Gcaud8765.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8765.t1
Unique Name	Gcaud8765.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	313

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:40929..41867 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10036.XP_005074825.1
Preferred name	PLCXD2
PFAMs	PI-PLC-X,Varsurf_PPLC
Max annot lvl	33208\|Metazoa
Evalue	1.17e-08
EggNOG OGs	KOG4306@1\|root,KOG4306@2759\|Eukaryota,39RCE@33154\|Opisthokonta,3BCHP@33208\|Metazoa,3CUVV@33213\|Bilateria,480K6@7711\|Chordata,48W4V@7742\|Vertebrata,3JD4F@40674\|Mammalia,35FDB@314146\|Euarchontoglires,4PYDF@9989\|Rodentia
Description	PI-PLC X domain-containing protein 2
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8765	Gcaud8765	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 40929..41867 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8765.t1.start1	Gcaud8765.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 40929..40931 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8765.t1.CDS1	Gcaud8765.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 40929..41867 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8765.t1.exon1	Gcaud8765.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 40929..41867 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8765.t1.stop1	Gcaud8765.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 41865..41867 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8765.t1	Gcaud8765.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 40929..41867 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:40929..41867+
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:40929..41867+

mRNA sequence

>Gcaud8765.t1 ID=Gcaud8765.t1|Name=Gcaud8765.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=313bp
MSTDSSASTASTASDPPTLYDVMLPGTHDSAAYTIRPDLSSRSTAFPLRL
RAIRTFLSTVQADFALTQKLTVYQQLQAGARFLDIRVSKRPSGSGDSQFW
TVHGMVLCVPLLDILQQINCFHQDTDSAHTVVTVFRAQFLRPAEEIQLTH
FVRRTLQHDVFEGTAAQLRRLPLYELPPNVLAGLCGMPLPVGWGRDVWID
TYSCHRKIAFLESVLQSYSSRCQRDDLFVLGWTVTPSVWDVTLRVLSFGY
CRPSVKSEAANMNSQFGAFAYSYSFALQKRCNVIFFDCFSHKLGSMVDSL
NPPSQSSYLWRS*

spliced messenger RNA

>Gcaud8765.t1 ID=Gcaud8765.t1|Name=Gcaud8765.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=939bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:40929..41867+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACCGATTCCTCCGCTTCGACCGCTTCGACCGCCTCAGACCCGCC
CACTCTCTACGATGTCATGCTACCGGGCACTCATGATTCTGCCGCCTACA
CCATTCGTCCAGACTTGTCATCGCGGTCCACAGCCTTTCCCCTTCGCCTA
CGAGCTATTCGTACCTTCCTTTCCACCGTGCAGGCCGATTTCGCGCTTAC
GCAGAAACTCACAGTTTACCAACAATTGCAAGCAGGAGCAAGATTCCTCG
ACATTCGAGTCTCAAAGCGTCCATCCGGTTCGGGCGACAGCCAGTTTTGG
ACCGTGCATGGCATGGTCCTATGCGTTCCCCTTTTAGATATCCTACAACA
AATTAACTGCTTTCATCAAGATACCGACTCCGCACACACCGTCGTCACAG
TGTTTCGCGCCCAGTTTTTGCGCCCTGCTGAAGAGATTCAACTGACGCAC
TTCGTGCGTCGAACTTTGCAGCACGACGTTTTCGAGGGCACGGCTGCACA
ACTGCGACGATTACCTCTGTATGAGCTGCCCCCGAATGTTCTCGCCGGTC
TGTGTGGCATGCCATTGCCTGTAGGGTGGGGACGCGATGTCTGGATCGAT
ACGTACTCTTGCCATCGAAAGATAGCCTTCCTTGAATCCGTTTTGCAATC
TTACTCTTCGCGTTGTCAACGCGATGACCTATTTGTACTTGGTTGGACCG
TAACTCCTTCCGTGTGGGACGTCACTCTACGAGTGTTGTCATTCGGCTAT
TGTAGACCTTCTGTTAAGTCAGAAGCTGCAAACATGAACTCACAGTTTGG
TGCTTTCGCATACTCTTATTCATTCGCACTACAAAAACGTTGTAATGTTA
TCTTCTTTGACTGCTTTTCTCACAAGCTTGGCTCAATGGTCGACTCACTC
AATCCTCCATCGCAAAGCTCGTATCTTTGGCGCTCATGA

