Gcaud9159.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9159.t1
Unique Name	Gcaud9159.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	349

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1255_length_12111_cov_4.584942	contig	NODE_1255_length_12111_cov_4.584942:11000..12046 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr45605
PFAMs	2OG-FeII_Oxy,DIOX_N
Max annot lvl	2836\|Bacillariophyta
Evalue	2.02e-60
EggNOG OGs	COG3491@1\|root,KOG0143@2759\|Eukaryota,2XEMB@2836\|Bacillariophyta
Description	Belongs to the iron ascorbate-dependent oxidoreductase family
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9159	Gcaud9159	Gracilaria caudata M_176_S67 male	gene	NODE_1255_length_12111_cov_4.584942 11000..12046 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9159.t1.stop1	Gcaud9159.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1255_length_12111_cov_4.584942 11000..11002 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9159.t1.CDS1	Gcaud9159.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1255_length_12111_cov_4.584942 11000..12046 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9159.t1.exon1	Gcaud9159.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1255_length_12111_cov_4.584942 11000..12046 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9159.t1.start1	Gcaud9159.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1255_length_12111_cov_4.584942 12044..12046 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9159.t1	Gcaud9159.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1255_length_12111_cov_4.584942 11000..12046 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1255_length_12111_cov_4.584942:11000..12046-
coding sequence from alignment at NODE_1255_length_12111_cov_4.584942:11000..12046-

mRNA sequence

>Gcaud9159.t1 ID=Gcaud9159.t1|Name=Gcaud9159.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=349bp
MEAQPRGCEVPLVDFSPFCNVPLDAPPPHITREQRSVAAQIDAALRRHGV
LFLRNFGLPAAQLHAAFHMTQQLFALPLQHKLDSLKRYDATLSGGYIARG
MESYNHRRAFDLKEAYNITDPMRIKPDYSKYPRDFERVSTQFYHSMSNAA
SRLAIACALALDIPLDTFGRCVKERDLTTVRMMHYPPCHFVRGQSTGDDE
TSSIRLAEHRDFGFFTFLFVHSAGLQVKRERDACGAHAQSVWMDVPIPPQ
GCAVVMIGRLAARVTNDVWMAPMHRVVVSDGCACGKSRYAVAYFHEPDKR
SVIETHPRFCAEGDARGYEPISGGASTSALVEQSLVKKDAALNASDAE*

spliced messenger RNA

>Gcaud9159.t1 ID=Gcaud9159.t1|Name=Gcaud9159.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_1255_length_12111_cov_4.584942:11000..12046- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCGCAGCCGCGCGGCTGTGAAGTTCCGCTCGTCGACTTCTCGCC
GTTTTGCAACGTGCCGCTCGATGCGCCGCCGCCGCACATCACGCGCGAGC
AACGCAGCGTTGCGGCGCAAATCGACGCGGCGCTTCGACGCCACGGCGTG
TTGTTTCTGCGCAACTTCGGTCTTCCCGCCGCGCAGCTGCACGCCGCGTT
CCACATGACACAGCAGCTGTTCGCACTGCCGTTGCAACACAAGTTGGATT
CACTCAAGCGGTATGACGCCACACTCAGCGGTGGATACATTGCTCGCGGT
ATGGAGAGTTACAATCATCGACGCGCGTTCGATCTGAAGGAGGCGTACAA
CATCACCGACCCGATGCGTATCAAGCCCGATTACAGCAAGTATCCGCGCG
ACTTTGAACGCGTCAGCACGCAGTTCTACCACAGCATGAGCAACGCGGCG
TCGCGTCTCGCGATTGCGTGCGCGCTGGCGCTGGACATTCCGCTGGACAC
CTTTGGCCGCTGCGTGAAAGAGCGCGACTTGACGACGGTTCGCATGATGC
ACTACCCGCCGTGCCACTTTGTGCGCGGCCAAAGCACGGGTGACGACGAA
ACGTCGTCCATCCGTCTCGCCGAGCATCGCGACTTTGGCTTCTTCACGTT
CCTGTTCGTGCACAGCGCCGGTTTACAAGTGAAGCGTGAACGCGACGCGT
GCGGCGCACACGCGCAGAGCGTGTGGATGGACGTGCCGATACCGCCGCAG
GGCTGCGCGGTTGTGATGATTGGACGGCTTGCAGCGCGCGTGACGAATGA
TGTGTGGATGGCGCCGATGCATCGCGTGGTGGTGAGCGATGGGTGCGCGT
GCGGTAAGAGTCGGTACGCGGTGGCGTACTTTCACGAACCGGATAAACGG
AGCGTGATTGAGACGCACCCGCGCTTCTGTGCGGAGGGGGACGCGCGCGG
ATATGAGCCCATTTCGGGCGGCGCCAGTACGTCTGCGCTGGTTGAACAGA
GCTTGGTGAAGAAGGACGCCGCTTTGAACGCTTCGGACGCTGAGTGA

protein sequence of Gcaud9159.t1

>Gcaud9159.t1 ID=Gcaud9159.t1|Name=Gcaud9159.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=349bp
MEAQPRGCEVPLVDFSPFCNVPLDAPPPHITREQRSVAAQIDAALRRHGV
LFLRNFGLPAAQLHAAFHMTQQLFALPLQHKLDSLKRYDATLSGGYIARG
MESYNHRRAFDLKEAYNITDPMRIKPDYSKYPRDFERVSTQFYHSMSNAA
SRLAIACALALDIPLDTFGRCVKERDLTTVRMMHYPPCHFVRGQSTGDDE
TSSIRLAEHRDFGFFTFLFVHSAGLQVKRERDACGAHAQSVWMDVPIPPQ
GCAVVMIGRLAARVTNDVWMAPMHRVVVSDGCACGKSRYAVAYFHEPDKR
SVIETHPRFCAEGDARGYEPISGGASTSALVEQSLVKKDAALNASDAE*

