Gcaud9119.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9119.t1
Unique NameGcaud9119.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length93
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1585_length_9630_cov_9.359262contigNODE_1585_length_9630_cov_9.359262:911..1323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9119Gcaud9119Gracilaria caudata M_176_S67 malegeneNODE_1585_length_9630_cov_9.359262 911..1323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9119.t1Gcaud9119.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1585_length_9630_cov_9.359262 911..1323 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9119.t1.start1Gcaud9119.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1585_length_9630_cov_9.359262 911..913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9119.t1.CDS1Gcaud9119.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1585_length_9630_cov_9.359262 911..1084 +
Gcaud9119.t1.CDS2Gcaud9119.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1585_length_9630_cov_9.359262 1219..1323 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9119.t1.exon1Gcaud9119.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1585_length_9630_cov_9.359262 911..1084 +
Gcaud9119.t1.exon2Gcaud9119.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1585_length_9630_cov_9.359262 1219..1323 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9119.t1.intron1Gcaud9119.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1585_length_9630_cov_9.359262 1085..1218 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9119.t1.stop1Gcaud9119.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1585_length_9630_cov_9.359262 1321..1323 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9119.t1 ID=Gcaud9119.t1|Name=Gcaud9119.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=93bp
MQFFSPMFGDVKKWRVRGLSEFNVAKYILRAFNQLGAASQTGEFRQLYVD
ELLRAGNRCMRKQLPHRARRYSDARSVRKEAVVFSQAARIWR*
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spliced messenger RNA

>Gcaud9119.t1 ID=Gcaud9119.t1|Name=Gcaud9119.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=279bp|location=Sequence derived from alignment at NODE_1585_length_9630_cov_9.359262:911..1323+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCTTCTCGCCGATGTTTGGCGACGTGAAGAAGTGGAGGGTGCG
TGGGCTCAGCGAATTCAACGTTGCCAAGTACATTCTGCGCGCGTTCAATC
AGCTTGGGGCTGCGTCTCAAACGGGCGAGTTTCGTCAGCTCTACGTCGAT
GAGCTGCTGAGGGCAGGGAACAGATGTATGCGCAAACAACTTCCGCATCG
TGCAAGGCGTTACAGTGACGCGCGTTCTGTTCGAAAGGaggcggtggtat
tctcgcaagctgcacgcatatggcgctga
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protein sequence of Gcaud9119.t1

>Gcaud9119.t1 ID=Gcaud9119.t1|Name=Gcaud9119.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=93bp
MQFFSPMFGDVKKWRVRGLSEFNVAKYILRAFNQLGAASQTGEFRQLYVD
ELLRAGNRCMRKQLPHRARRYSDARSVRKEAVVFSQAARIWR*
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mRNA from alignment at NODE_1585_length_9630_cov_9.359262:911..1323+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9119.t1 ID=Gcaud9119.t1|Name=Gcaud9119.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=413bp|location=Sequence derived from alignment at NODE_1585_length_9630_cov_9.359262:911..1323+ (Gracilaria caudata M_176_S67 male)
ATGCAGTTCTTCTCGCCGATGTTTGGCGACGTGAAGAAGTGGAGGGTGCG
TGGGCTCAGCGAATTCAACGTTGCCAAGTACATTCTGCGCGCGTTCAATC
AGCTTGGGGCTGCGTCTCAAACGGGCGAGTTTCGTCAGCTCTACGTCGAT
GAGCTGCTGAGGGCAGGGAACAGAGTAGGTTTTGCGCCAGACTTCGGGCC
GTTGGATCGTAGGGTTGCTAGTACGATCTTCGAAAACCGTGTGATGGTCA
ATTCGTCCGGTGTTCGACAGGATTCTTGCACAGCGTATCTAACTCCCGTC
CAACACAGTGTATGCGCAAACAACTTCCGCATCGTGCAAGGCGTTACAGT
GACGCGCGTTCTGTTCGAAAGGaggcggtggtattctcgcaagctgcacg
catatggcgctga
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Coding sequence (CDS) from alignment at NODE_1585_length_9630_cov_9.359262:911..1323+

>Gcaud9119.t1 ID=Gcaud9119.t1|Name=Gcaud9119.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=279bp|location=Sequence derived from alignment at NODE_1585_length_9630_cov_9.359262:911..1323+ (Gracilaria caudata M_176_S67 male)
ATGCAGTTCTTCTCGCCGATGTTTGGCGACGTGAAGAAGTGGAGGGTGCG
TGGGCTCAGCGAATTCAACGTTGCCAAGTACATTCTGCGCGCGTTCAATC
AGCTTGGGGCTGCGTCTCAAACGGGCGAGTTTCGTCAGCTCTACGTCGAT
GAGCTGCTGAGGGCAGGGAACAGATGTATGCGCAAACAACTTCCGCATCG
TGCAAGGCGTTACAGTGACGCGCGTTCTGTTCGAAAGGaggcggtggtat
tctcgcaagctgcacgcatatggcgctga
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