Gcaud9367.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9367.t1
Unique Name	Gcaud9367.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	732

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_326_length_30007_cov_4.620136	contig	NODE_326_length_30007_cov_4.620136:840..3035 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_002734747.1
PFAMs	GRDP-like
Max annot lvl	33208\|Metazoa
Evalue	3.44e-45
EggNOG OGs	28JC1@1\|root,2QRQZ@2759\|Eukaryota,38E6R@33154\|Opisthokonta,3BHPZ@33208\|Metazoa,3D58M@33213\|Bilateria
Description	Glycine-rich domain-containing protein-like
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9367	Gcaud9367	Gracilaria caudata M_176_S67 male	gene	NODE_326_length_30007_cov_4.620136 840..3035 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9367.t1.stop1	Gcaud9367.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_326_length_30007_cov_4.620136 840..842 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9367.t1.CDS1	Gcaud9367.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_326_length_30007_cov_4.620136 840..3035 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9367.t1.exon1	Gcaud9367.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_326_length_30007_cov_4.620136 840..3035 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9367.t1.start1	Gcaud9367.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_326_length_30007_cov_4.620136 3033..3035 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9367.t1	Gcaud9367.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_326_length_30007_cov_4.620136 840..3035 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_326_length_30007_cov_4.620136:840..3035-
coding sequence from alignment at NODE_326_length_30007_cov_4.620136:840..3035-

mRNA sequence

>Gcaud9367.t1 ID=Gcaud9367.t1|Name=Gcaud9367.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=732bp
MNRFTFIRHGSSSEARRGLLPSVKALVSVLNEVDKYPALYFNHIVLREAI
RRYEQLWIPLLANAKPEQRSRLVPPLDVEWVWFCHMLCPFKYATDSAAMW
QAVRPNEPDVIVDHELLPPKKRLAGKLEAEELWRQMFPHEPFDNTDVIKN
APLQVSHTAVTNSTMGGSSMEPSRISYDIVAAAERQMVFQYQVCIMPQYQ
EDKFLRSALQRYHKFLKLQQLHPDQVWVPTYDIDVCWHAHMLHPRWYNTK
TVKLRGSVLKHDDTLNDRTTGSELNQRWDATVTAWAQISPSPLRCAGGMW
RGNVETSERVLRPALVEMIAALHVDCSSPAKGIYRIWDADMSAMELSAGL
DWVHRTEWRWKNHPASGSSSQDSTQRSLERYTCIGQTNEDAILVSRTTHF
LMYCNISNAKPNRHSSVVEVYGCKASAHRPSYPLATAHLVLPNSMCGSTS
FFISTRKCVASPEETVFVLRVGGEDFALLAGEWADFESPRKGIPGIPGDM
EAGRHGVPGTRGTRGHRGFLKLRLWLLSASSHTKWLHFKPSGTRKKPLIY
SFSLPSLSVAGGIRAGKVSFSLETSKLQVKHVSQLLPTFLISTAAAALYV
SLQPRFTPHGGAHIGSHETMYPAWSAGQKDYAIIRGAGGEVPTAQGNHGL
GIMLLELGNGSWDCNDFPGSPRRLFKINTNPKNVRQRGRYTLRSPLFAGI
VDDIGDPNGANLAGCGGCGGCGGCGGCATCG*