mRNA from alignment at NODE_1255_length_12111_cov_4.584942:11000..12046-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9159.t1 ID=Gcaud9159.t1|Name=Gcaud9159.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_1255_length_12111_cov_4.584942:11000..12046- (Gracilaria caudata M_176_S67 male)
ATGGAGGCGCAGCCGCGCGGCTGTGAAGTTCCGCTCGTCGACTTCTCGCC
GTTTTGCAACGTGCCGCTCGATGCGCCGCCGCCGCACATCACGCGCGAGC
AACGCAGCGTTGCGGCGCAAATCGACGCGGCGCTTCGACGCCACGGCGTG
TTGTTTCTGCGCAACTTCGGTCTTCCCGCCGCGCAGCTGCACGCCGCGTT
CCACATGACACAGCAGCTGTTCGCACTGCCGTTGCAACACAAGTTGGATT
CACTCAAGCGGTATGACGCCACACTCAGCGGTGGATACATTGCTCGCGGT
ATGGAGAGTTACAATCATCGACGCGCGTTCGATCTGAAGGAGGCGTACAA
CATCACCGACCCGATGCGTATCAAGCCCGATTACAGCAAGTATCCGCGCG
ACTTTGAACGCGTCAGCACGCAGTTCTACCACAGCATGAGCAACGCGGCG
TCGCGTCTCGCGATTGCGTGCGCGCTGGCGCTGGACATTCCGCTGGACAC
CTTTGGCCGCTGCGTGAAAGAGCGCGACTTGACGACGGTTCGCATGATGC
ACTACCCGCCGTGCCACTTTGTGCGCGGCCAAAGCACGGGTGACGACGAA
ACGTCGTCCATCCGTCTCGCCGAGCATCGCGACTTTGGCTTCTTCACGTT
CCTGTTCGTGCACAGCGCCGGTTTACAAGTGAAGCGTGAACGCGACGCGT
GCGGCGCACACGCGCAGAGCGTGTGGATGGACGTGCCGATACCGCCGCAG
GGCTGCGCGGTTGTGATGATTGGACGGCTTGCAGCGCGCGTGACGAATGA
TGTGTGGATGGCGCCGATGCATCGCGTGGTGGTGAGCGATGGGTGCGCGT
GCGGTAAGAGTCGGTACGCGGTGGCGTACTTTCACGAACCGGATAAACGG
AGCGTGATTGAGACGCACCCGCGCTTCTGTGCGGAGGGGGACGCGCGCGG
ATATGAGCCCATTTCGGGCGGCGCCAGTACGTCTGCGCTGGTTGAACAGA
GCTTGGTGAAGAAGGACGCCGCTTTGAACGCTTCGGACGCTGAGTGA

Coding sequence (CDS) from alignment at NODE_1255_length_12111_cov_4.584942:11000..12046-

>Gcaud9159.t1 ID=Gcaud9159.t1|Name=Gcaud9159.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1047bp|location=Sequence derived from alignment at NODE_1255_length_12111_cov_4.584942:11000..12046- (Gracilaria caudata M_176_S67 male)
ATGGAGGCGCAGCCGCGCGGCTGTGAAGTTCCGCTCGTCGACTTCTCGCC
GTTTTGCAACGTGCCGCTCGATGCGCCGCCGCCGCACATCACGCGCGAGC
AACGCAGCGTTGCGGCGCAAATCGACGCGGCGCTTCGACGCCACGGCGTG
TTGTTTCTGCGCAACTTCGGTCTTCCCGCCGCGCAGCTGCACGCCGCGTT
CCACATGACACAGCAGCTGTTCGCACTGCCGTTGCAACACAAGTTGGATT
CACTCAAGCGGTATGACGCCACACTCAGCGGTGGATACATTGCTCGCGGT
ATGGAGAGTTACAATCATCGACGCGCGTTCGATCTGAAGGAGGCGTACAA
CATCACCGACCCGATGCGTATCAAGCCCGATTACAGCAAGTATCCGCGCG
ACTTTGAACGCGTCAGCACGCAGTTCTACCACAGCATGAGCAACGCGGCG
TCGCGTCTCGCGATTGCGTGCGCGCTGGCGCTGGACATTCCGCTGGACAC
CTTTGGCCGCTGCGTGAAAGAGCGCGACTTGACGACGGTTCGCATGATGC
ACTACCCGCCGTGCCACTTTGTGCGCGGCCAAAGCACGGGTGACGACGAA
ACGTCGTCCATCCGTCTCGCCGAGCATCGCGACTTTGGCTTCTTCACGTT
CCTGTTCGTGCACAGCGCCGGTTTACAAGTGAAGCGTGAACGCGACGCGT
GCGGCGCACACGCGCAGAGCGTGTGGATGGACGTGCCGATACCGCCGCAG
GGCTGCGCGGTTGTGATGATTGGACGGCTTGCAGCGCGCGTGACGAATGA
TGTGTGGATGGCGCCGATGCATCGCGTGGTGGTGAGCGATGGGTGCGCGT
GCGGTAAGAGTCGGTACGCGGTGGCGTACTTTCACGAACCGGATAAACGG
AGCGTGATTGAGACGCACCCGCGCTTCTGTGCGGAGGGGGACGCGCGCGG
ATATGAGCCCATTTCGGGCGGCGCCAGTACGTCTGCGCTGGTTGAACAGA
GCTTGGTGAAGAAGGACGCCGCTTTGAACGCTTCGGACGCTGAGTGA