Gcaud925.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud925.t1
Unique Name	Gcaud925.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	446

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_621_length_20764_cov_4.325691	contig	NODE_621_length_20764_cov_4.325691:18998..20335 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD30651
PFAMs	GDA1_CD39
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002
KEGG ko	ko:K01510,ko:K01511
KEGG Reaction	R00086,R00122,R00155,R00159,R00328,R00335,R00514,R00569,R00719,R00961,R02092,R02095
KEGG Pathway	ko00230,ko00240,ko05169,map00230,map00240,map05169
Evalue	5.58e-57
EggNOG OGs	COG5371@1\|root,KOG1386@2759\|Eukaryota
EC	3.6.1.5,3.6.1.6
Description	8-oxo-dGTP phosphohydrolase activity
COG category	GO
BRITE	ko00000,ko00001,ko01000,ko04090

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud925	Gcaud925	Gracilaria caudata M_176_S67 male	gene	NODE_621_length_20764_cov_4.325691 18998..20335 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud925.t1.stop1	Gcaud925.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_621_length_20764_cov_4.325691 18998..19000 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud925.t1.CDS1	Gcaud925.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_621_length_20764_cov_4.325691 18998..20335 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud925.t1.exon1	Gcaud925.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_621_length_20764_cov_4.325691 18998..20335 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud925.t1.start1	Gcaud925.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_621_length_20764_cov_4.325691 20333..20335 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud925.t1	Gcaud925.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_621_length_20764_cov_4.325691 18998..20335 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_621_length_20764_cov_4.325691:18998..20335-
coding sequence from alignment at NODE_621_length_20764_cov_4.325691:18998..20335-

mRNA sequence

>Gcaud925.t1 ID=Gcaud925.t1|Name=Gcaud925.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=446bp
MATKFGKSYEPVGRPSVYPQGSTRGRLVKLVAAAILTIFAISALRSVYSP
SDYIYGLMIDAGSTGSRIHTFKFQKHPVTSKLDILGEDFHAIKPGLSAYK
ENANDAALSLEPLIQRAKSRVPISLQPETPIVLRATAGLRMAGEEVANSI
LHEVRKYLKSSGFRFDDDSWASILSGNEEGVYSWITVNYLLDREPFNTVG
TLEMGGGSSQVAYVPRDKALNSGSNCSTSEEDLDFKGEKLDLYTTSHLGF
GLQKGRATALKMFQEKGLLQDNPCLNAGGTVEVPVPFEEDQKLSMTGKGD
YTACRKLLDEQFMDPSMGQCSCDLCTYHGSAQPPPIPEYVAIAFYRGRTV
EIGLDTTLTVRDIRQKGEEICAMSVEEVTSKYPEVPQGVATDLCLDLAFI
ALHLEHGHGITEDSGTTLLVMEKINDFELGWCLGAMQQTMAKLGM*

spliced messenger RNA

>Gcaud925.t1 ID=Gcaud925.t1|Name=Gcaud925.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at NODE_621_length_20764_cov_4.325691:18998..20335- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCAAGTTCGGCAAGTCGTACGAGCCGGTCGGTCGACCCAGTGT
ATACCCACAAGGTTCAACACGCGGCCGTCTTGTAAAGCTTGTTGCGGCGG
CCATTCTTACCATCTTTGCGATTTCCGCGCTGCGTTCCGTGTATTCCCCG
TCCGACTATATCTACGGATTAATGATTGACGCTGGTTCAACTGGCTCTCG
AATCCACACTTTTAAGTTCCAGAAGCATCCAGTTACCTCAAAGTTGGATA
TCCTTGGAGAGGACTTTCATGCGATCAAACCAGGCTTGTCTGCATACAAG
GAGAATGCTAATGACGCTGCACTCTCGTTGGAGCCGCTCATTCAGCGAGC
CAAGTCTCGCGTTCCGATATCGCTGCAGCCTGAGACACCCATTGTTCTAC
GTGCGACTGCCGGTTTGAGAATGGCCGGTGAGGAGGTGGCCAATTCAATA
TTGCACGAAGTCCGCAAGTACCTGAAGTCTTCCGGCTTTCGATTCGACGA
CGACTCGTGGGCGTCCATTTTGTCTGGTAATGAAGAAGGAGTGTACTCCT
GGATCACAGTCAACTATCTTCTAGACCGCGAACCCTTCAACACTGTCGGT
ACACTCGAAATGGGTGGCGGCTCGTCTCAAGTCGCGTATGTCCCGAGGGA
CAAAGCTCTGAACTCTGGATCCAATTGCTCTACCTCTGAAGAAGATCTTG
ACTTCAAGGGAGAGAAGCTTGATTTGTACACTACTTCTCACCTGGGTTTT
GGTTTACAAAAAGGTCGTGCAACAGCACTGAAGATGTTTCAAGAGAAGGG
TTTGTTACAAGACAATCCTTGTCTGAACGCGGGCGGCACTGTGGAAGTGC
CAGTTCCGTTCGAAGAAGACCAGAAGCTTTCCATGACTGGCAAAGGCGAT
TACACGGCATGTCGCAAACTTCTTGACGAGCAGTTCATGGATCCATCTAT
GGGACAGTGTTCGTGCGATCTCTGCACATATCATGGCTCAGCTCAGCCGC
CACCAATTCCCGAATACGTTGCTATTGCTTTCTACCGCGGAAGAACAGTG
GAAATCGGGCTTGATACAACACTGACAGTGAGAGATATAAGACAAAAAGG
GGAGGAGATTTGCGCCATGAGTGTGGAAGAGGTCACATCTAAGTATCCAG
AGGTTCCGCAGGGCGTGGCTACTGATCTCTGTCTGGACCTCGCTTTCATA
GCTCTCCACCTTGAACACGGGCACGGCATTACGGAGGACAGCGGCACCAC
GCTTTTGGTCATGGAGAAGATCAACGATTTTGAACTAGGATGGTGCCTTG
GAGCCATGCAACAAACCATGGCCAAACTTGGAATGTGA