spliced messenger RNA

>Gcaud9367.t1 ID=Gcaud9367.t1|Name=Gcaud9367.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2196bp|location=Sequence derived from alignment at NODE_326_length_30007_cov_4.620136:840..3035- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGCTTCACCTTTATCCGCCATGGGAGCTCATCGGAGGCAAGGCG
AGGTCTGCTGCCGTCTGTGAAGGCATTAGTCTCAGTTCTTAACGAAGTTG
ACAAGTATCCGGCTTTGTATTTCAATCACATCGTGCTACGGGAGGCCATC
CGCCGCTATGAGCAGTTGTGGATCCCCCTTCTCGCGAATGCCAAGCCTGA
GCAGCGTTCGCGTCTTGTTCCGCCGCTTGACGTCGAATGGGTTTGGTTCT
GCCATATGCTGTGCCCATTCAAGTACGCCACTGACTCCGCCGCTATGTGG
CAGGCCGTGCGCCCTAACGAGCCTGACGTTATTGTTGACCACGAGCTGCT
GCCACCGAAGAAAAGACTGGCTGGAAAGTTGGAGGCTGAAGAACTGTGGC
GACAGATGTTTCCGCACGAGCCCTTCGACAACACCGATGTTATCAAGAAC
GCCCCGCTTCAAGTGTCCCACACGGCCGTCACAAACTCCACGATGGGTGG
TTCCTCTATGGAGCCGTCACGCATCTCCTACGACATCGTAGCCGCTGCAG
AACGACAGATGGTCTTTCAGTATCAGGTTTGCATTATGCCGCAGTATCAA
GAGGACAAGTTTCTCCGGTCAGCCCTCCAACGGTACCACAAGTTTCTCAA
ATTGCAGCAGTTGCACCCGGACCAGGTGTGGGTTCCGACTTATGATATCG
ACGTATGCTGGCACGCTCATATGCTGCACCCACGTTGGTACAACACCAAG
ACAGTGAAGTTGCGGGGATCGGTGCTCAAACATGATGATACGCTCAACGA
CAGAACCACTGGATCCGAGCTCAACCAGCGCTGGGATGCGACCGTCACAG
CCTGGGCACAGATTTCTCCTTCTCCACTACGGTGCGCAGGTGGAATGTGG
AGGGGAAATGTTGAAACCTCGGAAAGAGTATTAAGACCGGCTCTCGTTGA
GATGATTGCTGCTCTACATGTGGACTGCTCGTCCCCAGCAAAAGGTATAT
ACAGAATTTGGGATGCTGACATGAGTGCAATGGAGTTAAGTGCCGGTTTG
GACTGGGTTCACAGGACAGAATGGCGTTGGAAGAATCATCCTGCCTCTGG
CAGCAGCAGCCAAGACAGTACTCAGCGCAGTTTGGAACGATATACTTGCA
TCGGACAAACGAACGAAGATGCCATCCTTGTAAGCCGAACGACACACTTT
CTGATGTACTGTAACATTTCCAACGCTAAACCAAATCGTCATTCCTCAGT
GGTGGAGGTGTACGGATGTAAGGCGTCTGCACACAGACCAAGCTATCCGT
TGGCTACAGCGCACCTCGTGCTCCCGAATAGCATGTGTGGCTCGACGTCG
TTCTTCATTTCGACTAGAAAATGCGTTGCATCTCCTGAAGAGACGGTCTT
TGTTTTGAGGGTTGGTGGAGAAGACTTCGCTCTCCTTGCTGGCGAGTGGG
CAGACTTTGAGTCTCCTCGGAAGGGCATTCCTGGAATTCCAGGTGACATG
GAGGCTGGAAGGCATGGAGTGCCTGGCACTAGAGGAACGCGTGGCCATCG
CGGATTTCTGAAGCTTCGTTTATGGCTACTAAGCGCGAGCTCTCATACGA
AGTGGCTCCACTTCAAGCCCTCGGGCACGAGAAAGAAACCGCTGATTTAT
TCCTTCTCGCTACCGTCTCTTTCAGTTGCAGGAGGTATCCGTGCAGGTAA
AGTGAGTTTCAGTCTTGAAACTTCAAAACTGCAGGTTAAGCATGTGAGCC
AACTCTTGCCAACATTTCTGATAAGCACGGCAGCAGCAGCGCTCTACGTG
TCCCTACAGCCAAGATTCACCCCTCATGGTGGAGCACACATTGGCAGCCA
TGAAACGATGTATCCCGCTTGGTCTGCGGGGCAGAAAGACTACGCCATCA
TTCGAGGAGCAGGTGGAGAAGTGCCCACTGCGCAGGGTAACCATGGTTTA
GGGATCATGCTGCTCGAACTTGGGAACGGCTCATGGGATTGTAACGACTT
TCCAGGGTCTCCAAGGCGATTGTTTAAGATCAATACGAATCCGAAAAACG
TGCGCCAGCGTGGCAGATACACACTGAGAAGCCCGCTGTTCGCCGGGATT
GTCGATGACATTGGCGATCCTAATGGGGCGAATCTTGCTGGGTGCGGTGG
ATGTGGAGGCTGTGGTGGGTGCGGCGGTTGCGCTACGTGCGGCTGA

