Gcaud9212.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9212.t1
Unique Name	Gcaud9212.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_551_length_22383_cov_4.305805	contig	NODE_551_length_22383_cov_4.305805:13016..14218 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2K1G5
Preferred name	MCA1
PFAMs	Peptidase_C14
Max annot lvl	4751\|Fungi
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006515,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009987,GO:0012501,GO:0016787,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue	5.07e-65
EggNOG OGs	KOG1546@1\|root,KOG1546@2759\|Eukaryota,38EI0@33154\|Opisthokonta,3NW3X@4751\|Fungi,1GV2T@112252\|Fungi incertae sedis
Description	Mortierella verticillata NRRL 6337
COG category	DO

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9212	Gcaud9212	Gracilaria caudata M_176_S67 male	gene	NODE_551_length_22383_cov_4.305805 13016..14218 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9212.t1.start1	Gcaud9212.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_551_length_22383_cov_4.305805 13016..13018 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9212.t1.CDS1	Gcaud9212.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_551_length_22383_cov_4.305805 13016..14218 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9212.t1.exon1	Gcaud9212.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_551_length_22383_cov_4.305805 13016..14218 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9212.t1.stop1	Gcaud9212.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_551_length_22383_cov_4.305805 14216..14218 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9212.t1	Gcaud9212.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_551_length_22383_cov_4.305805 13016..14218 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_551_length_22383_cov_4.305805:13016..14218+
coding sequence from alignment at NODE_551_length_22383_cov_4.305805:13016..14218+

mRNA sequence

>Gcaud9212.t1 ID=Gcaud9212.t1|Name=Gcaud9212.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=401bp
MAPPPQQPPRHAPYAGVSPYQYAPQAAPPPPPPQQTHQSYRPVQPSAPQP
PPAYADSRSYRPPQRASSSGGYAAPRYYANPHAPSLSTFRPSGRKRALLV
GINYVGTKDELRGCVRDVTFVHHLLKTKFRFHDRDFVVLTDVDSKIRNVR
KGRPDRRTILESLKWLVSSAGPGDSLWFSFSGHGSQVVDTSGDESDGYDE
TLLPVDYKVAGPIVDDQLYRIVRRVGNGARLTVLLDACHSGTGLDLPYQH
DVFGTGTGQKLSSGGRPMSLTSGIANLTGHLLNGNASGALQAGLSLMKGK
KKTKPQQGPDPNAGEVLLFAGCKDNQTAADTSKFAKGLTTGAMTYALIEA
IEHSTVGDWRNYNYRQLLQTMRQKLRENRMVQTPQFSTSHPFDVSSPFVL
*

spliced messenger RNA

>Gcaud9212.t1 ID=Gcaud9212.t1|Name=Gcaud9212.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_551_length_22383_cov_4.305805:13016..14218+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCCGCCGCAACAACCGCCGAGGCATGCTCCTTATGCAGGCGT
GTCGCCGTATCAGTACGCGCCGCAGGCTGCGCCTCCGCCACCGCCGCCGC
AACAAACCCATCAGTCGTACCGTCCCGTGCAACCGAGCGCGCCGCAGCCG
CCGCCGGCTTATGCGGACTCGCGTTCGTATCGCCCGCCGCAACGCGCTTC
GTCTTCGGGTGGTTATGCTGCGCCGCGCTACTATGCAAACCCGCATGCGC
CCTCGCTCAGTACGTTCCGTCCATCGGGACGTAAGCGCGCTTTGTTGGTG
GGAATTAACTATGTTGGCACGAAGGATGAGCTACGAGGTTGTGTCCGTGA
CGTCACTTTTGTGCATCATTTGCTTAAGACGAAGTTCCGCTTCCATGATA
GGGACTTTGTGGTGCTCACGGATGTGGACTCCAAGATTAGGAACGTGCGC
AAGGGACGACCGGATCGACGTACCATTCTGGAGTCGTTAAAGTGGCTGGT
CAGTAGCGCCGGACCGGGCGATTCGTTGTGGTTCTCGTTTTCGGGCCATG
GCTCGCAGGTTGTGGATACCAGCGGAGATGAGAGTGATGGCTACGATGAG
ACGCTTTTGCCGGTGGACTACAAGGTGGCTGGACCCATTGTGGATGATCA
GTTGTACAGGATTGTGCGCAGAGTGGGCAATGGTGCGCGTCTCACCGTGT
TGTTGGATGCATGTCACTCTGGTACAGGTCTCGATTTGCCGTATCAACAC
GACGTGTTCGGCACCGGAACCGGACAGAAGCTCAGTTCGGGCGGCAGACC
AATGAGTCTCACGTCTGGAATCGCTAACCTCACGGGACACCTTTTGAACG
GAAACGCGTCTGGCGCGCTGCAGGCCGGTCTCAGTCTGATGAAGGGAAAG
AAGAAGACCAAACCGCAACAGGGACCAGACCCTAATGCTGGCGAGGTCTT
GCTGTTTGCCGGATGTAAGGATAACCAAACCGCTGCCGATACTTCCAAGT
TTGCAAAGGGACTTACTACTGGCGCTATGACCTACGCTCTGATTGAGGCC
ATTGAGCATTCTACTGTTGGTGATTGGCGAAATTATAATTATCGACAGTT
ATTGCAGACTATGAGACAGAAACTTCGTGAGAACAGAATGGTGCAGACGC
CGCAGTTCTCTACTTCTCATCCATTTGACGTCTCTTCCCCGtttgtcttg
tag

