Gcaud9368.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9368.t1
Unique Name	Gcaud9368.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	674

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_326_length_30007_cov_4.620136	contig	NODE_326_length_30007_cov_4.620136:3757..5778 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9368	Gcaud9368	Gracilaria caudata M_176_S67 male	gene	NODE_326_length_30007_cov_4.620136 3757..5778 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9368.t1.stop1	Gcaud9368.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_326_length_30007_cov_4.620136 3757..3759 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9368.t1.CDS1	Gcaud9368.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_326_length_30007_cov_4.620136 3757..5778 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9368.t1.exon1	Gcaud9368.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_326_length_30007_cov_4.620136 3757..5778 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9368.t1.start1	Gcaud9368.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_326_length_30007_cov_4.620136 5776..5778 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9368.t1	Gcaud9368.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_326_length_30007_cov_4.620136 3757..5778 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_326_length_30007_cov_4.620136:3757..5778-
coding sequence from alignment at NODE_326_length_30007_cov_4.620136:3757..5778-

mRNA sequence

>Gcaud9368.t1 ID=Gcaud9368.t1|Name=Gcaud9368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=674bp
MDLITKIEDMDARGMRQAIQGLLNQLSQTHQLSYTVQAAADTLQDNRILN
NALKECIFHLKHQSTYQTMPAPGGEDLRAVRLILVGFVYQIKSLIAGCFS
GVPLLTDGCPHGCHLNNERSVSRCKALRMLEMCGADLTAFCAVSYHIRII
NGLVVVALGNIRNANGLLEVFSEKIRTTGRSILVVADDNVCFDARLGQGL
HYIDIERFANRTVFRLEPFYQAVKDNWGLELAGLSYMKLLSDLQSLAGLE
GPLGGSILCSYFKGRKCSWSSMFVAVSDFCRESNNDQIQVRDNDGHLLTI
LLANGHVSIDHQDIKLTLPGSLAAAVVESWTFENNAVHISCLHDRHNIAA
SLSKLGWMYNDNDYDILMFLSSAVAVLEQKKEAQMALRDLKLYENAVRKM
ASMGNGDHEVFSDAWIEEHADMPKVERNEWYELAILLEDYEEPSASDEVN
FLTFGEWGRDIALVKSPGMEVSGMKIVPKEGWFPAECFRKRIQCHSMNSV
GSLSVRDERVRLTKVPKFLAGTVHFAKRVTGLGLAGALQLELGEYNADEG
HESAGVLDLAISGQLGDSSALWALEAIYMGKICISSDSPSTIKNCARQFS
DNGYCLEAVMPARIFNKVAVVTDGRDVYAVLGTGFRCVKVVKRNEMRYEL
ERATIGNIDGLERGVLCGGRTVG*

