACAACTTTCATCACAATATACTGAC
AGACGGACAGGCGCGAGGAGTGGAGGAGTATCACGTTCTGAATGAACTAG
TGATTGATCGAGGTCCAGCCCCTTACCTTTCAAACCTCGAAGTTTTGGCA
GATGATTGTCCTGTCACACGCGTTCAAGGCGATGGGCTTATCGTTGCGAC
ACCAACAGGTTCCACAGCATATTCGTTATCATCTGGCGGTAGCATGGTAC
ATCCCAGTGTACCAGCAATCCTATTCACACCAATATGTCCTCATTCTCTT
TCATTCCGTCCTGTTCTTTTCCCAGAACATGTGACTCTACAGATCAAGGT
ACCAAGAGACTCACGGGCAACGGCATGGGTCAGCTTTGATGGGCGGCACC
GTATGGAACTAATGAAAGGTGACAAAGTGGTTATAAGTGTATCTCCGTGG
GCGGTACCTACTTTCAACAAGAAGGACGCGACCCGCGACTGGTTTGCAAG
CGTAAGCCGGTGCTTGAGGTGGAACGAACGTGTAATCCAAGGCGCAACGG
AAGCACAATACTACTGTGAAAATCGCGAGAAGGATAGCGTGGGATCCCCT
CAGGAGATAAAAGCCGAATGTCATAGTGTACCTTAG
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Coding sequence (CDS) from alignment at NODE_1335_length_11330_cov_4.824362:4955..6190-

>Gcaud941.t1 ID=Gcaud941.t1|Name=Gcaud941.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1236bp|location=Sequence derived from alignment at NODE_1335_length_11330_cov_4.824362:4955..6190- (Gracilaria caudata M_176_S67 male)
ATGGCAAATGCAAGAGATTCTTCCCCCGGCACTTCAAAGATGATGCAAAC
AAGTCAAGCTGAAGTGATGCCAGAATTTCAGAATGGGTTTTCAAGAGAAG
AAGAGTCTTCGCATGTACAACTGCATCACGAGCCTCGCGATATCGTTCCC
GTGTCCGTGGATGATAAGCCACGCCTTGTCCTTATTGCAGTCACGCCAAA
TTCAAAGCGAGCACAGTCTGCGTTGCCAAGATTGATGTCCTACTTGTCAT
CGCAACCCCACGTTGTGGTTGCAGTCGACAGGGTACTTTCACCTTTCTGT
CCGGTTTCCACCCCAACTGTAAGACCGGCGTCAGATGAAGAGCATGAAAA
AAGTTCTGATCAATACGAGGCTTCGGAAGTTGATCTTGTTATCTGCATTG
GAGGGGATGGTCTTATATTTCATGTTCTTCATAAATTCTTTCCAACTCGC
GTACCACCGTTTGTTCCTTTCAACATGGGCTCCTTGGGATTCCTGACACC
ATTTGATTTTGCCAGTTTTGAACAACACATTGCTGCGATTCTTCGTGGTG
CCAATAACAATGTAACACCCCGAATGCGTCTAAAATGCGTAGTGATGCGT
TGTGGATCTCGTTCTGCTTGCATACACAACTTTCATCACAATATACTGAC
AGACGGACAGGCGCGAGGAGTGGAGGAGTATCACGTTCTGAATGAACTAG
TGATTGATCGAGGTCCAGCCCCTTACCTTTCAAACCTCGAAGTTTTGGCA
GATGATTGTCCTGTCACACGCGTTCAAGGCGATGGGCTTATCGTTGCGAC
ACCAACAGGTTCCACAGCATATTCGTTATCATCTGGCGGTAGCATGGTAC
ATCCCAGTGTACCAGCAATCCTATTCACACCAATATGTCCTCATTCTCTT
TCATTCCGTCCTGTTCTTTTCCCAGAACATGTGACTCTACAGATCAAGGT
ACCAAGAGACTCACGGGCAACGGCATGGGTCAGCTTTGATGGGCGGCACC
GTATGGAACTAATGAAAGGTGACAAAGTGGTTATAAGTGTATCTCCGTGG
GCGGTACCTACTTTCAACAAGAAGGACGCGACCCGCGACTGGTTTGCAAG
CGTAAGCCGGTGCTTGAGGTGGAACGAACGTGTAATCCAAGGCGCAACGG
AAGCACAATACTACTGTGAAAATCGCGAGAAGGATAGCGTGGGATCCCCT
CAGGAGATAAAAGCCGAATGTCATAGTGTACCTTAG
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