Gcaud9321.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9321.t1
Unique NameGcaud9321.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1448_length_10592_cov_4.938196contigNODE_1448_length_10592_cov_4.938196:5823..6908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_005361-tr
Preferred nameLCMT2
PFAMsKelch_4,Kelch_5,Kelch_6,LCM
Max annot lvl33208|Metazoa
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K15451
KEGG ReactionR10586,R10587
GOsGO:0001510,GO:0003674,GO:0003824,GO:0003880,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006481,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008213,GO:0008276,GO:0008757,GO:0009058,GO:0009451,GO:0009987,GO:0010340,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0018410,GO:0019538,GO:0030488,GO:0031590,GO:0031591,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051998,GO:0071704,GO:0090304,GO:0140096,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue6.17e-36
EggNOG OGsKOG2918@1|root,KOG2918@2759|Eukaryota,39RWQ@33154|Opisthokonta,3B976@33208|Metazoa,3D1W7@33213|Bilateria
EC2.1.1.290,2.3.1.231
Descriptionwybutosine biosynthetic process
COG categoryO
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9321Gcaud9321Gracilaria caudata M_176_S67 malegeneNODE_1448_length_10592_cov_4.938196 5823..6908 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9321.t1.stop1Gcaud9321.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1448_length_10592_cov_4.938196 5823..5825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9321.t1.CDS1Gcaud9321.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1448_length_10592_cov_4.938196 5823..6908 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9321.t1.exon1Gcaud9321.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1448_length_10592_cov_4.938196 5823..6908 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9321.t1.start1Gcaud9321.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1448_length_10592_cov_4.938196 6906..6908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9321.t1Gcaud9321.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1448_length_10592_cov_4.938196 5823..6908 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9321.t1 ID=Gcaud9321.t1|Name=Gcaud9321.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=362bp
MAVRASTLNPTSPARCVLSESNVFAFISYVSAADKGYFYDPHLASIKARH
QNEFLEEIDLSPDSFYSLSPLSNRNTYVRVLLKRTLITTFLKNFKDDEVQ
IISLGSGLDTFAFQLFTEFQSSLPPIRFVELDLLSVVEEKLCLIQDILLN
NAVFDNRELGPSHCRAWKAHPTSLHKSFYHLQSCDLRDLEELRSSLSENR
