Gcaud9235.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9235.t1
Unique NameGcaud9235.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2450_length_5635_cov_4.103896contigNODE_2450_length_5635_cov_4.103896:2188..3031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM2G321053_P01
Max annot lvl35493|Streptophyta
Evalue1.87e-15
EggNOG OGsCOG0624@1|root,KOG2275@2759|Eukaryota,37Q0X@33090|Viridiplantae,3GEX3@35493|Streptophyta,3KSFJ@4447|Liliopsida,3IC2R@38820|Poales
Descriptionaminoacylase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9235Gcaud9235Gracilaria caudata M_176_S67 malegeneNODE_2450_length_5635_cov_4.103896 2188..3031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9235.t1Gcaud9235.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2450_length_5635_cov_4.103896 2188..3031 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9235.t1.stop1Gcaud9235.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2450_length_5635_cov_4.103896 2188..2190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9235.t1.CDS1Gcaud9235.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2450_length_5635_cov_4.103896 2188..2196 -
Gcaud9235.t1.CDS2Gcaud9235.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2450_length_5635_cov_4.103896 2291..3031 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9235.t1.exon1Gcaud9235.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2450_length_5635_cov_4.103896 2188..2196 -
Gcaud9235.t1.exon2Gcaud9235.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2450_length_5635_cov_4.103896 2291..3031 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9235.t1.intron1Gcaud9235.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2450_length_5635_cov_4.103896 2197..2290 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9235.t1.start1Gcaud9235.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2450_length_5635_cov_4.103896 3029..3031 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9235.t1 ID=Gcaud9235.t1|Name=Gcaud9235.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=250bp
MQQSSTQTSGSKASQEAQRPSPSPLRFFGFDDELLKSATDGEWFGFEATF
SSDGTLLPVPDRYVPDEFRDWGVAPNGFDVVSSSQITESSLYLKRTRALP
SVGCEADAVVPEVSVLKLEGSGNGGFRDGCVSCGSLQLGKSPLLIVLVNG
KQRVQLSFRISEKIGDVTVFNESWGSEFCDGQVLPGCGGGDRFAEGPKLD
IATLFGSWEYESEEADFSDDCSIRQTTGVLIRKTNEGELLALPKGLSAI*
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spliced messenger RNA

>Gcaud9235.t1 ID=Gcaud9235.t1|Name=Gcaud9235.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=750bp|location=Sequence derived from alignment at NODE_2450_length_5635_cov_4.103896:2188..3031- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACAGAGCAGCACACAAACTTCGGGCTCAAAAGCTTCCCAAGAAGC
ACAGCGACCGTCTCCATCTCCGCTTCGTTTTTTCGGCTTCGATGATGAAC
TCCTAAAATCAGCCACGGACGGGGAGTGGTTTGGGTTCGAAGCTACGTTC
AGCTCAGACGGTACTTTGCTTCCAGTTCCGGATCGTTATGTTCCTGACGA
GTTTCGGGACTGGGGTGTTGCCCCCAATGGATTCGATGTGGTCTCCAGCT
CTCAAATCACTGAAAGCTCGCTTTATTTGAAACGCACAAGAGCTCTACCA
AGCGTCGGCTGTGAGGCAGATGCAGTTGTACCAGAGGTTTCAGTTCTCAA
ATTGGAAGGGTCAGGAAACGGAGGGTTCCGAGATGGGTGTGTAAGTTGCG
GGTCATTGCAACTTGGCAAGTCCCCTCTGCTCATCGTTCTTGTTAACGGG
AAGCAGCGAGTGCAGCTAAGTTTCCGTATCAGTGAGAAAATTGGAGACGT
AACCGTTTTCAACGAAAGCTGGGGGTCTGAGTTCTGTGACGGGCAGGTTC
TACCGGGGTGCGGCGGTGGAGATCGGTTCGCTGAAGGACCTAAGTTGGAT
ATTGCGACTTTGTTTGGATCGTGGGAGTACGAATCAGAGGAAGCAGACTT
TTCGGACGATTGTAGTATTCGACAAACAACTGGAGTCCTGATTAGGAAAA
CGAATGAAGGCGAACTGTTGGCGCTTCCCAAAGGACTATCGGCGATTTGA
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protein sequence of Gcaud9235.t1