spliced messenger RNA

>Gcaud9368.t1 ID=Gcaud9368.t1|Name=Gcaud9368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2022bp|location=Sequence derived from alignment at NODE_326_length_30007_cov_4.620136:3757..5778- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTGATAACGAAGATAGAAGACATGGACGCAAGAGGCATGCGCCA
AGCAATACAAGGGTTGCTAAATCAACTCTCGCAGACACACCAACTCTCTT
ACACAGTTCAAGCGGCCGCCGACACCCTACAGGATAACCGAATTCTCAAT
AACGCACTTAAGGAATGTATATTTCATCTCAAACACCAATCTACTTATCA
AACAATGCCCGCCCCCGGAGGCGAAGATCTCCGCGCCGTGCGCCTAATTC
TTGTAGGTTTTGTATATCAGATCAAATCGTTGATTGCTGGTTGTTTCAGC
GGGGTTCCTCTTCTAACAGACGGATGTCCACATGGATGTCATCTTAACAA
CGAGCGCTCCGTTTCACGATGCAAAGCGTTACGAATGTTAGAAATGTGTG
GTGCTGATCTTACCGCTTTCTGCGCCGTGTCTTACCACATTCGCATTATC
AATGGCCTTGTTGTTGTTGCCCTCGGAAACATTCGGAATGCGAACGGCCT
TCTTGAAGTCTTCTCTGAAAAGATTAGAACAACTGGCCGAAGTATACTCG
TGGTTGCTGATGATAATGTTTGTTTTGACGCACGACTTGGCCAAGGTCTG
CATTATATAGATATCGAACGCTTTGCAAACCGCACTGTCTTTCGATTGGA
ACCGTTTTACCAGGCCGTGAAAGATAACTGGGGGCTTGAGTTGGCAGGTC
TCTCGTATATGAAGCTGTTATCGGACTTACAGAGTCTTGCTGGGTTGGAA
GGGCCGCTGGGAGGCTCGATTCTGTGCTCTTATTTCAAGGGTAGGAAATG
TTCGTGGAGTTCTATGTTCGTCGCTGTAAGCGACTTTTGCAGGGAAAGCA
ATAATGATCAAATCCAAGTTCGAGATAATGACGGCCACTTGCTCACGATT
CTGCTTGCTAACGGTCACGTCTCAATTGACCACCAAGACATCAAGCTCAC
CTTACCAGGAAGTCTTGCAGCAGCTGTCGTGGAGTCTTGGACATTTGAGA
ACAACGCTGTCCACATTTCTTGTTTACACGATCGTCACAATATTGCAGCT
TCATTATCAAAGTTAGGTTGGATGTATAATGATAATGACTATGACATTCT
AATGTTCTTATCCTCTGCAGTTGCTGTCTTGGAACAGAAGAAAGAAGCGC
AAATGGCTCTTCGCGATCTTAAACTGTATGAAAATGCCGTCAGAAAGATG
GCTTCAATGGGGAATGGCGATCATGAAGTGTTCTCGGATGCCTGGATTGA
AGAGCATGCCGATATGCCGAAGGTAGAAAGAAATGAATGGTATGAGCTTG
CCATTCTTCTCGAAGATTATGAAGAGCCATCTGCCAGCGACGAGGTTAAC
TTTCTTACCTTCGGTGAATGGGGAAGAGACATCGCACTGGTAAAATCACC
AGGAATGGAAGTGAGTGGCATGAAAATAGTGCCCAAAGAAGGATGGTTTC
CAGCGGAATGCTTCAGAAAACGGATTCAATGCCACTCTATGAATAGTGTA
GGCAGTCTTTCCGTGCGGGACGAACGTGTCCGTTTGACGAAAGTGCCTAA
GTTCTTGGCAGGTACGGTTCACTTTGCTAAGCGTGTGACAGGCTTGGGCT
TGGCTGGGGCTTTGCAACTGGAACTAGGAGAGTACAACGCTGATGAAGGA
CATGAATCGGCGGGTGTGCTAGATCTGGCCATTTCGGGACAATTAGGAGA
TTCTTCCGCGTTATGGGCGCTCGAAGCCATTTACATGGGCAAAATCTGCA
TATCATCGGACAGTCCATCAACCATCAAGAATTGTGCCAGGCAGTTTAGT
GATAATGGATACTGTTTGGAGGCAGTTATGCCAGCTCGTATATTTAACAA
AGTGGCAGTAGTCACGGATGGTCGTGATGTGTACGCCGTCTTGGGCACCG
GATTTCGTTGTGTGAAGGTTGTGAAGAGAAATGAGATGAGATATGAGCTT
GAGAGGGCGACGATTGGTAATATTGATGGCTTGGAGCGGGGAGTACTTTG
TGGGGGTCGGACTGTGGGATGA

protein sequence of Gcaud9368.t1

>Gcaud9368.t1 ID=Gcaud9368.t1|Name=Gcaud9368.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=674bp
MDLITKIEDMDARGMRQAIQGLLNQLSQTHQLSYTVQAAADTLQDNRILN
NALKECIFHLKHQSTYQTMPAPGGEDLRAVRLILVGFVYQIKSLIAGCFS
GVPLLTDGCPHGCHLNNERSVSRCKALRMLEMCGADLTAFCAVSYHIRII
NGLVVVALGNIRNANGLLEVFSEKIRTTGRSILVVADDNVCFDARLGQGL
HYIDIERFANRTVFRLEPFYQAVKDNWGLELAGLSYMKLLSDLQSLAGLE
GPLGGSILCSYFKGRKCSWSSMFVAVSDFCRESNNDQIQVRDNDGHLLTI
LLANGHVSIDHQDIKLTLPGSLAAAVVESWTFENNAVHISCLHDRHNIAA
SLSKLGWMYNDNDYDILMFLSSAVAVLEQKKEAQMALRDLKLYENAVRKM
ASMGNGDHEVFSDAWIEEHADMPKVERNEWYELAILLEDYEEPSASDEVN
FLTFGEWGRDIALVKSPGMEVSGMKIVPKEGWFPAECFRKRIQCHSMNSV
GSLSVRDERVRLTKVPKFLAGTVHFAKRVTGLGLAGALQLELGEYNADEG
HESAGVLDLAISGQLGDSSALWALEAIYMGKICISSDSPSTIKNCARQFS
DNGYCLEAVMPARIFNKVAVVTDGRDVYAVLGTGFRCVKVVKRNEMRYEL
ERATIGNIDGLERGVLCGGRTVG*