IDFSRPTLILAEIVLVYLEPKHSDGLVNFFAERFSGPCCFLDFDHVNTEE
EFGTNMKKAFTELHLPLLGIEKYPSIDSHVKRFTKLGWDYCTGLTMYEGL
QKRLSKENMRKLEDIEYVDERERSRQILSHYGIIHAAKGFKDAKSFLASM
DLEECRDQSPY*
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spliced messenger RNA

>Gcaud9321.t1 ID=Gcaud9321.t1|Name=Gcaud9321.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:5823..6908- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTACGGGCATCAACCCTAAATCCCACTAGTCCGGCGAGGTGCGT
ATTGTCGGAGAGCAACGTGTTTGCTTTTATCTCCTATGTTTCTGCGGCCG
ATAAAGGATACTTCTACGATCCTCACCTGGCTTCCATTAAAGCTCGGCAT
CAGAACGAATTCCTAGAGGAAATTGATCTCTCTCCAGATTCGTTTTACAG
TTTGTCACCGTTAAGCAATCGGAATACCTACGTTCGCGTGCTTTTGAAGA
GAACGCTTATCACGACCTTCCTTAAGAACTTCAAAGACGACGAAGTGCAA
ATTATTTCTCTTGGGTCCGGGTTGGACACGTTCGCATTTCAACTCTTCAC
AGAGTTTCAATCTTCACTACCACCTATCCGATTTGTTGAACTTGATCTTC
TGTCTGTGGTGGAAGAAAAGCTGTGCTTAATTCAAGACATTCTCCTCAAT
AATGCCGTTTTTGACAATAGAGAGTTAGGACCCTCTCATTGTAGAGCTTG
GAAAGCACATCCAACTTCTCTTCACAAGTCATTTTACCATCTTCAGTCCT
GCGATCTTCGTGACCTCGAAGAACTTCGAAGCTCGTTATCGGAGAACCGG
ATAGATTTCTCAAGACCAACTCTCATACTTGCAGAAATTGTCCTGGTTTA
CCTGGAACCAAAACATTCCGATGGTCTCGTCAATTTCTTTGCAGAAAGGT
TTTCAGGGCCGTGCTGCTTCCTCGACTTCGACCACGTAAATACAGAAGAA
GAGTTTGGAACCAACATGAAGAAAGCCTTCACAGAGCTACATCTTCCACT
CTTAGGAATAGAAAAGTACCCTTCTATCGATTCGCATGTGAAGAGATTTA
CAAAACTAGGTTGGGATTATTGTACTGGTCTGACTATGTATGAAGGCCTT
CAGAAAAGACTAAGTAAGGAAAACATGCGAAAACTGGAAGACATAGAATA
TGTCGATGAGAGGGAACGATCACGACAAATCCTCTCACACTACGGTATTA
TTCATGCTGCGAAAGGATTCAAAGATGCAAAGAGCTTTCTGGCATCCATG
GATTTGGAGGAGTGTAGAGATCAATCCCCGTATTAA
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protein sequence of Gcaud9321.t1

>Gcaud9321.t1 ID=Gcaud9321.t1|Name=Gcaud9321.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=362bp
MAVRASTLNPTSPARCVLSESNVFAFISYVSAADKGYFYDPHLASIKARH
QNEFLEEIDLSPDSFYSLSPLSNRNTYVRVLLKRTLITTFLKNFKDDEVQ
IISLGSGLDTFAFQLFTEFQSSLPPIRFVELDLLSVVEEKLCLIQDILLN
NAVFDNRELGPSHCRAWKAHPTSLHKSFYHLQSCDLRDLEELRSSLSENR
IDFSRPTLILAEIVLVYLEPKHSDGLVNFFAERFSGPCCFLDFDHVNTEE
EFGTNMKKAFTELHLPLLGIEKYPSIDSHVKRFTKLGWDYCTGLTMYEGL
QKRLSKENMRKLEDIEYVDERERSRQILSHYGIIHAAKGFKDAKSFLASM
DLEECRDQSPY*
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mRNA from alignment at NODE_1448_length_10592_cov_4.938196:5823..6908-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9321.t1 ID=Gcaud9321.t1|Name=Gcaud9321.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:5823..6908- (Gracilaria caudata M_176_S67 male)
ATGGCGGTACGGGCATCAACCCTAAATCCCACTAGTCCGGCGAGGTGCGT
ATTGTCGGAGAGCAACGTGTTTGCTTTTATCTCCTATGTTTCTGCGGCCG