protein sequence of Gcaud9367.t1

>Gcaud9367.t1 ID=Gcaud9367.t1|Name=Gcaud9367.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=732bp
MNRFTFIRHGSSSEARRGLLPSVKALVSVLNEVDKYPALYFNHIVLREAI
RRYEQLWIPLLANAKPEQRSRLVPPLDVEWVWFCHMLCPFKYATDSAAMW
QAVRPNEPDVIVDHELLPPKKRLAGKLEAEELWRQMFPHEPFDNTDVIKN
APLQVSHTAVTNSTMGGSSMEPSRISYDIVAAAERQMVFQYQVCIMPQYQ
EDKFLRSALQRYHKFLKLQQLHPDQVWVPTYDIDVCWHAHMLHPRWYNTK
TVKLRGSVLKHDDTLNDRTTGSELNQRWDATVTAWAQISPSPLRCAGGMW
RGNVETSERVLRPALVEMIAALHVDCSSPAKGIYRIWDADMSAMELSAGL
DWVHRTEWRWKNHPASGSSSQDSTQRSLERYTCIGQTNEDAILVSRTTHF
LMYCNISNAKPNRHSSVVEVYGCKASAHRPSYPLATAHLVLPNSMCGSTS
FFISTRKCVASPEETVFVLRVGGEDFALLAGEWADFESPRKGIPGIPGDM
EAGRHGVPGTRGTRGHRGFLKLRLWLLSASSHTKWLHFKPSGTRKKPLIY
SFSLPSLSVAGGIRAGKVSFSLETSKLQVKHVSQLLPTFLISTAAAALYV
SLQPRFTPHGGAHIGSHETMYPAWSAGQKDYAIIRGAGGEVPTAQGNHGL
GIMLLELGNGSWDCNDFPGSPRRLFKINTNPKNVRQRGRYTLRSPLFAGI
VDDIGDPNGANLAGCGGCGGCGGCGGCATCG*

