Gcaud9344.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9344.t1
Unique Name	Gcaud9344.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1524_length_9953_cov_3.701683	contig	NODE_1524_length_9953_cov_3.701683:8679..9683 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708242.1
Max annot lvl	2759\|Eukaryota
Evalue	4.88e-33
EggNOG OGs	28RT2@1\|root,2QYGC@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9344	Gcaud9344	Gracilaria caudata M_176_S67 male	gene	NODE_1524_length_9953_cov_3.701683 8679..9683 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9344.t1.stop1	Gcaud9344.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1524_length_9953_cov_3.701683 8679..8681 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9344.t1.CDS1	Gcaud9344.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1524_length_9953_cov_3.701683 8679..9683 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9344.t1.exon1	Gcaud9344.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1524_length_9953_cov_3.701683 8679..9683 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9344.t1.start1	Gcaud9344.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1524_length_9953_cov_3.701683 9681..9683 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9344.t1	Gcaud9344.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1524_length_9953_cov_3.701683 8679..9683 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1524_length_9953_cov_3.701683:8679..9683-
coding sequence from alignment at NODE_1524_length_9953_cov_3.701683:8679..9683-

mRNA sequence

>Gcaud9344.t1 ID=Gcaud9344.t1|Name=Gcaud9344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
MALPLANKRPHPAYHVHPLHRAAFAAVLKQIPVAVEAMRRAAVRRHALPP
SVFILDWDDTCCATSFLERCGFMADLDSKIDECAPELASHLRVLESRVLS
LLKTAVSLGTVLIVTNAGDGWVELSSSRFLPAVRAFLENNYKLVKIISAR
ARYVDVYRDHPLQWKALTFFDELRSICATLPQPSQPLHVLVLGDSVGDQY
AAHVAANHLTMHGAAIVLKVVKFLERPTIDQLCRELSVLLDHISAMAAHH
DAFDVSMYKESSTPHQNNNCNQTHDQQHAHHSQTTQSQHHVQQKSTASAS
HDSASMLVKQSSSPSDAHAPLSPVSAMATCAAVV*

spliced messenger RNA

>Gcaud9344.t1 ID=Gcaud9344.t1|Name=Gcaud9344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_1524_length_9953_cov_3.701683:8679..9683- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTCCGCTGGCCAACAAGCGCCCGCATCCCGCGTACCACGTTCA
CCCTTTACATCGCGCCGCCTTCGCCGCCGTGCTCAAACAGATCCCCGTCG
CCGTCGAGGCCATGCGTCGCGCCGCCGTACGTCGCCATGCCCTTCCGCCT
TCGGTTTTCATTCTTGACTGGGACGACACTTGTTGCGCCACATCCTTCCT
TGAGCGTTGCGGCTTCATGGCCGATCTCGACTCCAAAATCGACGAATGCG
CCCCGGAACTGGCCTCGCATCTGCGCGTGTTGGAGAGTCGCGTGCTGTCA
TTGCTGAAGACCGCCGTCAGTTTGGGCACCGTGCTTATCGTTACCAACGC
CGGTGACGGCTGGGTTGAACTCAGTTCCAGTCGCTTTCTGCCCGCAGTGC
GCGCATTTTTGGAAAACAACTATAAGCTCGTCAAGATCATCTCGGCGCGC
GCGCGATATGTCGATGTGTACCGTGACCATCCGTTACAATGGAAGGCGCT
TACGTTTTTTGACGAACTACGCTCCATATGTGCCACATTACCGCAGCCAA
GTCAACCGCTTCATGTGCTCGTTCTGGGTGACTCCGTCGGTGATCAGTAT
GCCGCCCACGTCGCTGCGAACCATCTTACCATGCACGGCGCTGCCATCGT
GCTCAAGGTGGTCAAGTTTTTGGAAAGACCGACAATTGACCAACTGTGTC
GCGAGCTCTCGGTCTTACTGGATCACATCTCCGCCATGGCAGCCCACCAT
GACGCCTTCGACGTCAGCATGTACAAAGAGTCTTCCACACCCCACCAGAA
TAATAACTGTAACCAAACTCACGACCAACAACACGCACATCACTCTCAAA
CAACACAGTCTCAACACCACGTTCAACAGAAGAGCACCGCATCAGCATCT
CATGACTCGGCATCGATGCTCGTCAAACAGTCTTCTTCACCGTCCGATGC
TCATGCACCCTTATCACCGGTTTCAGCGATGGCTACGTGTGCGGCGGTTG
TATAG

protein sequence of Gcaud9344.t1

>Gcaud9344.t1 ID=Gcaud9344.t1|Name=Gcaud9344.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
MALPLANKRPHPAYHVHPLHRAAFAAVLKQIPVAVEAMRRAAVRRHALPP
SVFILDWDDTCCATSFLERCGFMADLDSKIDECAPELASHLRVLESRVLS
LLKTAVSLGTVLIVTNAGDGWVELSSSRFLPAVRAFLENNYKLVKIISAR
ARYVDVYRDHPLQWKALTFFDELRSICATLPQPSQPLHVLVLGDSVGDQY
AAHVAANHLTMHGAAIVLKVVKFLERPTIDQLCRELSVLLDHISAMAAHH
DAFDVSMYKESSTPHQNNNCNQTHDQQHAHHSQTTQSQHHVQQKSTASAS
HDSASMLVKQSSSPSDAHAPLSPVSAMATCAAVV*

