Gcaud9306.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9306.t1
Unique NameGcaud9306.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length39
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5354_length_1629_cov_4.667750contigNODE_5354_length_1629_cov_4.667750:348..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9306Gcaud9306Gracilaria caudata M_176_S67 malegeneNODE_5354_length_1629_cov_4.667750 348..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9306.t1Gcaud9306.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5354_length_1629_cov_4.667750 348..592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9306.t1.CDS1Gcaud9306.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5354_length_1629_cov_4.667750 348..385 -
Gcaud9306.t1.CDS2Gcaud9306.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_5354_length_1629_cov_4.667750 515..592 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9306.t1.exon1Gcaud9306.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5354_length_1629_cov_4.667750 348..385 -
Gcaud9306.t1.exon2Gcaud9306.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_5354_length_1629_cov_4.667750 515..592 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9306.t1.intron1Gcaud9306.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_5354_length_1629_cov_4.667750 386..514 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9306.t1.start1Gcaud9306.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5354_length_1629_cov_4.667750 590..592 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9306.t1 ID=Gcaud9306.t1|Name=Gcaud9306.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=39bp
MATKLFRSEIAKPISLYQDRRFQGGHKRREAALKQSTTL
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spliced messenger RNA

>Gcaud9306.t1 ID=Gcaud9306.t1|Name=Gcaud9306.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=116bp|location=Sequence derived from alignment at NODE_5354_length_1629_cov_4.667750:348..592- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACCAAGCTTTTCAGATCCGAAATCGCAAAGCCGATCAGTCTTTA
TCAGGATAGACGCTTTCAAGGTGGGCATAAACGACGAGAAGCGGCTCTGA
AGCAAAGCACGACCCT
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protein sequence of Gcaud9306.t1

>Gcaud9306.t1 ID=Gcaud9306.t1|Name=Gcaud9306.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=39bp
MATKLFRSEIAKPISLYQDRRFQGGHKRREAALKQSTTL
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mRNA from alignment at NODE_5354_length_1629_cov_4.667750:348..592-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9306.t1 ID=Gcaud9306.t1|Name=Gcaud9306.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=245bp|location=Sequence derived from alignment at NODE_5354_length_1629_cov_4.667750:348..592- (Gracilaria caudata M_176_S67 male)
ATGGCAACCAAGCTTTTCAGATCCGAAATCGCAAAGCCGATCAGTCTTTA
TCAGGATAGACGCTTTCAAGGTGGGCATGTAAGTACCCTTCCTGAATTTC
TATTCATTCTGTCTTCAACGGCACAACAACTGACGGAATCTTCAAAACCC
ATATACAACCATGGGCCTTCTTCCATTCTTTTGCATTTACCCTTTTGATA
CGGCCAGAAACGACGAGAAGCGGCTCTGAAGCAAAGCACGACCCT
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Coding sequence (CDS) from alignment at NODE_5354_length_1629_cov_4.667750:348..592-

>Gcaud9306.t1 ID=Gcaud9306.t1|Name=Gcaud9306.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=116bp|location=Sequence derived from alignment at NODE_5354_length_1629_cov_4.667750:348..592- (Gracilaria caudata M_176_S67 male)
ATGGCAACCAAGCTTTTCAGATCCGAAATCGCAAAGCCGATCAGTCTTTA
TCAGGATAGACGCTTTCAAGGTGGGCATAAACGACGAGAAGCGGCTCTGA
AGCAAAGCACGACCCT
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