mRNA from alignment at NODE_326_length_30007_cov_4.620136:840..3035-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9367.t1 ID=Gcaud9367.t1|Name=Gcaud9367.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2196bp|location=Sequence derived from alignment at NODE_326_length_30007_cov_4.620136:840..3035- (Gracilaria caudata M_176_S67 male)
ATGAACCGCTTCACCTTTATCCGCCATGGGAGCTCATCGGAGGCAAGGCG
AGGTCTGCTGCCGTCTGTGAAGGCATTAGTCTCAGTTCTTAACGAAGTTG
ACAAGTATCCGGCTTTGTATTTCAATCACATCGTGCTACGGGAGGCCATC
CGCCGCTATGAGCAGTTGTGGATCCCCCTTCTCGCGAATGCCAAGCCTGA
GCAGCGTTCGCGTCTTGTTCCGCCGCTTGACGTCGAATGGGTTTGGTTCT
GCCATATGCTGTGCCCATTCAAGTACGCCACTGACTCCGCCGCTATGTGG
CAGGCCGTGCGCCCTAACGAGCCTGACGTTATTGTTGACCACGAGCTGCT
GCCACCGAAGAAAAGACTGGCTGGAAAGTTGGAGGCTGAAGAACTGTGGC
GACAGATGTTTCCGCACGAGCCCTTCGACAACACCGATGTTATCAAGAAC
GCCCCGCTTCAAGTGTCCCACACGGCCGTCACAAACTCCACGATGGGTGG
TTCCTCTATGGAGCCGTCACGCATCTCCTACGACATCGTAGCCGCTGCAG
AACGACAGATGGTCTTTCAGTATCAGGTTTGCATTATGCCGCAGTATCAA
GAGGACAAGTTTCTCCGGTCAGCCCTCCAACGGTACCACAAGTTTCTCAA
ATTGCAGCAGTTGCACCCGGACCAGGTGTGGGTTCCGACTTATGATATCG
ACGTATGCTGGCACGCTCATATGCTGCACCCACGTTGGTACAACACCAAG
ACAGTGAAGTTGCGGGGATCGGTGCTCAAACATGATGATACGCTCAACGA
CAGAACCACTGGATCCGAGCTCAACCAGCGCTGGGATGCGACCGTCACAG
CCTGGGCACAGATTTCTCCTTCTCCACTACGGTGCGCAGGTGGAATGTGG
AGGGGAAATGTTGAAACCTCGGAAAGAGTATTAAGACCGGCTCTCGTTGA
GATGATTGCTGCTCTACATGTGGACTGCTCGTCCCCAGCAAAAGGTATAT
ACAGAATTTGGGATGCTGACATGAGTGCAATGGAGTTAAGTGCCGGTTTG
GACTGGGTTCACAGGACAGAATGGCGTTGGAAGAATCATCCTGCCTCTGG
CAGCAGCAGCCAAGACAGTACTCAGCGCAGTTTGGAACGATATACTTGCA
TCGGACAAACGAACGAAGATGCCATCCTTGTAAGCCGAACGACACACTTT
CTGATGTACTGTAACATTTCCAACGCTAAACCAAATCGTCATTCCTCAGT
GGTGGAGGTGTACGGATGTAAGGCGTCTGCACACAGACCAAGCTATCCGT
TGGCTACAGCGCACCTCGTGCTCCCGAATAGCATGTGTGGCTCGACGTCG
TTCTTCATTTCGACTAGAAAATGCGTTGCATCTCCTGAAGAGACGGTCTT
TGTTTTGAGGGTTGGTGGAGAAGACTTCGCTCTCCTTGCTGGCGAGTGGG
CAGACTTTGAGTCTCCTCGGAAGGGCATTCCTGGAATTCCAGGTGACATG
GAGGCTGGAAGGCATGGAGTGCCTGGCACTAGAGGAACGCGTGGCCATCG
CGGATTTCTGAAGCTTCGTTTATGGCTACTAAGCGCGAGCTCTCATACGA
AGTGGCTCCACTTCAAGCCCTCGGGCACGAGAAAGAAACCGCTGATTTAT
TCCTTCTCGCTACCGTCTCTTTCAGTTGCAGGAGGTATCCGTGCAGGTAA
AGTGAGTTTCAGTCTTGAAACTTCAAAACTGCAGGTTAAGCATGTGAGCC
AACTCTTGCCAACATTTCTGATAAGCACGGCAGCAGCAGCGCTCTACGTG
TCCCTACAGCCAAGATTCACCCCTCATGGTGGAGCACACATTGGCAGCCA
TGAAACGATGTATCCCGCTTGGTCTGCGGGGCAGAAAGACTACGCCATCA
TTCGAGGAGCAGGTGGAGAAGTGCCCACTGCGCAGGGTAACCATGGTTTA
GGGATCATGCTGCTCGAACTTGGGAACGGCTCATGGGATTGTAACGACTT
TCCAGGGTCTCCAAGGCGATTGTTTAAGATCAATACGAATCCGAAAAACG
TGCGCCAGCGTGGCAGATACACACTGAGAAGCCCGCTGTTCGCCGGGATT
GTCGATGACATTGGCGATCCTAATGGGGCGAATCTTGCTGGGTGCGGTGG
ATGTGGAGGCTGTGGTGGGTGCGGCGGTTGCGCTACGTGCGGCTGA

Coding sequence (CDS) from alignment at NODE_326_length_30007_cov_4.620136:840..3035-

