Gcaud9223.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9223.t1
Unique Name	Gcaud9223.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	585

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_56_length_62400_cov_4.320371	contig	NODE_56_length_62400_cov_4.320371:34127..35993 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005650990.1
PFAMs	EMP70
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K17087
Evalue	2.33e-164
EggNOG OGs	KOG1278@1\|root,KOG1277@2759\|Eukaryota,37JU6@33090\|Viridiplantae,34JJZ@3041\|Chlorophyta
Description	Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family
COG category	U
BRITE	ko00000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9223	Gcaud9223	Gracilaria caudata M_176_S67 male	gene	NODE_56_length_62400_cov_4.320371 34127..35993 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9223.t1	Gcaud9223.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_56_length_62400_cov_4.320371 34127..35993 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9223.t1.start1	Gcaud9223.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_56_length_62400_cov_4.320371 34127..34129 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9223.t1.CDS1	Gcaud9223.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_56_length_62400_cov_4.320371 34127..34228 +
Gcaud9223.t1.CDS2	Gcaud9223.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_56_length_62400_cov_4.320371 34341..35993 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9223.t1.exon1	Gcaud9223.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_56_length_62400_cov_4.320371 34127..34228 +
Gcaud9223.t1.exon2	Gcaud9223.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_56_length_62400_cov_4.320371 34341..35993 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9223.t1.intron1	Gcaud9223.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_56_length_62400_cov_4.320371 34229..34340 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9223.t1.stop1	Gcaud9223.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_56_length_62400_cov_4.320371 35991..35993 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_56_length_62400_cov_4.320371:34127..35993+
coding sequence from alignment at NODE_56_length_62400_cov_4.320371:34127..35993+

mRNA sequence

>Gcaud9223.t1 ID=Gcaud9223.t1|Name=Gcaud9223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp
MCVRALCLALFALLAASLLDAAAATRGDSYQTGQSIDVWVNKIAPYTSPT
ESYEFYEKLPWCKPQQLHHRSLKLGETLAGDHLVRSLYNITFRESIHDQL
LCEQSLSPAQLNLFIHAIRKRFVYDMLIDNLPVKMFVGELSDDDAKPSIH
LYTHIEFLFSINGNHIIEASATPDKPVELSPGQHANIRFSYSVSWQETEF
PIDRRADKYRDPFHMRDREIHWFSIGNAVLIAVLLMGLLGSILMRVVRKD
FREYEALESEQESDDFGWKLLYADVFRFPPALTILCPFLGTGVQLLSLSC
LLLLFGALEVFHPLSRGAIYTSAVLLYAATAGIAGFASGYMYKQMGGHAW
VRNALVTVFVFCGPAACIWLYLNSIALIYKSTRALPVWSIASVAALWAMV
TIPLTILGAIIGKNQSRPFDSPGRTTKIPREIPKSPWFRRPPFLAVVCGL
MPFSSIYVELYFMFGALWGHKIFQVYEMLAIVFVILMLVTVITTTSAVYF
QLVAENYKWAWSSLAYGGSVGVYIFVYSAYYYYIRSPLEGFMQASFFFGY
MWLVSYAFFLMCGTVGFFSARKFIRFLYTSIKSD*

