Gcaud9167.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9167.t1
Unique NameGcaud9167.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1421_length_10791_cov_3.905047contigNODE_1421_length_10791_cov_3.905047:7801..8204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T012390
Max annot lvl121069|Pythiales
Evalue0.000258
EggNOG OGs2BKX4@1|root,2S1JI@2759|Eukaryota,1ME71@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9167Gcaud9167Gracilaria caudata M_176_S67 malegeneNODE_1421_length_10791_cov_3.905047 7801..8204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9167.t1Gcaud9167.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1421_length_10791_cov_3.905047 7801..8204 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9167.t1.start1Gcaud9167.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1421_length_10791_cov_3.905047 7801..7803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9167.t1.CDS1Gcaud9167.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1421_length_10791_cov_3.905047 7801..7904 +
Gcaud9167.t1.CDS2Gcaud9167.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1421_length_10791_cov_3.905047 7997..8204 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9167.t1.exon1Gcaud9167.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1421_length_10791_cov_3.905047 7801..7904 +
Gcaud9167.t1.exon2Gcaud9167.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1421_length_10791_cov_3.905047 7997..8204 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9167.t1.intron1Gcaud9167.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1421_length_10791_cov_3.905047 7905..7996 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9167.t1.stop1Gcaud9167.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1421_length_10791_cov_3.905047 8202..8204 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9167.t1 ID=Gcaud9167.t1|Name=Gcaud9167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=104bp
MQARLRTGKILRPDVEDDVLRKPVSESKFRHPSPGSQQPPLVPQGPYENV
FNIEYHSRDVRRRHTREQINAAQAAATAGLPPTPGTPAHSKFLGMAGDFD
RQQ*
back to top

spliced messenger RNA

>Gcaud9167.t1 ID=Gcaud9167.t1|Name=Gcaud9167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=312bp|location=Sequence derived from alignment at NODE_1421_length_10791_cov_3.905047:7801..8204+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCGCGTCTCCGCACCGGCAAGATTCTGCGTCCAGACGTGGAGGA
CGACGTGTTGCGCAAGCCCGTGTCCGAGTCCAAGTTCCGTCATCCGTCGC
CGGGCTCGCAGCAGCCGCCGCTTGTGCCGCAGGGGCCGTACGAAAACGTG
TTCAACATCGAGTACCACAGCCGCGACGTGCGCCGTCGTCACACGCGCGA
GCAGATCAACGCCGCGCAGGCAGCCGCCACCGCCGGTCTACCGCCCACGC
CGGGCACGCCCGCGCACAGCAAGTTCCTCGGCATGGCCGGCGACTTTGAC
AGGCAGCAGTAA
back to top

protein sequence of Gcaud9167.t1

>Gcaud9167.t1 ID=Gcaud9167.t1|Name=Gcaud9167.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=104bp
MQARLRTGKILRPDVEDDVLRKPVSESKFRHPSPGSQQPPLVPQGPYENV
FNIEYHSRDVRRRHTREQINAAQAAATAGLPPTPGTPAHSKFLGMAGDFD
RQQ*
back to top

mRNA from alignment at NODE_1421_length_10791_cov_3.905047:7801..8204+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9167.t1 ID=Gcaud9167.t1|Name=Gcaud9167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=404bp|location=Sequence derived from alignment at NODE_1421_length_10791_cov_3.905047:7801..8204+ (Gracilaria caudata M_176_S67 male)
ATGCAGGCGCGTCTCCGCACCGGCAAGATTCTGCGTCCAGACGTGGAGGA
CGACGTGTTGCGCAAGCCCGTGTCCGAGTCCAAGTTCCGTCATCCGTCGC
CGGGGTAAGTTCTCGCGCTCCCTGTTTTTCGCTGCGCCCGCCGCCGTTTC
GAAGTGCGCGCGCGGTGTTTGCTGACATGTGCGCTCCCAAAAAAAGCTCG
CAGCAGCCGCCGCTTGTGCCGCAGGGGCCGTACGAAAACGTGTTCAACAT
CGAGTACCACAGCCGCGACGTGCGCCGTCGTCACACGCGCGAGCAGATCA
ACGCCGCGCAGGCAGCCGCCACCGCCGGTCTACCGCCCACGCCGGGCACG
CCCGCGCACAGCAAGTTCCTCGGCATGGCCGGCGACTTTGACAGGCAGCA
GTAA
back to top

Coding sequence (CDS) from alignment at NODE_1421_length_10791_cov_3.905047:7801..8204+

>Gcaud9167.t1 ID=Gcaud9167.t1|Name=Gcaud9167.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=312bp|location=Sequence derived from alignment at NODE_1421_length_10791_cov_3.905047:7801..8204+ (Gracilaria caudata M_176_S67 male)
ATGCAGGCGCGTCTCCGCACCGGCAAGATTCTGCGTCCAGACGTGGAGGA
CGACGTGTTGCGCAAGCCCGTGTCCGAGTCCAAGTTCCGTCATCCGTCGC
CGGGCTCGCAGCAGCCGCCGCTTGTGCCGCAGGGGCCGTACGAAAACGTG
TTCAACATCGAGTACCACAGCCGCGACGTGCGCCGTCGTCACACGCGCGA
GCAGATCAACGCCGCGCAGGCAGCCGCCACCGCCGGTCTACCGCCCACGC
CGGGCACGCCCGCGCACAGCAAGTTCCTCGGCATGGCCGGCGACTTTGAC
AGGCAGCAGTAA
back to top