ATAAAGGATACTTCTACGATCCTCACCTGGCTTCCATTAAAGCTCGGCAT
CAGAACGAATTCCTAGAGGAAATTGATCTCTCTCCAGATTCGTTTTACAG
TTTGTCACCGTTAAGCAATCGGAATACCTACGTTCGCGTGCTTTTGAAGA
GAACGCTTATCACGACCTTCCTTAAGAACTTCAAAGACGACGAAGTGCAA
ATTATTTCTCTTGGGTCCGGGTTGGACACGTTCGCATTTCAACTCTTCAC
AGAGTTTCAATCTTCACTACCACCTATCCGATTTGTTGAACTTGATCTTC
TGTCTGTGGTGGAAGAAAAGCTGTGCTTAATTCAAGACATTCTCCTCAAT
AATGCCGTTTTTGACAATAGAGAGTTAGGACCCTCTCATTGTAGAGCTTG
GAAAGCACATCCAACTTCTCTTCACAAGTCATTTTACCATCTTCAGTCCT
GCGATCTTCGTGACCTCGAAGAACTTCGAAGCTCGTTATCGGAGAACCGG
ATAGATTTCTCAAGACCAACTCTCATACTTGCAGAAATTGTCCTGGTTTA
CCTGGAACCAAAACATTCCGATGGTCTCGTCAATTTCTTTGCAGAAAGGT
TTTCAGGGCCGTGCTGCTTCCTCGACTTCGACCACGTAAATACAGAAGAA
GAGTTTGGAACCAACATGAAGAAAGCCTTCACAGAGCTACATCTTCCACT
CTTAGGAATAGAAAAGTACCCTTCTATCGATTCGCATGTGAAGAGATTTA
CAAAACTAGGTTGGGATTATTGTACTGGTCTGACTATGTATGAAGGCCTT
CAGAAAAGACTAAGTAAGGAAAACATGCGAAAACTGGAAGACATAGAATA
TGTCGATGAGAGGGAACGATCACGACAAATCCTCTCACACTACGGTATTA
TTCATGCTGCGAAAGGATTCAAAGATGCAAAGAGCTTTCTGGCATCCATG
GATTTGGAGGAGTGTAGAGATCAATCCCCGTATTAA
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Coding sequence (CDS) from alignment at NODE_1448_length_10592_cov_4.938196:5823..6908-

>Gcaud9321.t1 ID=Gcaud9321.t1|Name=Gcaud9321.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1086bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:5823..6908- (Gracilaria caudata M_176_S67 male)
ATGGCGGTACGGGCATCAACCCTAAATCCCACTAGTCCGGCGAGGTGCGT
ATTGTCGGAGAGCAACGTGTTTGCTTTTATCTCCTATGTTTCTGCGGCCG
ATAAAGGATACTTCTACGATCCTCACCTGGCTTCCATTAAAGCTCGGCAT
CAGAACGAATTCCTAGAGGAAATTGATCTCTCTCCAGATTCGTTTTACAG
TTTGTCACCGTTAAGCAATCGGAATACCTACGTTCGCGTGCTTTTGAAGA
GAACGCTTATCACGACCTTCCTTAAGAACTTCAAAGACGACGAAGTGCAA
ATTATTTCTCTTGGGTCCGGGTTGGACACGTTCGCATTTCAACTCTTCAC
AGAGTTTCAATCTTCACTACCACCTATCCGATTTGTTGAACTTGATCTTC
TGTCTGTGGTGGAAGAAAAGCTGTGCTTAATTCAAGACATTCTCCTCAAT
AATGCCGTTTTTGACAATAGAGAGTTAGGACCCTCTCATTGTAGAGCTTG
GAAAGCACATCCAACTTCTCTTCACAAGTCATTTTACCATCTTCAGTCCT
GCGATCTTCGTGACCTCGAAGAACTTCGAAGCTCGTTATCGGAGAACCGG
ATAGATTTCTCAAGACCAACTCTCATACTTGCAGAAATTGTCCTGGTTTA
CCTGGAACCAAAACATTCCGATGGTCTCGTCAATTTCTTTGCAGAAAGGT
TTTCAGGGCCGTGCTGCTTCCTCGACTTCGACCACGTAAATACAGAAGAA
GAGTTTGGAACCAACATGAAGAAAGCCTTCACAGAGCTACATCTTCCACT
CTTAGGAATAGAAAAGTACCCTTCTATCGATTCGCATGTGAAGAGATTTA
CAAAACTAGGTTGGGATTATTGTACTGGTCTGACTATGTATGAAGGCCTT
CAGAAAAGACTAAGTAAGGAAAACATGCGAAAACTGGAAGACATAGAATA
TGTCGATGAGAGGGAACGATCACGACAAATCCTCTCACACTACGGTATTA
TTCATGCTGCGAAAGGATTCAAAGATGCAAAGAGCTTTCTGGCATCCATG
GATTTGGAGGAGTGTAGAGATCAATCCCCGTATTAA
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