mRNA from alignment at NODE_1524_length_9953_cov_3.701683:8679..9683-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9344.t1 ID=Gcaud9344.t1|Name=Gcaud9344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_1524_length_9953_cov_3.701683:8679..9683- (Gracilaria caudata M_176_S67 male)
ATGGCTCTTCCGCTGGCCAACAAGCGCCCGCATCCCGCGTACCACGTTCA
CCCTTTACATCGCGCCGCCTTCGCCGCCGTGCTCAAACAGATCCCCGTCG
CCGTCGAGGCCATGCGTCGCGCCGCCGTACGTCGCCATGCCCTTCCGCCT
TCGGTTTTCATTCTTGACTGGGACGACACTTGTTGCGCCACATCCTTCCT
TGAGCGTTGCGGCTTCATGGCCGATCTCGACTCCAAAATCGACGAATGCG
CCCCGGAACTGGCCTCGCATCTGCGCGTGTTGGAGAGTCGCGTGCTGTCA
TTGCTGAAGACCGCCGTCAGTTTGGGCACCGTGCTTATCGTTACCAACGC
CGGTGACGGCTGGGTTGAACTCAGTTCCAGTCGCTTTCTGCCCGCAGTGC
GCGCATTTTTGGAAAACAACTATAAGCTCGTCAAGATCATCTCGGCGCGC
GCGCGATATGTCGATGTGTACCGTGACCATCCGTTACAATGGAAGGCGCT
TACGTTTTTTGACGAACTACGCTCCATATGTGCCACATTACCGCAGCCAA
GTCAACCGCTTCATGTGCTCGTTCTGGGTGACTCCGTCGGTGATCAGTAT
GCCGCCCACGTCGCTGCGAACCATCTTACCATGCACGGCGCTGCCATCGT
GCTCAAGGTGGTCAAGTTTTTGGAAAGACCGACAATTGACCAACTGTGTC
GCGAGCTCTCGGTCTTACTGGATCACATCTCCGCCATGGCAGCCCACCAT
GACGCCTTCGACGTCAGCATGTACAAAGAGTCTTCCACACCCCACCAGAA
TAATAACTGTAACCAAACTCACGACCAACAACACGCACATCACTCTCAAA
CAACACAGTCTCAACACCACGTTCAACAGAAGAGCACCGCATCAGCATCT
CATGACTCGGCATCGATGCTCGTCAAACAGTCTTCTTCACCGTCCGATGC
TCATGCACCCTTATCACCGGTTTCAGCGATGGCTACGTGTGCGGCGGTTG
TATAG

Coding sequence (CDS) from alignment at NODE_1524_length_9953_cov_3.701683:8679..9683-

>Gcaud9344.t1 ID=Gcaud9344.t1|Name=Gcaud9344.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_1524_length_9953_cov_3.701683:8679..9683- (Gracilaria caudata M_176_S67 male)
ATGGCTCTTCCGCTGGCCAACAAGCGCCCGCATCCCGCGTACCACGTTCA
CCCTTTACATCGCGCCGCCTTCGCCGCCGTGCTCAAACAGATCCCCGTCG
CCGTCGAGGCCATGCGTCGCGCCGCCGTACGTCGCCATGCCCTTCCGCCT
TCGGTTTTCATTCTTGACTGGGACGACACTTGTTGCGCCACATCCTTCCT
TGAGCGTTGCGGCTTCATGGCCGATCTCGACTCCAAAATCGACGAATGCG
CCCCGGAACTGGCCTCGCATCTGCGCGTGTTGGAGAGTCGCGTGCTGTCA
TTGCTGAAGACCGCCGTCAGTTTGGGCACCGTGCTTATCGTTACCAACGC
CGGTGACGGCTGGGTTGAACTCAGTTCCAGTCGCTTTCTGCCCGCAGTGC
GCGCATTTTTGGAAAACAACTATAAGCTCGTCAAGATCATCTCGGCGCGC
GCGCGATATGTCGATGTGTACCGTGACCATCCGTTACAATGGAAGGCGCT
TACGTTTTTTGACGAACTACGCTCCATATGTGCCACATTACCGCAGCCAA
GTCAACCGCTTCATGTGCTCGTTCTGGGTGACTCCGTCGGTGATCAGTAT
GCCGCCCACGTCGCTGCGAACCATCTTACCATGCACGGCGCTGCCATCGT
GCTCAAGGTGGTCAAGTTTTTGGAAAGACCGACAATTGACCAACTGTGTC
GCGAGCTCTCGGTCTTACTGGATCACATCTCCGCCATGGCAGCCCACCAT
GACGCCTTCGACGTCAGCATGTACAAAGAGTCTTCCACACCCCACCAGAA
TAATAACTGTAACCAAACTCACGACCAACAACACGCACATCACTCTCAAA
CAACACAGTCTCAACACCACGTTCAACAGAAGAGCACCGCATCAGCATCT
CATGACTCGGCATCGATGCTCGTCAAACAGTCTTCTTCACCGTCCGATGC
TCATGCACCCTTATCACCGGTTTCAGCGATGGCTACGTGTGCGGCGGTTG
TATAG