protein sequence of Gcaud9212.t1

>Gcaud9212.t1 ID=Gcaud9212.t1|Name=Gcaud9212.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=401bp
MAPPPQQPPRHAPYAGVSPYQYAPQAAPPPPPPQQTHQSYRPVQPSAPQP
PPAYADSRSYRPPQRASSSGGYAAPRYYANPHAPSLSTFRPSGRKRALLV
GINYVGTKDELRGCVRDVTFVHHLLKTKFRFHDRDFVVLTDVDSKIRNVR
KGRPDRRTILESLKWLVSSAGPGDSLWFSFSGHGSQVVDTSGDESDGYDE
TLLPVDYKVAGPIVDDQLYRIVRRVGNGARLTVLLDACHSGTGLDLPYQH
DVFGTGTGQKLSSGGRPMSLTSGIANLTGHLLNGNASGALQAGLSLMKGK
KKTKPQQGPDPNAGEVLLFAGCKDNQTAADTSKFAKGLTTGAMTYALIEA
IEHSTVGDWRNYNYRQLLQTMRQKLRENRMVQTPQFSTSHPFDVSSPFVL
*

mRNA from alignment at NODE_551_length_22383_cov_4.305805:13016..14218+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9212.t1 ID=Gcaud9212.t1|Name=Gcaud9212.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_551_length_22383_cov_4.305805:13016..14218+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCGCCGCCGCAACAACCGCCGAGGCATGCTCCTTATGCAGGCGT
GTCGCCGTATCAGTACGCGCCGCAGGCTGCGCCTCCGCCACCGCCGCCGC
AACAAACCCATCAGTCGTACCGTCCCGTGCAACCGAGCGCGCCGCAGCCG
CCGCCGGCTTATGCGGACTCGCGTTCGTATCGCCCGCCGCAACGCGCTTC
GTCTTCGGGTGGTTATGCTGCGCCGCGCTACTATGCAAACCCGCATGCGC
CCTCGCTCAGTACGTTCCGTCCATCGGGACGTAAGCGCGCTTTGTTGGTG
GGAATTAACTATGTTGGCACGAAGGATGAGCTACGAGGTTGTGTCCGTGA
CGTCACTTTTGTGCATCATTTGCTTAAGACGAAGTTCCGCTTCCATGATA
GGGACTTTGTGGTGCTCACGGATGTGGACTCCAAGATTAGGAACGTGCGC
AAGGGACGACCGGATCGACGTACCATTCTGGAGTCGTTAAAGTGGCTGGT
CAGTAGCGCCGGACCGGGCGATTCGTTGTGGTTCTCGTTTTCGGGCCATG
GCTCGCAGGTTGTGGATACCAGCGGAGATGAGAGTGATGGCTACGATGAG
ACGCTTTTGCCGGTGGACTACAAGGTGGCTGGACCCATTGTGGATGATCA
GTTGTACAGGATTGTGCGCAGAGTGGGCAATGGTGCGCGTCTCACCGTGT
TGTTGGATGCATGTCACTCTGGTACAGGTCTCGATTTGCCGTATCAACAC
GACGTGTTCGGCACCGGAACCGGACAGAAGCTCAGTTCGGGCGGCAGACC
AATGAGTCTCACGTCTGGAATCGCTAACCTCACGGGACACCTTTTGAACG
GAAACGCGTCTGGCGCGCTGCAGGCCGGTCTCAGTCTGATGAAGGGAAAG
AAGAAGACCAAACCGCAACAGGGACCAGACCCTAATGCTGGCGAGGTCTT
GCTGTTTGCCGGATGTAAGGATAACCAAACCGCTGCCGATACTTCCAAGT
TTGCAAAGGGACTTACTACTGGCGCTATGACCTACGCTCTGATTGAGGCC
ATTGAGCATTCTACTGTTGGTGATTGGCGAAATTATAATTATCGACAGTT
ATTGCAGACTATGAGACAGAAACTTCGTGAGAACAGAATGGTGCAGACGC
CGCAGTTCTCTACTTCTCATCCATTTGACGTCTCTTCCCCGtttgtcttg
tag