protein sequence of Gcaud925.t1

>Gcaud925.t1 ID=Gcaud925.t1|Name=Gcaud925.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=446bp
MATKFGKSYEPVGRPSVYPQGSTRGRLVKLVAAAILTIFAISALRSVYSP
SDYIYGLMIDAGSTGSRIHTFKFQKHPVTSKLDILGEDFHAIKPGLSAYK
ENANDAALSLEPLIQRAKSRVPISLQPETPIVLRATAGLRMAGEEVANSI
LHEVRKYLKSSGFRFDDDSWASILSGNEEGVYSWITVNYLLDREPFNTVG
TLEMGGGSSQVAYVPRDKALNSGSNCSTSEEDLDFKGEKLDLYTTSHLGF
GLQKGRATALKMFQEKGLLQDNPCLNAGGTVEVPVPFEEDQKLSMTGKGD
YTACRKLLDEQFMDPSMGQCSCDLCTYHGSAQPPPIPEYVAIAFYRGRTV
EIGLDTTLTVRDIRQKGEEICAMSVEEVTSKYPEVPQGVATDLCLDLAFI
ALHLEHGHGITEDSGTTLLVMEKINDFELGWCLGAMQQTMAKLGM*

mRNA from alignment at NODE_621_length_20764_cov_4.325691:18998..20335-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud925.t1 ID=Gcaud925.t1|Name=Gcaud925.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at NODE_621_length_20764_cov_4.325691:18998..20335- (Gracilaria caudata M_176_S67 male)
ATGGCTACCAAGTTCGGCAAGTCGTACGAGCCGGTCGGTCGACCCAGTGT
ATACCCACAAGGTTCAACACGCGGCCGTCTTGTAAAGCTTGTTGCGGCGG
CCATTCTTACCATCTTTGCGATTTCCGCGCTGCGTTCCGTGTATTCCCCG
TCCGACTATATCTACGGATTAATGATTGACGCTGGTTCAACTGGCTCTCG
AATCCACACTTTTAAGTTCCAGAAGCATCCAGTTACCTCAAAGTTGGATA
TCCTTGGAGAGGACTTTCATGCGATCAAACCAGGCTTGTCTGCATACAAG
GAGAATGCTAATGACGCTGCACTCTCGTTGGAGCCGCTCATTCAGCGAGC
CAAGTCTCGCGTTCCGATATCGCTGCAGCCTGAGACACCCATTGTTCTAC
GTGCGACTGCCGGTTTGAGAATGGCCGGTGAGGAGGTGGCCAATTCAATA
TTGCACGAAGTCCGCAAGTACCTGAAGTCTTCCGGCTTTCGATTCGACGA
CGACTCGTGGGCGTCCATTTTGTCTGGTAATGAAGAAGGAGTGTACTCCT
GGATCACAGTCAACTATCTTCTAGACCGCGAACCCTTCAACACTGTCGGT
ACACTCGAAATGGGTGGCGGCTCGTCTCAAGTCGCGTATGTCCCGAGGGA
CAAAGCTCTGAACTCTGGATCCAATTGCTCTACCTCTGAAGAAGATCTTG
ACTTCAAGGGAGAGAAGCTTGATTTGTACACTACTTCTCACCTGGGTTTT
GGTTTACAAAAAGGTCGTGCAACAGCACTGAAGATGTTTCAAGAGAAGGG
TTTGTTACAAGACAATCCTTGTCTGAACGCGGGCGGCACTGTGGAAGTGC
CAGTTCCGTTCGAAGAAGACCAGAAGCTTTCCATGACTGGCAAAGGCGAT
TACACGGCATGTCGCAAACTTCTTGACGAGCAGTTCATGGATCCATCTAT
GGGACAGTGTTCGTGCGATCTCTGCACATATCATGGCTCAGCTCAGCCGC
CACCAATTCCCGAATACGTTGCTATTGCTTTCTACCGCGGAAGAACAGTG
GAAATCGGGCTTGATACAACACTGACAGTGAGAGATATAAGACAAAAAGG
GGAGGAGATTTGCGCCATGAGTGTGGAAGAGGTCACATCTAAGTATCCAG
AGGTTCCGCAGGGCGTGGCTACTGATCTCTGTCTGGACCTCGCTTTCATA
GCTCTCCACCTTGAACACGGGCACGGCATTACGGAGGACAGCGGCACCAC
GCTTTTGGTCATGGAGAAGATCAACGATTTTGAACTAGGATGGTGCCTTG
GAGCCATGCAACAAACCATGGCCAAACTTGGAATGTGA

