Gcaud931.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud931.t1
Unique NameGcaud931.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_10724_length_529_cov_2.376712contigNODE_10724_length_529_cov_2.376712:2..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud931Gcaud931Gracilaria caudata M_176_S67 malegeneNODE_10724_length_529_cov_2.376712 2..529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud931.t1.CDS1Gcaud931.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_10724_length_529_cov_2.376712 2..529 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud931.t1.exon1Gcaud931.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_10724_length_529_cov_2.376712 2..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud931.t1Gcaud931.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_10724_length_529_cov_2.376712 2..529 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud931.t1 ID=Gcaud931.t1|Name=Gcaud931.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=177bp
XHVDESYPANQPGTSNFADESDFQVYAPRPGQVSSAFAEPDASHLEDVIE
DPSECEGLNPIQKDKTKELIERSSAFDQPDDGRLKSATKAPSAFGGFNSV
QKNEAKELREISAQKVKDCTTGEDNIDEKIVVRGEFLDEQPHVVPREPEG
QLGESEERSSDNAIDGGPWGEWGDLGX
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spliced messenger RNA

>Gcaud931.t1 ID=Gcaud931.t1|Name=Gcaud931.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp|location=Sequence derived from alignment at NODE_10724_length_529_cov_2.376712:2..529+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TCATGTAGATGAGTCTTATCCGGCCAACCAGCCCGGAACATCGAATTTTG
CAGATGAATCTGACTTTCAAGTGTATGCCCCCAGACCCGGTCAGGTATCC
TCTGCCTTTGCTGAACCTGATGCCAGTCACTTGGAAGATGTGATTGAAGA
CCCATCGGAATGTGAAGGGTTAAATCCTATCCAGAAGGACAAAACAAAGG
AACTGATAGAGAGATCATCTGCCTTTGATCAGCCTGATGATGGGCGCTTG
AAAAGTGCTACGAAAGCCCCATCCGCATTTGGAGGATTCAATTCTGTTCA
GAAAAACGAAGCAAAGGAACTGAGAGAGATATCGGCTCAGAAAGTTAAGG
ACTGTACCACCGGAGAGGATAATATTGATGAAAAGATTGTTGTACGGGGC
GAATTTCTTGATGAGCAACCCCATGTAGTTCCTCGAGAACCTGAGGGACA
GCTAGGCGAGTCCGAAGAGCGCAGCAGCGATAACGCGATTGATGGCGGGC
CCTGGGGAGAGTGGGGGGATCTTGGAAA
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protein sequence of Gcaud931.t1

>Gcaud931.t1 ID=Gcaud931.t1|Name=Gcaud931.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
XHVDESYPANQPGTSNFADESDFQVYAPRPGQVSSAFAEPDASHLEDVIE
DPSECEGLNPIQKDKTKELIERSSAFDQPDDGRLKSATKAPSAFGGFNSV
QKNEAKELREISAQKVKDCTTGEDNIDEKIVVRGEFLDEQPHVVPREPEG
QLGESEERSSDNAIDGGPWGEWGDLGX
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mRNA from alignment at NODE_10724_length_529_cov_2.376712:2..529+

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud931.t1 ID=Gcaud931.t1|Name=Gcaud931.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp|location=Sequence derived from alignment at NODE_10724_length_529_cov_2.376712:2..529+ (Gracilaria caudata M_176_S67 male)
TCATGTAGATGAGTCTTATCCGGCCAACCAGCCCGGAACATCGAATTTTG
CAGATGAATCTGACTTTCAAGTGTATGCCCCCAGACCCGGTCAGGTATCC
TCTGCCTTTGCTGAACCTGATGCCAGTCACTTGGAAGATGTGATTGAAGA
CCCATCGGAATGTGAAGGGTTAAATCCTATCCAGAAGGACAAAACAAAGG
AACTGATAGAGAGATCATCTGCCTTTGATCAGCCTGATGATGGGCGCTTG
AAAAGTGCTACGAAAGCCCCATCCGCATTTGGAGGATTCAATTCTGTTCA
GAAAAACGAAGCAAAGGAACTGAGAGAGATATCGGCTCAGAAAGTTAAGG
ACTGTACCACCGGAGAGGATAATATTGATGAAAAGATTGTTGTACGGGGC
GAATTTCTTGATGAGCAACCCCATGTAGTTCCTCGAGAACCTGAGGGACA
GCTAGGCGAGTCCGAAGAGCGCAGCAGCGATAACGCGATTGATGGCGGGC
CCTGGGGAGAGTGGGGGGATCTTGGAAA
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Coding sequence (CDS) from alignment at NODE_10724_length_529_cov_2.376712:2..529+

>Gcaud931.t1 ID=Gcaud931.t1|Name=Gcaud931.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=528bp|location=Sequence derived from alignment at NODE_10724_length_529_cov_2.376712:2..529+ (Gracilaria caudata M_176_S67 male)
TCATGTAGATGAGTCTTATCCGGCCAACCAGCCCGGAACATCGAATTTTG
CAGATGAATCTGACTTTCAAGTGTATGCCCCCAGACCCGGTCAGGTATCC
TCTGCCTTTGCTGAACCTGATGCCAGTCACTTGGAAGATGTGATTGAAGA
CCCATCGGAATGTGAAGGGTTAAATCCTATCCAGAAGGACAAAACAAAGG
AACTGATAGAGAGATCATCTGCCTTTGATCAGCCTGATGATGGGCGCTTG
AAAAGTGCTACGAAAGCCCCATCCGCATTTGGAGGATTCAATTCTGTTCA
GAAAAACGAAGCAAAGGAACTGAGAGAGATATCGGCTCAGAAAGTTAAGG
ACTGTACCACCGGAGAGGATAATATTGATGAAAAGATTGTTGTACGGGGC
GAATTTCTTGATGAGCAACCCCATGTAGTTCCTCGAGAACCTGAGGGACA
GCTAGGCGAGTCCGAAGAGCGCAGCAGCGATAACGCGATTGATGGCGGGC
CCTGGGGAGAGTGGGGGGATCTTGGAAA
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