>Gcaud9367.t1 ID=Gcaud9367.t1|Name=Gcaud9367.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2196bp|location=Sequence derived from alignment at NODE_326_length_30007_cov_4.620136:840..3035- (Gracilaria caudata M_176_S67 male)
ATGAACCGCTTCACCTTTATCCGCCATGGGAGCTCATCGGAGGCAAGGCG
AGGTCTGCTGCCGTCTGTGAAGGCATTAGTCTCAGTTCTTAACGAAGTTG
ACAAGTATCCGGCTTTGTATTTCAATCACATCGTGCTACGGGAGGCCATC
CGCCGCTATGAGCAGTTGTGGATCCCCCTTCTCGCGAATGCCAAGCCTGA
GCAGCGTTCGCGTCTTGTTCCGCCGCTTGACGTCGAATGGGTTTGGTTCT
GCCATATGCTGTGCCCATTCAAGTACGCCACTGACTCCGCCGCTATGTGG
CAGGCCGTGCGCCCTAACGAGCCTGACGTTATTGTTGACCACGAGCTGCT
GCCACCGAAGAAAAGACTGGCTGGAAAGTTGGAGGCTGAAGAACTGTGGC
GACAGATGTTTCCGCACGAGCCCTTCGACAACACCGATGTTATCAAGAAC
GCCCCGCTTCAAGTGTCCCACACGGCCGTCACAAACTCCACGATGGGTGG
TTCCTCTATGGAGCCGTCACGCATCTCCTACGACATCGTAGCCGCTGCAG
AACGACAGATGGTCTTTCAGTATCAGGTTTGCATTATGCCGCAGTATCAA
GAGGACAAGTTTCTCCGGTCAGCCCTCCAACGGTACCACAAGTTTCTCAA
ATTGCAGCAGTTGCACCCGGACCAGGTGTGGGTTCCGACTTATGATATCG
ACGTATGCTGGCACGCTCATATGCTGCACCCACGTTGGTACAACACCAAG
ACAGTGAAGTTGCGGGGATCGGTGCTCAAACATGATGATACGCTCAACGA
CAGAACCACTGGATCCGAGCTCAACCAGCGCTGGGATGCGACCGTCACAG
CCTGGGCACAGATTTCTCCTTCTCCACTACGGTGCGCAGGTGGAATGTGG
AGGGGAAATGTTGAAACCTCGGAAAGAGTATTAAGACCGGCTCTCGTTGA
GATGATTGCTGCTCTACATGTGGACTGCTCGTCCCCAGCAAAAGGTATAT
ACAGAATTTGGGATGCTGACATGAGTGCAATGGAGTTAAGTGCCGGTTTG
GACTGGGTTCACAGGACAGAATGGCGTTGGAAGAATCATCCTGCCTCTGG
CAGCAGCAGCCAAGACAGTACTCAGCGCAGTTTGGAACGATATACTTGCA
TCGGACAAACGAACGAAGATGCCATCCTTGTAAGCCGAACGACACACTTT
CTGATGTACTGTAACATTTCCAACGCTAAACCAAATCGTCATTCCTCAGT
GGTGGAGGTGTACGGATGTAAGGCGTCTGCACACAGACCAAGCTATCCGT
TGGCTACAGCGCACCTCGTGCTCCCGAATAGCATGTGTGGCTCGACGTCG
TTCTTCATTTCGACTAGAAAATGCGTTGCATCTCCTGAAGAGACGGTCTT
TGTTTTGAGGGTTGGTGGAGAAGACTTCGCTCTCCTTGCTGGCGAGTGGG
CAGACTTTGAGTCTCCTCGGAAGGGCATTCCTGGAATTCCAGGTGACATG
GAGGCTGGAAGGCATGGAGTGCCTGGCACTAGAGGAACGCGTGGCCATCG
CGGATTTCTGAAGCTTCGTTTATGGCTACTAAGCGCGAGCTCTCATACGA
AGTGGCTCCACTTCAAGCCCTCGGGCACGAGAAAGAAACCGCTGATTTAT
TCCTTCTCGCTACCGTCTCTTTCAGTTGCAGGAGGTATCCGTGCAGGTAA
AGTGAGTTTCAGTCTTGAAACTTCAAAACTGCAGGTTAAGCATGTGAGCC
AACTCTTGCCAACATTTCTGATAAGCACGGCAGCAGCAGCGCTCTACGTG
TCCCTACAGCCAAGATTCACCCCTCATGGTGGAGCACACATTGGCAGCCA
TGAAACGATGTATCCCGCTTGGTCTGCGGGGCAGAAAGACTACGCCATCA
TTCGAGGAGCAGGTGGAGAAGTGCCCACTGCGCAGGGTAACCATGGTTTA
GGGATCATGCTGCTCGAACTTGGGAACGGCTCATGGGATTGTAACGACTT
TCCAGGGTCTCCAAGGCGATTGTTTAAGATCAATACGAATCCGAAAAACG
TGCGCCAGCGTGGCAGATACACACTGAGAAGCCCGCTGTTCGCCGGGATT
GTCGATGACATTGGCGATCCTAATGGGGCGAATCTTGCTGGGTGCGGTGG
ATGTGGAGGCTGTGGTGGGTGCGGCGGTTGCGCTACGTGCGGCTGA