Gcaud9121.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9121.t1
Unique NameGcaud9121.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1167_length_13130_cov_4.829895contigNODE_1167_length_13130_cov_4.829895:777..1446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9121Gcaud9121Gracilaria caudata M_176_S67 malegeneNODE_1167_length_13130_cov_4.829895 777..1446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9121.t1.CDS1Gcaud9121.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1167_length_13130_cov_4.829895 777..1446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9121.t1.exon1Gcaud9121.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1167_length_13130_cov_4.829895 777..1446 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9121.t1.start1Gcaud9121.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1167_length_13130_cov_4.829895 1444..1446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9121.t1Gcaud9121.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1167_length_13130_cov_4.829895 777..1446 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9121.t1 ID=Gcaud9121.t1|Name=Gcaud9121.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=224bp
METSLMLQTTPPDLDQGNEPRLSSYSNSAPQSSSQALSLSNAAGSCPKNV
SPRPISNHQNSTEDVLARHELPPSACSQAVLSSACRRIGMSGSGTKDVLI
SRLAQKGVISHSRIVELKKNFDECGADISERNGRSRAPNWTKEESARLCH
VIADSRNTIILARYQRISTRAELDKPRHDPFAEEFRLLLNDPDFKPEPSE
AYDGVTLDVLPRIDPSVRKHFRDX
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spliced messenger RNA

>Gcaud9121.t1 ID=Gcaud9121.t1|Name=Gcaud9121.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=670bp|location=Sequence derived from alignment at NODE_1167_length_13130_cov_4.829895:777..1446- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACCAGTCTAATGCTTCAAACGACACCTCCTGATCTCGATCAAGG
TAATGAACCAAGACTATCTTCATATAGTAACTCCGCACCTCAATCCTCTT
CACAAGCGCTTAGCCTTTCAAATGCAGCCGGCTCTTGTCCAAAAAACGTT
TCACCCCGTCCTATATCAAACCATCAAAACTCTACTGAGGATGTTTTAGC
GCGTCATGAACTTCCACCTAGTGCCTGCTCTCAAGCAGTTCTTTCCTCCG
CATGTCGAAGAATTGGAATGTCTGGTTCTGGAACTAAGGATGTTCTAATA
TCACGATTGGCGCAAAAAGGGGTGATTTCACACTCGAGAATTGTTGAGCT
GAAGAAAAATTTCGATGAATGTGGTGCAGATATTTCGGAAAGAAACGGTC
GTAGCCGGGCACCGAACTGGACCAAAGAAGAAAGTGCCAGGCTGTGTCAT
GTGATTGCGGACTCAAGAAACACTATAATTTTAGCTAGGTATCAACGTAT
TTCTACACGAGCGGAGCTTGACAAGCCGCGACACGACCCGTTCGCCGAGG
AATTTCGCTTGCTGCTCAACGACCCTGATTTCAAACCAGAACCGTCGGAG
GCTTATGATGGGGTTACGTTGGATGTGCTTCCACGAATAGATCCTTCTGT
TCGCAAACACTTTCGGGACG
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protein sequence of Gcaud9121.t1

>Gcaud9121.t1 ID=Gcaud9121.t1|Name=Gcaud9121.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=224bp
METSLMLQTTPPDLDQGNEPRLSSYSNSAPQSSSQALSLSNAAGSCPKNV
SPRPISNHQNSTEDVLARHELPPSACSQAVLSSACRRIGMSGSGTKDVLI
SRLAQKGVISHSRIVELKKNFDECGADISERNGRSRAPNWTKEESARLCH
VIADSRNTIILARYQRISTRAELDKPRHDPFAEEFRLLLNDPDFKPEPSE
AYDGVTLDVLPRIDPSVRKHFRDX
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mRNA from alignment at NODE_1167_length_13130_cov_4.829895:777..1446-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9121.t1 ID=Gcaud9121.t1|Name=Gcaud9121.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=670bp|location=Sequence derived from alignment at NODE_1167_length_13130_cov_4.829895:777..1446- (Gracilaria caudata M_176_S67 male)
ATGGAAACCAGTCTAATGCTTCAAACGACACCTCCTGATCTCGATCAAGG
TAATGAACCAAGACTATCTTCATATAGTAACTCCGCACCTCAATCCTCTT
CACAAGCGCTTAGCCTTTCAAATGCAGCCGGCTCTTGTCCAAAAAACGTT
TCACCCCGTCCTATATCAAACCATCAAAACTCTACTGAGGATGTTTTAGC
GCGTCATGAACTTCCACCTAGTGCCTGCTCTCAAGCAGTTCTTTCCTCCG
CATGTCGAAGAATTGGAATGTCTGGTTCTGGAACTAAGGATGTTCTAATA
TCACGATTGGCGCAAAAAGGGGTGATTTCACACTCGAGAATTGTTGAGCT
GAAGAAAAATTTCGATGAATGTGGTGCAGATATTTCGGAAAGAAACGGTC
GTAGCCGGGCACCGAACTGGACCAAAGAAGAAAGTGCCAGGCTGTGTCAT
GTGATTGCGGACTCAAGAAACACTATAATTTTAGCTAGGTATCAACGTAT
TTCTACACGAGCGGAGCTTGACAAGCCGCGACACGACCCGTTCGCCGAGG
AATTTCGCTTGCTGCTCAACGACCCTGATTTCAAACCAGAACCGTCGGAG
GCTTATGATGGGGTTACGTTGGATGTGCTTCCACGAATAGATCCTTCTGT
TCGCAAACACTTTCGGGACG
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Coding sequence (CDS) from alignment at NODE_1167_length_13130_cov_4.829895:777..1446-

>Gcaud9121.t1 ID=Gcaud9121.t1|Name=Gcaud9121.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=670bp|location=Sequence derived from alignment at NODE_1167_length_13130_cov_4.829895:777..1446- (Gracilaria caudata M_176_S67 male)
ATGGAAACCAGTCTAATGCTTCAAACGACACCTCCTGATCTCGATCAAGG
TAATGAACCAAGACTATCTTCATATAGTAACTCCGCACCTCAATCCTCTT
CACAAGCGCTTAGCCTTTCAAATGCAGCCGGCTCTTGTCCAAAAAACGTT
TCACCCCGTCCTATATCAAACCATCAAAACTCTACTGAGGATGTTTTAGC
GCGTCATGAACTTCCACCTAGTGCCTGCTCTCAAGCAGTTCTTTCCTCCG
CATGTCGAAGAATTGGAATGTCTGGTTCTGGAACTAAGGATGTTCTAATA
TCACGATTGGCGCAAAAAGGGGTGATTTCACACTCGAGAATTGTTGAGCT
GAAGAAAAATTTCGATGAATGTGGTGCAGATATTTCGGAAAGAAACGGTC
GTAGCCGGGCACCGAACTGGACCAAAGAAGAAAGTGCCAGGCTGTGTCAT
GTGATTGCGGACTCAAGAAACACTATAATTTTAGCTAGGTATCAACGTAT
TTCTACACGAGCGGAGCTTGACAAGCCGCGACACGACCCGTTCGCCGAGG
AATTTCGCTTGCTGCTCAACGACCCTGATTTCAAACCAGAACCGTCGGAG
GCTTATGATGGGGTTACGTTGGATGTGCTTCCACGAATAGATCCTTCTGT
TCGCAAACACTTTCGGGACG
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