Gcaud9115.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9115.t1
Unique Name	Gcaud9115.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	195

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_156_length_42793_cov_4.230575	contig	NODE_156_length_42793_cov_4.230575:32035..32756 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9115	Gcaud9115	Gracilaria caudata M_176_S67 male	gene	NODE_156_length_42793_cov_4.230575 32035..32756 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9115.t1	Gcaud9115.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_156_length_42793_cov_4.230575 32035..32756 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9115.t1.start1	Gcaud9115.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_156_length_42793_cov_4.230575 32035..32037 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9115.t1.CDS1	Gcaud9115.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_156_length_42793_cov_4.230575 32035..32560 +
Gcaud9115.t1.CDS2	Gcaud9115.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_156_length_42793_cov_4.230575 32698..32756 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9115.t1.exon1	Gcaud9115.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_156_length_42793_cov_4.230575 32035..32560 +
Gcaud9115.t1.exon2	Gcaud9115.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_156_length_42793_cov_4.230575 32698..32756 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9115.t1.intron1	Gcaud9115.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_156_length_42793_cov_4.230575 32561..32697 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9115.t1.stop1	Gcaud9115.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_156_length_42793_cov_4.230575 32754..32756 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_156_length_42793_cov_4.230575:32035..32756+
coding sequence from alignment at NODE_156_length_42793_cov_4.230575:32035..32756+

mRNA sequence

>Gcaud9115.t1 ID=Gcaud9115.t1|Name=Gcaud9115.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=195bp
MEALSSVSKHGIDATDERNNEYLTIDRGLRNCVRESEGPDYGSVRDENDS
LPTNDEDYRVRIEAVPETVKAEDIERSIQKYGASQKLASYLVLFFVGSVF
ITMWPHPRLKPTEHKSFVVGRDACIKSFNTCTTDGTISNRTCTEKLVTCE
SRLTNPSDRCVANYVNCTSWAHSLEVTPRNLCLYSVGNRDRCVQ*

spliced messenger RNA

>Gcaud9115.t1 ID=Gcaud9115.t1|Name=Gcaud9115.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp|location=Sequence derived from alignment at NODE_156_length_42793_cov_4.230575:32035..32756+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCCCTAAGCTCCGTTTCGAAACATGGGATAGATGCGACTGATGA
ACGTAATAATGAGTACTTAACTATTGATCGCGGTTTAAGAAACTGTGTGA
GAGAAAGCGAGGGACCTGATTATGGTTCAGTAAGAGATGAAAACGATTCC
CTTCCTACAAATGACGAAGACTACCGGGTGAGGATCGAGGCTGTTCCAGA
AACCGTGAAGGCAGAGGATATCGAGAGGAGTATTCAAAAGTATGGTGCTT
CCCAAAAACTGGCCTCATATCTCGTGTTGTTCTTCGTCGGGAGTGTGTTC
ATTACCATGTGGCCACATCCAAGGTTGAAGCCCACCGAGCACAAGAGTTT
TGTGGTCGGCAGAGATGCGTGTATCAAATCCTTCAACACATGTACGACAG
ATGGAACGATTTCGAACAGAACATGTACGGAAAAGCTCGTCACTTGTGAA
AGTCGTCTTACGAATCCGAGCGACCGTTGCGTTGCAAACTATGTGAATTG
TACAAGTTGGGCTCACTCTCTAGAAGTTACCCCCCGTAATCTTTGTTTGT
ATTCTGTTGGAAATCGCGATAGGTGTGTACAGTGA

protein sequence of Gcaud9115.t1

>Gcaud9115.t1 ID=Gcaud9115.t1|Name=Gcaud9115.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=195bp
MEALSSVSKHGIDATDERNNEYLTIDRGLRNCVRESEGPDYGSVRDENDS
LPTNDEDYRVRIEAVPETVKAEDIERSIQKYGASQKLASYLVLFFVGSVF
ITMWPHPRLKPTEHKSFVVGRDACIKSFNTCTTDGTISNRTCTEKLVTCE
SRLTNPSDRCVANYVNCTSWAHSLEVTPRNLCLYSVGNRDRCVQ*

mRNA from alignment at NODE_156_length_42793_cov_4.230575:32035..32756+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9115.t1 ID=Gcaud9115.t1|Name=Gcaud9115.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=722bp|location=Sequence derived from alignment at NODE_156_length_42793_cov_4.230575:32035..32756+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCCCTAAGCTCCGTTTCGAAACATGGGATAGATGCGACTGATGA
ACGTAATAATGAGTACTTAACTATTGATCGCGGTTTAAGAAACTGTGTGA
GAGAAAGCGAGGGACCTGATTATGGTTCAGTAAGAGATGAAAACGATTCC
CTTCCTACAAATGACGAAGACTACCGGGTGAGGATCGAGGCTGTTCCAGA
AACCGTGAAGGCAGAGGATATCGAGAGGAGTATTCAAAAGTATGGTGCTT
CCCAAAAACTGGCCTCATATCTCGTGTTGTTCTTCGTCGGGAGTGTGTTC
ATTACCATGTGGCCACATCCAAGGTTGAAGCCCACCGAGCACAAGAGTTT
TGTGGTCGGCAGAGATGCGTGTATCAAATCCTTCAACACATGTACGACAG
ATGGAACGATTTCGAACAGAACATGTACGGAAAAGCTCGTCACTTGTGAA
AGTCGTCTTACGAATCCGAGCGACCGTTGCGTTGCAAACTATGTGAATTG
TACAAGTTGGGCTCACTCTCTAGAAGGTGAGCATCAGAAAGAAGGTTTAG
AGCGTTGTGAGAATAACTTCAAACTCTGTCAGGAATACCACAAGAGGCAA
TCAAACTGGAAAGGTGTTGCTTTCGCGACGATGATACTAACCGTATTGGC
TGTCCTGTCACAGTTACCCCCCGTAATCTTTGTTTGTATTCTGTTGGAAA
TCGCGATAGGTGTGTACAGTGA

Coding sequence (CDS) from alignment at NODE_156_length_42793_cov_4.230575:32035..32756+

>Gcaud9115.t1 ID=Gcaud9115.t1|Name=Gcaud9115.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=585bp|location=Sequence derived from alignment at NODE_156_length_42793_cov_4.230575:32035..32756+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCCCTAAGCTCCGTTTCGAAACATGGGATAGATGCGACTGATGA
ACGTAATAATGAGTACTTAACTATTGATCGCGGTTTAAGAAACTGTGTGA
GAGAAAGCGAGGGACCTGATTATGGTTCAGTAAGAGATGAAAACGATTCC
CTTCCTACAAATGACGAAGACTACCGGGTGAGGATCGAGGCTGTTCCAGA
AACCGTGAAGGCAGAGGATATCGAGAGGAGTATTCAAAAGTATGGTGCTT
CCCAAAAACTGGCCTCATATCTCGTGTTGTTCTTCGTCGGGAGTGTGTTC
ATTACCATGTGGCCACATCCAAGGTTGAAGCCCACCGAGCACAAGAGTTT
TGTGGTCGGCAGAGATGCGTGTATCAAATCCTTCAACACATGTACGACAG
ATGGAACGATTTCGAACAGAACATGTACGGAAAAGCTCGTCACTTGTGAA
AGTCGTCTTACGAATCCGAGCGACCGTTGCGTTGCAAACTATGTGAATTG
TACAAGTTGGGCTCACTCTCTAGAAGTTACCCCCCGTAATCTTTGTTTGT
ATTCTGTTGGAAATCGCGATAGGTGTGTACAGTGA