Coding sequence (CDS) from alignment at NODE_621_length_20764_cov_4.325691:18998..20335-

>Gcaud925.t1 ID=Gcaud925.t1|Name=Gcaud925.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1338bp|location=Sequence derived from alignment at NODE_621_length_20764_cov_4.325691:18998..20335- (Gracilaria caudata M_176_S67 male)
ATGGCTACCAAGTTCGGCAAGTCGTACGAGCCGGTCGGTCGACCCAGTGT
ATACCCACAAGGTTCAACACGCGGCCGTCTTGTAAAGCTTGTTGCGGCGG
CCATTCTTACCATCTTTGCGATTTCCGCGCTGCGTTCCGTGTATTCCCCG
TCCGACTATATCTACGGATTAATGATTGACGCTGGTTCAACTGGCTCTCG
AATCCACACTTTTAAGTTCCAGAAGCATCCAGTTACCTCAAAGTTGGATA
TCCTTGGAGAGGACTTTCATGCGATCAAACCAGGCTTGTCTGCATACAAG
GAGAATGCTAATGACGCTGCACTCTCGTTGGAGCCGCTCATTCAGCGAGC
CAAGTCTCGCGTTCCGATATCGCTGCAGCCTGAGACACCCATTGTTCTAC
GTGCGACTGCCGGTTTGAGAATGGCCGGTGAGGAGGTGGCCAATTCAATA
TTGCACGAAGTCCGCAAGTACCTGAAGTCTTCCGGCTTTCGATTCGACGA
CGACTCGTGGGCGTCCATTTTGTCTGGTAATGAAGAAGGAGTGTACTCCT
GGATCACAGTCAACTATCTTCTAGACCGCGAACCCTTCAACACTGTCGGT
ACACTCGAAATGGGTGGCGGCTCGTCTCAAGTCGCGTATGTCCCGAGGGA
CAAAGCTCTGAACTCTGGATCCAATTGCTCTACCTCTGAAGAAGATCTTG
ACTTCAAGGGAGAGAAGCTTGATTTGTACACTACTTCTCACCTGGGTTTT
GGTTTACAAAAAGGTCGTGCAACAGCACTGAAGATGTTTCAAGAGAAGGG
TTTGTTACAAGACAATCCTTGTCTGAACGCGGGCGGCACTGTGGAAGTGC
CAGTTCCGTTCGAAGAAGACCAGAAGCTTTCCATGACTGGCAAAGGCGAT
TACACGGCATGTCGCAAACTTCTTGACGAGCAGTTCATGGATCCATCTAT
GGGACAGTGTTCGTGCGATCTCTGCACATATCATGGCTCAGCTCAGCCGC
CACCAATTCCCGAATACGTTGCTATTGCTTTCTACCGCGGAAGAACAGTG
GAAATCGGGCTTGATACAACACTGACAGTGAGAGATATAAGACAAAAAGG
GGAGGAGATTTGCGCCATGAGTGTGGAAGAGGTCACATCTAAGTATCCAG
AGGTTCCGCAGGGCGTGGCTACTGATCTCTGTCTGGACCTCGCTTTCATA
GCTCTCCACCTTGAACACGGGCACGGCATTACGGAGGACAGCGGCACCAC
GCTTTTGGTCATGGAGAAGATCAACGATTTTGAACTAGGATGGTGCCTTG
GAGCCATGCAACAAACCATGGCCAAACTTGGAATGTGA