Coding sequence (CDS) from alignment at NODE_551_length_22383_cov_4.305805:13016..14218+

>Gcaud9212.t1 ID=Gcaud9212.t1|Name=Gcaud9212.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1203bp|location=Sequence derived from alignment at NODE_551_length_22383_cov_4.305805:13016..14218+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCGCCGCCGCAACAACCGCCGAGGCATGCTCCTTATGCAGGCGT
GTCGCCGTATCAGTACGCGCCGCAGGCTGCGCCTCCGCCACCGCCGCCGC
AACAAACCCATCAGTCGTACCGTCCCGTGCAACCGAGCGCGCCGCAGCCG
CCGCCGGCTTATGCGGACTCGCGTTCGTATCGCCCGCCGCAACGCGCTTC
GTCTTCGGGTGGTTATGCTGCGCCGCGCTACTATGCAAACCCGCATGCGC
CCTCGCTCAGTACGTTCCGTCCATCGGGACGTAAGCGCGCTTTGTTGGTG
GGAATTAACTATGTTGGCACGAAGGATGAGCTACGAGGTTGTGTCCGTGA
CGTCACTTTTGTGCATCATTTGCTTAAGACGAAGTTCCGCTTCCATGATA
GGGACTTTGTGGTGCTCACGGATGTGGACTCCAAGATTAGGAACGTGCGC
AAGGGACGACCGGATCGACGTACCATTCTGGAGTCGTTAAAGTGGCTGGT
CAGTAGCGCCGGACCGGGCGATTCGTTGTGGTTCTCGTTTTCGGGCCATG
GCTCGCAGGTTGTGGATACCAGCGGAGATGAGAGTGATGGCTACGATGAG
ACGCTTTTGCCGGTGGACTACAAGGTGGCTGGACCCATTGTGGATGATCA
GTTGTACAGGATTGTGCGCAGAGTGGGCAATGGTGCGCGTCTCACCGTGT
TGTTGGATGCATGTCACTCTGGTACAGGTCTCGATTTGCCGTATCAACAC
GACGTGTTCGGCACCGGAACCGGACAGAAGCTCAGTTCGGGCGGCAGACC
AATGAGTCTCACGTCTGGAATCGCTAACCTCACGGGACACCTTTTGAACG
GAAACGCGTCTGGCGCGCTGCAGGCCGGTCTCAGTCTGATGAAGGGAAAG
AAGAAGACCAAACCGCAACAGGGACCAGACCCTAATGCTGGCGAGGTCTT
GCTGTTTGCCGGATGTAAGGATAACCAAACCGCTGCCGATACTTCCAAGT
TTGCAAAGGGACTTACTACTGGCGCTATGACCTACGCTCTGATTGAGGCC
ATTGAGCATTCTACTGTTGGTGATTGGCGAAATTATAATTATCGACAGTT
ATTGCAGACTATGAGACAGAAACTTCGTGAGAACAGAATGGTGCAGACGC
CGCAGTTCTCTACTTCTCATCCATTTGACGTCTCTTCCCCGtttgtcttg
tag