spliced messenger RNA

>Gcaud9223.t1 ID=Gcaud9223.t1|Name=Gcaud9223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_56_length_62400_cov_4.320371:34127..35993+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGTGCGAGCGCTTTGTTTGGCGTTGTTTGCGTTGCTCGCCGCGTC
GTTGCTTGACGCGGCCGCCGCGACGCGCGGCGATTCGTACCAAACGGGTC
AGAGCATTGACGTGTGGGTGAACAAAATCGCTCCGTACACTTCTCCGACG
GAGAGCTATGAGTTTTATGAAAAGTTGCCGTGGTGCAAACCGCAGCAGCT
GCATCATCGCTCGCTCAAGCTGGGCGAGACGCTTGCCGGCGACCATTTGG
TGCGCTCGTTGTACAACATAACCTTCCGAGAATCCATTCACGATCAACTT
CTGTGCGAACAGTCGCTCTCACCCGCTCAGCTCAACCTGTTCATCCATGC
CATTCGAAAGCGTTTTGTGTATGACATGCTCATCGACAACCTGCCCGTCA
AGATGTTTGTGGGCGAGCTGTCGGACGATGACGCCAAGCCGAGCATTCAT
CTGTACACGCATATCGAGTTCTTGTTTAGCATTAATGGCAATCATATCAT
TGAGGCTTCGGCCACGCCGGACAAGCCTGTGGAACTGTCGCCGGGGCAGC
ACGCAAACATCCGCTTCTCGTACAGCGTGTCGTGGCAGGAGACTGAATTC
CCCATCGACCGCCGCGCAGACAAGTACAGAGACCCGTTCCACATGCGCGA
CCGCGAAATCCATTGGTTCAGCATAGGCAACGCCGTTCTCATCGCCGTGT
TACTCATGGGTCTACTGGGCTCCATTCTCATGCGCGTCGTGCGCAAGGAC
TTTCGCGAGTACGAGGCGTTGGAATCGGAACAGGAGTCGGATGATTTCGG
CTGGAAGCTGTTGTATGCGGACGTGTTTCGCTTCCCGCCCGCGCTCACCA
TTCTGTGCCCGTTTCTGGGCACGGGCGTGCAGCTGCTCAGTCTGTCGTGC
CTGCTGCTGCTGTTTGGCGCGTTGGAGGTGTTTCACCCGCTCTCTCGCGG
CGCCATTTACACCAGCGCCGTTTTGCTGTACGCCGCTACGGCGGGCATTG
CCGGCTTTGCCAGTGGGTACATGTACAAGCAGATGGGCGGTCACGCCTGG
GTGCGCAATGCGTTGGTCACTGTGTTTGTGTTCTGCGGCCCGGCCGCCTG
TATTTGGCTGTATCTCAACTCCATTGCGTTGATCTACAAGTCCACGCGCG
CGCTGCCCGTATGGAGCATTGCGTCGGTTGCGGCGCTGTGGGCGATGGTC
ACCATTCCGTTGACCATTCTGGGCGCCATCATTGGCAAGAATCAGAGCCG
CCCGTTCGACTCGCCCGGCAGAACCACCAAGATTCCGCGCGAAATCCCGA
AGAGCCCGTGGTTCAGACGGCCGCCGTTCTTGGCGGTGGTGTGTGGGTTG
ATGCCGTTTAGCTCCATTTATGTGGAGCTGTACTTCATGTTTGGGGCGTT
GTGGGGACACAAGATCTTTCAGGTGTATGAGATGCTGGCCATTGTGTTTG
TGATTCTGATGCTGGTCACCGTCATCACCACCACCTCTGCTGTGTACTTT
CAGCTGGTGGCGGAAAACTACAAATGGGCTTGGTCCAGTCTCGCTTATGG
TGGCAGCGTTGGTGTATATATTTTCGTTTACAGCGCCTACTACTACTACA
TTCGCTCTCCGTTGGAAGGCTTCATGCAAGCCAGTTTCTTCTTTGGCTAC
ATGTGGCTTGTCAGCTATGCTTTTTTCCTCATGTGTGGCACCGTGGGATT
CTTCTCGGCAAGGAAATTTATTCGCTTCTTGTACACTTCGATCAAGAGCG
ACTAG

protein sequence of Gcaud9223.t1

>Gcaud9223.t1 ID=Gcaud9223.t1|Name=Gcaud9223.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=585bp
MCVRALCLALFALLAASLLDAAAATRGDSYQTGQSIDVWVNKIAPYTSPT
ESYEFYEKLPWCKPQQLHHRSLKLGETLAGDHLVRSLYNITFRESIHDQL
LCEQSLSPAQLNLFIHAIRKRFVYDMLIDNLPVKMFVGELSDDDAKPSIH
LYTHIEFLFSINGNHIIEASATPDKPVELSPGQHANIRFSYSVSWQETEF
PIDRRADKYRDPFHMRDREIHWFSIGNAVLIAVLLMGLLGSILMRVVRKD
FREYEALESEQESDDFGWKLLYADVFRFPPALTILCPFLGTGVQLLSLSC
LLLLFGALEVFHPLSRGAIYTSAVLLYAATAGIAGFASGYMYKQMGGHAW
VRNALVTVFVFCGPAACIWLYLNSIALIYKSTRALPVWSIASVAALWAMV
TIPLTILGAIIGKNQSRPFDSPGRTTKIPREIPKSPWFRRPPFLAVVCGL
MPFSSIYVELYFMFGALWGHKIFQVYEMLAIVFVILMLVTVITTTSAVYF
QLVAENYKWAWSSLAYGGSVGVYIFVYSAYYYYIRSPLEGFMQASFFFGY
MWLVSYAFFLMCGTVGFFSARKFIRFLYTSIKSD*