mRNA from alignment at NODE_326_length_30007_cov_4.620136:3757..5778-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9368.t1 ID=Gcaud9368.t1|Name=Gcaud9368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2022bp|location=Sequence derived from alignment at NODE_326_length_30007_cov_4.620136:3757..5778- (Gracilaria caudata M_176_S67 male)
ATGGATTTGATAACGAAGATAGAAGACATGGACGCAAGAGGCATGCGCCA
AGCAATACAAGGGTTGCTAAATCAACTCTCGCAGACACACCAACTCTCTT
ACACAGTTCAAGCGGCCGCCGACACCCTACAGGATAACCGAATTCTCAAT
AACGCACTTAAGGAATGTATATTTCATCTCAAACACCAATCTACTTATCA
AACAATGCCCGCCCCCGGAGGCGAAGATCTCCGCGCCGTGCGCCTAATTC
TTGTAGGTTTTGTATATCAGATCAAATCGTTGATTGCTGGTTGTTTCAGC
GGGGTTCCTCTTCTAACAGACGGATGTCCACATGGATGTCATCTTAACAA
CGAGCGCTCCGTTTCACGATGCAAAGCGTTACGAATGTTAGAAATGTGTG
GTGCTGATCTTACCGCTTTCTGCGCCGTGTCTTACCACATTCGCATTATC
AATGGCCTTGTTGTTGTTGCCCTCGGAAACATTCGGAATGCGAACGGCCT
TCTTGAAGTCTTCTCTGAAAAGATTAGAACAACTGGCCGAAGTATACTCG
TGGTTGCTGATGATAATGTTTGTTTTGACGCACGACTTGGCCAAGGTCTG
CATTATATAGATATCGAACGCTTTGCAAACCGCACTGTCTTTCGATTGGA
ACCGTTTTACCAGGCCGTGAAAGATAACTGGGGGCTTGAGTTGGCAGGTC
TCTCGTATATGAAGCTGTTATCGGACTTACAGAGTCTTGCTGGGTTGGAA
GGGCCGCTGGGAGGCTCGATTCTGTGCTCTTATTTCAAGGGTAGGAAATG
TTCGTGGAGTTCTATGTTCGTCGCTGTAAGCGACTTTTGCAGGGAAAGCA
ATAATGATCAAATCCAAGTTCGAGATAATGACGGCCACTTGCTCACGATT
CTGCTTGCTAACGGTCACGTCTCAATTGACCACCAAGACATCAAGCTCAC
CTTACCAGGAAGTCTTGCAGCAGCTGTCGTGGAGTCTTGGACATTTGAGA
ACAACGCTGTCCACATTTCTTGTTTACACGATCGTCACAATATTGCAGCT
TCATTATCAAAGTTAGGTTGGATGTATAATGATAATGACTATGACATTCT
AATGTTCTTATCCTCTGCAGTTGCTGTCTTGGAACAGAAGAAAGAAGCGC
AAATGGCTCTTCGCGATCTTAAACTGTATGAAAATGCCGTCAGAAAGATG
GCTTCAATGGGGAATGGCGATCATGAAGTGTTCTCGGATGCCTGGATTGA
AGAGCATGCCGATATGCCGAAGGTAGAAAGAAATGAATGGTATGAGCTTG
CCATTCTTCTCGAAGATTATGAAGAGCCATCTGCCAGCGACGAGGTTAAC
TTTCTTACCTTCGGTGAATGGGGAAGAGACATCGCACTGGTAAAATCACC
AGGAATGGAAGTGAGTGGCATGAAAATAGTGCCCAAAGAAGGATGGTTTC
CAGCGGAATGCTTCAGAAAACGGATTCAATGCCACTCTATGAATAGTGTA
GGCAGTCTTTCCGTGCGGGACGAACGTGTCCGTTTGACGAAAGTGCCTAA
GTTCTTGGCAGGTACGGTTCACTTTGCTAAGCGTGTGACAGGCTTGGGCT
TGGCTGGGGCTTTGCAACTGGAACTAGGAGAGTACAACGCTGATGAAGGA
CATGAATCGGCGGGTGTGCTAGATCTGGCCATTTCGGGACAATTAGGAGA
TTCTTCCGCGTTATGGGCGCTCGAAGCCATTTACATGGGCAAAATCTGCA
TATCATCGGACAGTCCATCAACCATCAAGAATTGTGCCAGGCAGTTTAGT
GATAATGGATACTGTTTGGAGGCAGTTATGCCAGCTCGTATATTTAACAA
AGTGGCAGTAGTCACGGATGGTCGTGATGTGTACGCCGTCTTGGGCACCG
GATTTCGTTGTGTGAAGGTTGTGAAGAGAAATGAGATGAGATATGAGCTT
GAGAGGGCGACGATTGGTAATATTGATGGCTTGGAGCGGGGAGTACTTTG
TGGGGGTCGGACTGTGGGATGA

Coding sequence (CDS) from alignment at NODE_326_length_30007_cov_4.620136:3757..5778-

