Gcaud8756.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8756.t1
Unique NameGcaud8756.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_40_length_68803_cov_4.393963contigNODE_40_length_68803_cov_4.393963:19704..20126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8756Gcaud8756Gracilaria caudata M_176_S67 malegeneNODE_40_length_68803_cov_4.393963 19704..20126 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8756.t1.start1Gcaud8756.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_40_length_68803_cov_4.393963 19704..19706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8756.t1.CDS1Gcaud8756.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_40_length_68803_cov_4.393963 19704..20126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8756.t1.exon1Gcaud8756.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_40_length_68803_cov_4.393963 19704..20126 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8756.t1.stop1Gcaud8756.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_40_length_68803_cov_4.393963 20124..20126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8756.t1Gcaud8756.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_40_length_68803_cov_4.393963 19704..20126 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8756.t1 ID=Gcaud8756.t1|Name=Gcaud8756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=141bp
MMCNTELGAETHNIDARGIYTYSGVCDDLYFRVHNWRKWEGVAAAVQDVS
TGTWYSSDFPPTTGLTAIAFHQPPNFDFFTDPNFDFSTWTPVERHFDLDG
QGAFGQMWRDHQTFVWTIERIDFGNFDQGLTYYKTILPFC*
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spliced messenger RNA

>Gcaud8756.t1 ID=Gcaud8756.t1|Name=Gcaud8756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:19704..20126+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTGTAACACTGAACTTGGCGCAGAGACACACAACATTGATGCTCG
TGGAATATACACGTACAGTGGCGTTTGCGATGATCTCTACTTCCGTGTTC
ACAACTGGAGAAAGTGGGAAGGTGTGGCCGCAGCCGTTCAAGATGTAAGC
ACCGGCACGTGGTATTCATCCGATTTCCCTCCGACTACAGGTCTCACTGC
CATCGCATTCCATCAACCGCCCAACTTCGACTTCTTTACTGATCCCAACT
TTGACTTCAGTACTTGGACCCCGGTTGAGCGACACTTTGATCTCGATGGC
CAGGGTGCATTTGGTCAAATGTGGCGTGATCATCAGACATTTGTGTGGAC
AATCGAGAGGATCGACTTTGGGAACTTTGATCAGGGTCTCACATATTACA
AGACCATTCTTCCTTTCTGTTAG
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protein sequence of Gcaud8756.t1

>Gcaud8756.t1 ID=Gcaud8756.t1|Name=Gcaud8756.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=141bp
MMCNTELGAETHNIDARGIYTYSGVCDDLYFRVHNWRKWEGVAAAVQDVS
TGTWYSSDFPPTTGLTAIAFHQPPNFDFFTDPNFDFSTWTPVERHFDLDG
QGAFGQMWRDHQTFVWTIERIDFGNFDQGLTYYKTILPFC*
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mRNA from alignment at NODE_40_length_68803_cov_4.393963:19704..20126+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8756.t1 ID=Gcaud8756.t1|Name=Gcaud8756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:19704..20126+ (Gracilaria caudata M_176_S67 male)
ATGATGTGTAACACTGAACTTGGCGCAGAGACACACAACATTGATGCTCG
TGGAATATACACGTACAGTGGCGTTTGCGATGATCTCTACTTCCGTGTTC
ACAACTGGAGAAAGTGGGAAGGTGTGGCCGCAGCCGTTCAAGATGTAAGC
ACCGGCACGTGGTATTCATCCGATTTCCCTCCGACTACAGGTCTCACTGC
CATCGCATTCCATCAACCGCCCAACTTCGACTTCTTTACTGATCCCAACT
TTGACTTCAGTACTTGGACCCCGGTTGAGCGACACTTTGATCTCGATGGC
CAGGGTGCATTTGGTCAAATGTGGCGTGATCATCAGACATTTGTGTGGAC
AATCGAGAGGATCGACTTTGGGAACTTTGATCAGGGTCTCACATATTACA
AGACCATTCTTCCTTTCTGTTAG
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Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:19704..20126+

>Gcaud8756.t1 ID=Gcaud8756.t1|Name=Gcaud8756.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=423bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:19704..20126+ (Gracilaria caudata M_176_S67 male)
ATGATGTGTAACACTGAACTTGGCGCAGAGACACACAACATTGATGCTCG
TGGAATATACACGTACAGTGGCGTTTGCGATGATCTCTACTTCCGTGTTC
ACAACTGGAGAAAGTGGGAAGGTGTGGCCGCAGCCGTTCAAGATGTAAGC
ACCGGCACGTGGTATTCATCCGATTTCCCTCCGACTACAGGTCTCACTGC
CATCGCATTCCATCAACCGCCCAACTTCGACTTCTTTACTGATCCCAACT
TTGACTTCAGTACTTGGACCCCGGTTGAGCGACACTTTGATCTCGATGGC
CAGGGTGCATTTGGTCAAATGTGGCGTGATCATCAGACATTTGTGTGGAC
AATCGAGAGGATCGACTTTGGGAACTTTGATCAGGGTCTCACATATTACA
AGACCATTCTTCCTTTCTGTTAG
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