mRNA from alignment at NODE_56_length_62400_cov_4.320371:34127..35993+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9223.t1 ID=Gcaud9223.t1|Name=Gcaud9223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1867bp|location=Sequence derived from alignment at NODE_56_length_62400_cov_4.320371:34127..35993+ (Gracilaria caudata M_176_S67 male)
ATGTGTGTGCGAGCGCTTTGTTTGGCGTTGTTTGCGTTGCTCGCCGCGTC
GTTGCTTGACGCGGCCGCCGCGACGCGCGGCGATTCGTACCAAACGGGTC
AGGTACGTTGCGCTTTGTTCTTCTTGCGTGCGCGCAGTTTGTGGCCTCCC
GCTCACTTCAAGTGCCgtgtgtttgtgttcgtgtgcgtgtgcgtgtgcgt
gtgttgtgcgACAGAGCATTGACGTGTGGGTGAACAAAATCGCTCCGTAC
ACTTCTCCGACGGAGAGCTATGAGTTTTATGAAAAGTTGCCGTGGTGCAA
ACCGCAGCAGCTGCATCATCGCTCGCTCAAGCTGGGCGAGACGCTTGCCG
GCGACCATTTGGTGCGCTCGTTGTACAACATAACCTTCCGAGAATCCATT
CACGATCAACTTCTGTGCGAACAGTCGCTCTCACCCGCTCAGCTCAACCT
GTTCATCCATGCCATTCGAAAGCGTTTTGTGTATGACATGCTCATCGACA
ACCTGCCCGTCAAGATGTTTGTGGGCGAGCTGTCGGACGATGACGCCAAG
CCGAGCATTCATCTGTACACGCATATCGAGTTCTTGTTTAGCATTAATGG
CAATCATATCATTGAGGCTTCGGCCACGCCGGACAAGCCTGTGGAACTGT
CGCCGGGGCAGCACGCAAACATCCGCTTCTCGTACAGCGTGTCGTGGCAG
GAGACTGAATTCCCCATCGACCGCCGCGCAGACAAGTACAGAGACCCGTT
CCACATGCGCGACCGCGAAATCCATTGGTTCAGCATAGGCAACGCCGTTC
TCATCGCCGTGTTACTCATGGGTCTACTGGGCTCCATTCTCATGCGCGTC
GTGCGCAAGGACTTTCGCGAGTACGAGGCGTTGGAATCGGAACAGGAGTC
GGATGATTTCGGCTGGAAGCTGTTGTATGCGGACGTGTTTCGCTTCCCGC
CCGCGCTCACCATTCTGTGCCCGTTTCTGGGCACGGGCGTGCAGCTGCTC
AGTCTGTCGTGCCTGCTGCTGCTGTTTGGCGCGTTGGAGGTGTTTCACCC
GCTCTCTCGCGGCGCCATTTACACCAGCGCCGTTTTGCTGTACGCCGCTA
CGGCGGGCATTGCCGGCTTTGCCAGTGGGTACATGTACAAGCAGATGGGC
GGTCACGCCTGGGTGCGCAATGCGTTGGTCACTGTGTTTGTGTTCTGCGG
CCCGGCCGCCTGTATTTGGCTGTATCTCAACTCCATTGCGTTGATCTACA
AGTCCACGCGCGCGCTGCCCGTATGGAGCATTGCGTCGGTTGCGGCGCTG
TGGGCGATGGTCACCATTCCGTTGACCATTCTGGGCGCCATCATTGGCAA
GAATCAGAGCCGCCCGTTCGACTCGCCCGGCAGAACCACCAAGATTCCGC
GCGAAATCCCGAAGAGCCCGTGGTTCAGACGGCCGCCGTTCTTGGCGGTG
GTGTGTGGGTTGATGCCGTTTAGCTCCATTTATGTGGAGCTGTACTTCAT
GTTTGGGGCGTTGTGGGGACACAAGATCTTTCAGGTGTATGAGATGCTGG
CCATTGTGTTTGTGATTCTGATGCTGGTCACCGTCATCACCACCACCTCT
GCTGTGTACTTTCAGCTGGTGGCGGAAAACTACAAATGGGCTTGGTCCAG
TCTCGCTTATGGTGGCAGCGTTGGTGTATATATTTTCGTTTACAGCGCCT
ACTACTACTACATTCGCTCTCCGTTGGAAGGCTTCATGCAAGCCAGTTTC
TTCTTTGGCTACATGTGGCTTGTCAGCTATGCTTTTTTCCTCATGTGTGG
CACCGTGGGATTCTTCTCGGCAAGGAAATTTATTCGCTTCTTGTACACTT
CGATCAAGAGCGACTAG