>Gcaud9235.t1 ID=Gcaud9235.t1|Name=Gcaud9235.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=250bp
MQQSSTQTSGSKASQEAQRPSPSPLRFFGFDDELLKSATDGEWFGFEATF
SSDGTLLPVPDRYVPDEFRDWGVAPNGFDVVSSSQITESSLYLKRTRALP
SVGCEADAVVPEVSVLKLEGSGNGGFRDGCVSCGSLQLGKSPLLIVLVNG
KQRVQLSFRISEKIGDVTVFNESWGSEFCDGQVLPGCGGGDRFAEGPKLD
IATLFGSWEYESEEADFSDDCSIRQTTGVLIRKTNEGELLALPKGLSAI*
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mRNA from alignment at NODE_2450_length_5635_cov_4.103896:2188..3031-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9235.t1 ID=Gcaud9235.t1|Name=Gcaud9235.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=844bp|location=Sequence derived from alignment at NODE_2450_length_5635_cov_4.103896:2188..3031- (Gracilaria caudata M_176_S67 male)
ATGCAACAGAGCAGCACACAAACTTCGGGCTCAAAAGCTTCCCAAGAAGC
ACAGCGACCGTCTCCATCTCCGCTTCGTTTTTTCGGCTTCGATGATGAAC
TCCTAAAATCAGCCACGGACGGGGAGTGGTTTGGGTTCGAAGCTACGTTC
AGCTCAGACGGTACTTTGCTTCCAGTTCCGGATCGTTATGTTCCTGACGA
GTTTCGGGACTGGGGTGTTGCCCCCAATGGATTCGATGTGGTCTCCAGCT
CTCAAATCACTGAAAGCTCGCTTTATTTGAAACGCACAAGAGCTCTACCA
AGCGTCGGCTGTGAGGCAGATGCAGTTGTACCAGAGGTTTCAGTTCTCAA
ATTGGAAGGGTCAGGAAACGGAGGGTTCCGAGATGGGTGTGTAAGTTGCG
GGTCATTGCAACTTGGCAAGTCCCCTCTGCTCATCGTTCTTGTTAACGGG
AAGCAGCGAGTGCAGCTAAGTTTCCGTATCAGTGAGAAAATTGGAGACGT
AACCGTTTTCAACGAAAGCTGGGGGTCTGAGTTCTGTGACGGGCAGGTTC
TACCGGGGTGCGGCGGTGGAGATCGGTTCGCTGAAGGACCTAAGTTGGAT
ATTGCGACTTTGTTTGGATCGTGGGAGTACGAATCAGAGGAAGCAGACTT
TTCGGACGATTGTAGTATTCGACAAACAACTGGAGTCCTGATTAGGAAAA
CGAATGAAGGCGAACTGTTGGCGCTTCCCAAAGGACTATCGGTACGTTTA
TTGAGAGAGGGAAACGCAGTGCTTGTCGAAGCCGGATGGCTCTGTGATGA
TACACGCATCGTAATCGAGAGACTTTATGAACAAGGCGATTTGA
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Coding sequence (CDS) from alignment at NODE_2450_length_5635_cov_4.103896:2188..3031-

>Gcaud9235.t1 ID=Gcaud9235.t1|Name=Gcaud9235.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=750bp|location=Sequence derived from alignment at NODE_2450_length_5635_cov_4.103896:2188..3031- (Gracilaria caudata M_176_S67 male)
ATGCAACAGAGCAGCACACAAACTTCGGGCTCAAAAGCTTCCCAAGAAGC
ACAGCGACCGTCTCCATCTCCGCTTCGTTTTTTCGGCTTCGATGATGAAC
TCCTAAAATCAGCCACGGACGGGGAGTGGTTTGGGTTCGAAGCTACGTTC
AGCTCAGACGGTACTTTGCTTCCAGTTCCGGATCGTTATGTTCCTGACGA
GTTTCGGGACTGGGGTGTTGCCCCCAATGGATTCGATGTGGTCTCCAGCT
CTCAAATCACTGAAAGCTCGCTTTATTTGAAACGCACAAGAGCTCTACCA
AGCGTCGGCTGTGAGGCAGATGCAGTTGTACCAGAGGTTTCAGTTCTCAA
ATTGGAAGGGTCAGGAAACGGAGGGTTCCGAGATGGGTGTGTAAGTTGCG
GGTCATTGCAACTTGGCAAGTCCCCTCTGCTCATCGTTCTTGTTAACGGG
AAGCAGCGAGTGCAGCTAAGTTTCCGTATCAGTGAGAAAATTGGAGACGT
AACCGTTTTCAACGAAAGCTGGGGGTCTGAGTTCTGTGACGGGCAGGTTC
TACCGGGGTGCGGCGGTGGAGATCGGTTCGCTGAAGGACCTAAGTTGGAT
ATTGCGACTTTGTTTGGATCGTGGGAGTACGAATCAGAGGAAGCAGACTT
TTCGGACGATTGTAGTATTCGACAAACAACTGGAGTCCTGATTAGGAAAA
CGAATGAAGGCGAACTGTTGGCGCTTCCCAAAGGACTATCGGCGATTTGA
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