protein sequence of Gcaud8765.t1

>Gcaud8765.t1 ID=Gcaud8765.t1|Name=Gcaud8765.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
MSTDSSASTASTASDPPTLYDVMLPGTHDSAAYTIRPDLSSRSTAFPLRL
RAIRTFLSTVQADFALTQKLTVYQQLQAGARFLDIRVSKRPSGSGDSQFW
TVHGMVLCVPLLDILQQINCFHQDTDSAHTVVTVFRAQFLRPAEEIQLTH
FVRRTLQHDVFEGTAAQLRRLPLYELPPNVLAGLCGMPLPVGWGRDVWID
TYSCHRKIAFLESVLQSYSSRCQRDDLFVLGWTVTPSVWDVTLRVLSFGY
CRPSVKSEAANMNSQFGAFAYSYSFALQKRCNVIFFDCFSHKLGSMVDSL
NPPSQSSYLWRS*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:40929..41867+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8765.t1 ID=Gcaud8765.t1|Name=Gcaud8765.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=939bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:40929..41867+ (Gracilaria caudata M_176_S67 male)
ATGTCCACCGATTCCTCCGCTTCGACCGCTTCGACCGCCTCAGACCCGCC
CACTCTCTACGATGTCATGCTACCGGGCACTCATGATTCTGCCGCCTACA
CCATTCGTCCAGACTTGTCATCGCGGTCCACAGCCTTTCCCCTTCGCCTA
CGAGCTATTCGTACCTTCCTTTCCACCGTGCAGGCCGATTTCGCGCTTAC
GCAGAAACTCACAGTTTACCAACAATTGCAAGCAGGAGCAAGATTCCTCG
ACATTCGAGTCTCAAAGCGTCCATCCGGTTCGGGCGACAGCCAGTTTTGG
ACCGTGCATGGCATGGTCCTATGCGTTCCCCTTTTAGATATCCTACAACA
AATTAACTGCTTTCATCAAGATACCGACTCCGCACACACCGTCGTCACAG
TGTTTCGCGCCCAGTTTTTGCGCCCTGCTGAAGAGATTCAACTGACGCAC
TTCGTGCGTCGAACTTTGCAGCACGACGTTTTCGAGGGCACGGCTGCACA
ACTGCGACGATTACCTCTGTATGAGCTGCCCCCGAATGTTCTCGCCGGTC
TGTGTGGCATGCCATTGCCTGTAGGGTGGGGACGCGATGTCTGGATCGAT
ACGTACTCTTGCCATCGAAAGATAGCCTTCCTTGAATCCGTTTTGCAATC
TTACTCTTCGCGTTGTCAACGCGATGACCTATTTGTACTTGGTTGGACCG
TAACTCCTTCCGTGTGGGACGTCACTCTACGAGTGTTGTCATTCGGCTAT
TGTAGACCTTCTGTTAAGTCAGAAGCTGCAAACATGAACTCACAGTTTGG
TGCTTTCGCATACTCTTATTCATTCGCACTACAAAAACGTTGTAATGTTA
TCTTCTTTGACTGCTTTTCTCACAAGCTTGGCTCAATGGTCGACTCACTC
AATCCTCCATCGCAAAGCTCGTATCTTTGGCGCTCATGA

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:40929..41867+

>Gcaud8765.t1 ID=Gcaud8765.t1|Name=Gcaud8765.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=939bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:40929..41867+ (Gracilaria caudata M_176_S67 male)
ATGTCCACCGATTCCTCCGCTTCGACCGCTTCGACCGCCTCAGACCCGCC
CACTCTCTACGATGTCATGCTACCGGGCACTCATGATTCTGCCGCCTACA
CCATTCGTCCAGACTTGTCATCGCGGTCCACAGCCTTTCCCCTTCGCCTA
CGAGCTATTCGTACCTTCCTTTCCACCGTGCAGGCCGATTTCGCGCTTAC
GCAGAAACTCACAGTTTACCAACAATTGCAAGCAGGAGCAAGATTCCTCG
ACATTCGAGTCTCAAAGCGTCCATCCGGTTCGGGCGACAGCCAGTTTTGG
ACCGTGCATGGCATGGTCCTATGCGTTCCCCTTTTAGATATCCTACAACA
AATTAACTGCTTTCATCAAGATACCGACTCCGCACACACCGTCGTCACAG
TGTTTCGCGCCCAGTTTTTGCGCCCTGCTGAAGAGATTCAACTGACGCAC
TTCGTGCGTCGAACTTTGCAGCACGACGTTTTCGAGGGCACGGCTGCACA
ACTGCGACGATTACCTCTGTATGAGCTGCCCCCGAATGTTCTCGCCGGTC
TGTGTGGCATGCCATTGCCTGTAGGGTGGGGACGCGATGTCTGGATCGAT
ACGTACTCTTGCCATCGAAAGATAGCCTTCCTTGAATCCGTTTTGCAATC
TTACTCTTCGCGTTGTCAACGCGATGACCTATTTGTACTTGGTTGGACCG
TAACTCCTTCCGTGTGGGACGTCACTCTACGAGTGTTGTCATTCGGCTAT
TGTAGACCTTCTGTTAAGTCAGAAGCTGCAAACATGAACTCACAGTTTGG
TGCTTTCGCATACTCTTATTCATTCGCACTACAAAAACGTTGTAATGTTA
TCTTCTTTGACTGCTTTTCTCACAAGCTTGGCTCAATGGTCGACTCACTC
AATCCTCCATCGCAAAGCTCGTATCTTTGGCGCTCATGA