Coding sequence (CDS) from alignment at NODE_56_length_62400_cov_4.320371:34127..35993+

>Gcaud9223.t1 ID=Gcaud9223.t1|Name=Gcaud9223.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1755bp|location=Sequence derived from alignment at NODE_56_length_62400_cov_4.320371:34127..35993+ (Gracilaria caudata M_176_S67 male)
ATGTGTGTGCGAGCGCTTTGTTTGGCGTTGTTTGCGTTGCTCGCCGCGTC
GTTGCTTGACGCGGCCGCCGCGACGCGCGGCGATTCGTACCAAACGGGTC
AGAGCATTGACGTGTGGGTGAACAAAATCGCTCCGTACACTTCTCCGACG
GAGAGCTATGAGTTTTATGAAAAGTTGCCGTGGTGCAAACCGCAGCAGCT
GCATCATCGCTCGCTCAAGCTGGGCGAGACGCTTGCCGGCGACCATTTGG
TGCGCTCGTTGTACAACATAACCTTCCGAGAATCCATTCACGATCAACTT
CTGTGCGAACAGTCGCTCTCACCCGCTCAGCTCAACCTGTTCATCCATGC
CATTCGAAAGCGTTTTGTGTATGACATGCTCATCGACAACCTGCCCGTCA
AGATGTTTGTGGGCGAGCTGTCGGACGATGACGCCAAGCCGAGCATTCAT
CTGTACACGCATATCGAGTTCTTGTTTAGCATTAATGGCAATCATATCAT
TGAGGCTTCGGCCACGCCGGACAAGCCTGTGGAACTGTCGCCGGGGCAGC
ACGCAAACATCCGCTTCTCGTACAGCGTGTCGTGGCAGGAGACTGAATTC
CCCATCGACCGCCGCGCAGACAAGTACAGAGACCCGTTCCACATGCGCGA
CCGCGAAATCCATTGGTTCAGCATAGGCAACGCCGTTCTCATCGCCGTGT
TACTCATGGGTCTACTGGGCTCCATTCTCATGCGCGTCGTGCGCAAGGAC
TTTCGCGAGTACGAGGCGTTGGAATCGGAACAGGAGTCGGATGATTTCGG
CTGGAAGCTGTTGTATGCGGACGTGTTTCGCTTCCCGCCCGCGCTCACCA
TTCTGTGCCCGTTTCTGGGCACGGGCGTGCAGCTGCTCAGTCTGTCGTGC
CTGCTGCTGCTGTTTGGCGCGTTGGAGGTGTTTCACCCGCTCTCTCGCGG
CGCCATTTACACCAGCGCCGTTTTGCTGTACGCCGCTACGGCGGGCATTG
CCGGCTTTGCCAGTGGGTACATGTACAAGCAGATGGGCGGTCACGCCTGG
GTGCGCAATGCGTTGGTCACTGTGTTTGTGTTCTGCGGCCCGGCCGCCTG
TATTTGGCTGTATCTCAACTCCATTGCGTTGATCTACAAGTCCACGCGCG
CGCTGCCCGTATGGAGCATTGCGTCGGTTGCGGCGCTGTGGGCGATGGTC
ACCATTCCGTTGACCATTCTGGGCGCCATCATTGGCAAGAATCAGAGCCG
CCCGTTCGACTCGCCCGGCAGAACCACCAAGATTCCGCGCGAAATCCCGA
AGAGCCCGTGGTTCAGACGGCCGCCGTTCTTGGCGGTGGTGTGTGGGTTG
ATGCCGTTTAGCTCCATTTATGTGGAGCTGTACTTCATGTTTGGGGCGTT
GTGGGGACACAAGATCTTTCAGGTGTATGAGATGCTGGCCATTGTGTTTG
TGATTCTGATGCTGGTCACCGTCATCACCACCACCTCTGCTGTGTACTTT
CAGCTGGTGGCGGAAAACTACAAATGGGCTTGGTCCAGTCTCGCTTATGG
TGGCAGCGTTGGTGTATATATTTTCGTTTACAGCGCCTACTACTACTACA
TTCGCTCTCCGTTGGAAGGCTTCATGCAAGCCAGTTTCTTCTTTGGCTAC
ATGTGGCTTGTCAGCTATGCTTTTTTCCTCATGTGTGGCACCGTGGGATT
CTTCTCGGCAAGGAAATTTATTCGCTTCTTGTACACTTCGATCAAGAGCG
ACTAG