>Gcaud9368.t1 ID=Gcaud9368.t1|Name=Gcaud9368.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2022bp|location=Sequence derived from alignment at NODE_326_length_30007_cov_4.620136:3757..5778- (Gracilaria caudata M_176_S67 male)
ATGGATTTGATAACGAAGATAGAAGACATGGACGCAAGAGGCATGCGCCA
AGCAATACAAGGGTTGCTAAATCAACTCTCGCAGACACACCAACTCTCTT
ACACAGTTCAAGCGGCCGCCGACACCCTACAGGATAACCGAATTCTCAAT
AACGCACTTAAGGAATGTATATTTCATCTCAAACACCAATCTACTTATCA
AACAATGCCCGCCCCCGGAGGCGAAGATCTCCGCGCCGTGCGCCTAATTC
TTGTAGGTTTTGTATATCAGATCAAATCGTTGATTGCTGGTTGTTTCAGC
GGGGTTCCTCTTCTAACAGACGGATGTCCACATGGATGTCATCTTAACAA
CGAGCGCTCCGTTTCACGATGCAAAGCGTTACGAATGTTAGAAATGTGTG
GTGCTGATCTTACCGCTTTCTGCGCCGTGTCTTACCACATTCGCATTATC
AATGGCCTTGTTGTTGTTGCCCTCGGAAACATTCGGAATGCGAACGGCCT
TCTTGAAGTCTTCTCTGAAAAGATTAGAACAACTGGCCGAAGTATACTCG
TGGTTGCTGATGATAATGTTTGTTTTGACGCACGACTTGGCCAAGGTCTG
CATTATATAGATATCGAACGCTTTGCAAACCGCACTGTCTTTCGATTGGA
ACCGTTTTACCAGGCCGTGAAAGATAACTGGGGGCTTGAGTTGGCAGGTC
TCTCGTATATGAAGCTGTTATCGGACTTACAGAGTCTTGCTGGGTTGGAA
GGGCCGCTGGGAGGCTCGATTCTGTGCTCTTATTTCAAGGGTAGGAAATG
TTCGTGGAGTTCTATGTTCGTCGCTGTAAGCGACTTTTGCAGGGAAAGCA
ATAATGATCAAATCCAAGTTCGAGATAATGACGGCCACTTGCTCACGATT
CTGCTTGCTAACGGTCACGTCTCAATTGACCACCAAGACATCAAGCTCAC
CTTACCAGGAAGTCTTGCAGCAGCTGTCGTGGAGTCTTGGACATTTGAGA
ACAACGCTGTCCACATTTCTTGTTTACACGATCGTCACAATATTGCAGCT
TCATTATCAAAGTTAGGTTGGATGTATAATGATAATGACTATGACATTCT
AATGTTCTTATCCTCTGCAGTTGCTGTCTTGGAACAGAAGAAAGAAGCGC
AAATGGCTCTTCGCGATCTTAAACTGTATGAAAATGCCGTCAGAAAGATG
GCTTCAATGGGGAATGGCGATCATGAAGTGTTCTCGGATGCCTGGATTGA
AGAGCATGCCGATATGCCGAAGGTAGAAAGAAATGAATGGTATGAGCTTG
CCATTCTTCTCGAAGATTATGAAGAGCCATCTGCCAGCGACGAGGTTAAC
TTTCTTACCTTCGGTGAATGGGGAAGAGACATCGCACTGGTAAAATCACC
AGGAATGGAAGTGAGTGGCATGAAAATAGTGCCCAAAGAAGGATGGTTTC
CAGCGGAATGCTTCAGAAAACGGATTCAATGCCACTCTATGAATAGTGTA
GGCAGTCTTTCCGTGCGGGACGAACGTGTCCGTTTGACGAAAGTGCCTAA
GTTCTTGGCAGGTACGGTTCACTTTGCTAAGCGTGTGACAGGCTTGGGCT
TGGCTGGGGCTTTGCAACTGGAACTAGGAGAGTACAACGCTGATGAAGGA
CATGAATCGGCGGGTGTGCTAGATCTGGCCATTTCGGGACAATTAGGAGA
TTCTTCCGCGTTATGGGCGCTCGAAGCCATTTACATGGGCAAAATCTGCA
TATCATCGGACAGTCCATCAACCATCAAGAATTGTGCCAGGCAGTTTAGT
GATAATGGATACTGTTTGGAGGCAGTTATGCCAGCTCGTATATTTAACAA
AGTGGCAGTAGTCACGGATGGTCGTGATGTGTACGCCGTCTTGGGCACCG
GATTTCGTTGTGTGAAGGTTGTGAAGAGAAATGAGATGAGATATGAGCTT
GAGAGGGCGACGATTGGTAATATTGATGGCTTGGAGCGGGGAGTACTTTG
TGGGGGTCGGACTGTGGGATGA