Gcaud8752.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8752.t1
Unique Name	Gcaud8752.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	383

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:13081..14229 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5286.M7WN42
Preferred name	CET1
PFAMs	mRNA_triPase
Max annot lvl	4751\|Fungi
KEGG rclass	RC00002
KEGG ko	ko:K01098
KEGG Reaction	R10814
GOs	GO:0003674,GO:0003824,GO:0004651,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006355,GO:0006357,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009452,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031533,GO:0032784,GO:0032786,GO:0032879,GO:0032880,GO:0032968,GO:0032991,GO:0034243,GO:0034641,GO:0034708,GO:0035690,GO:0036260,GO:0042221,GO:0042493,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070887,GO:0071704,GO:0080090,GO:0090304,GO:0098501,GO:0098507,GO:0098518,GO:1900180,GO:1900182,GO:1901360,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1990234,GO:2000112,GO:2001141
Evalue	1.34e-20
EggNOG OGs	2AM1P@1\|root,2RZAX@2759\|Eukaryota,39XKZ@33154\|Opisthokonta,3NXVE@4751\|Fungi,3V0VE@5204\|Basidiomycota,2YE9G@29000\|Pucciniomycotina
Description	mRNA capping enzyme, beta chain
COG category	S
BRITE	ko00000,ko01000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8752	Gcaud8752	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 13081..14229 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8752.t1.start1	Gcaud8752.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 13081..13083 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8752.t1.CDS1	Gcaud8752.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 13081..14229 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8752.t1.exon1	Gcaud8752.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 13081..14229 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8752.t1.stop1	Gcaud8752.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 14227..14229 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8752.t1	Gcaud8752.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 13081..14229 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:13081..14229+
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:13081..14229+

mRNA sequence

>Gcaud8752.t1 ID=Gcaud8752.t1|Name=Gcaud8752.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=383bp
MLPHIFDPGSRPPFAHFQPEYPLPAVFIPMVYDPFGSKADNKDNASAQKM
VSMRRPPICDAQLSSLEWGVPESRKRSRTEANLASDQNPLRSAPQSAQQT
KSTEQSEKRESIRYVEKVVYEEPTTILGVPPVVDDRIRHVVDFILKHVKS
NNVEIEVKLGLLIAKENGVRAIKILPVKCETSISPETNQETRFESNVGEK
VFYTLNNTLNKRVELTERETKNKVHYTRSKHLDVYWPGKVRETKELRKNP
DGSEYYQTIRVQSKTRLGDMNVMCPMNLLDMRYSASLEEDAQIPPNSAPM
RQRMKDRISYKYEYLSIDITCVTMESLDSQAEGQRTYEVEVEIDPIANLF
QEVTKYLRGDGTSKLFDIATCLVNTVRILQEA*

spliced messenger RNA

>Gcaud8752.t1 ID=Gcaud8752.t1|Name=Gcaud8752.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:13081..14229+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCTCACATCTTTGATCCAGGCAGCCGTCCCCCCTTTGCACACTT
TCAACCGGAATATCCTCTCCCAGCTGTGTTCATCCCCATGGTGTACGACC
CTTTCGGTTCCAAGGCTGACAACAAGGATAATGCTTCAGCACAGAAAATG
GTGTCCATGCGACGACCGCCAATATGCGACGCACAGCTTTCCTCTTTAGA
GTGGGGGGTTCCGGAATCCAGGAAACGAAGTCGAACTGAAGCAAATCTTG
CCTCAGACCAAAATCCCCTCAGATCCGCTCCTCAATCCGCCCAGCAGACA
AAGTCTACAGAACAATCAGAGAAACGCGAAAGTATCAGATACGTGGAAAA
AGTTGTTTACGAAGAACCCACAACGATTCTTGGAGTGCCTCCTGTGGTTG
ATGATCGTATTCGTCACGTAGTGGACTTCATCTTGAAGCATGTCAAGAGC
AATAATGTTGAAATCGAGGTCAAGCTTGGTCTGCTTATTGCAAAGGAAAA
CGGTGTTCGTGCTATCAAAATCTTACCGGTCAAATGTGAAACATCAATAA
GTCCGGAAACCAACCAAGAAACTCGCTTTGAGAGTAATGTCGGAGAGAAA
GTCTTTTACACGCTTAACAACACCCTCAACAAGAGAGTTGAACTAACAGA
ACGGGAAACCAAGAACAAGGTGCATTACACCCGTTCCAAACACCTTGATG
TTTACTGGCCTGGAAAAGTACGAGAAACGAAGGAGCTTCGAAAAAATCCA
GATGGATCCGAGTACTACCAAACTATTCGAGTGCAATCGAAAACTCGCTT
AGGTGATATGAACGTCATGTGTCCCATGAATCTGCTCGACATGAGGTACT
CAGCAAGTCTTGAAGAAGATGCGCAGATTCCACCGAATTCCGCCCCAATG
AGACAAAGAATGAAAGATAGAATATCTTACAAGTATGAGTATCTAAGCAT
TGATATAACGTGCGTTACCATGGAATCGTTGGACAGCCAGGCCGAAGGTC
AAAGAACTTATGAGGTTGAGGTGGAAATTGATCCCATTGCCAATCTCTTC
CAGGAAGTCACCAAGTATTTGCGGGGCGATGGTACTTCAAAACTTTTCGA
CATAGCCACATGTTTAGTCAACACCGTGCGTATTTTGCAGGAAGCATAA

protein sequence of Gcaud8752.t1

>Gcaud8752.t1 ID=Gcaud8752.t1|Name=Gcaud8752.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=383bp
MLPHIFDPGSRPPFAHFQPEYPLPAVFIPMVYDPFGSKADNKDNASAQKM
VSMRRPPICDAQLSSLEWGVPESRKRSRTEANLASDQNPLRSAPQSAQQT
KSTEQSEKRESIRYVEKVVYEEPTTILGVPPVVDDRIRHVVDFILKHVKS
NNVEIEVKLGLLIAKENGVRAIKILPVKCETSISPETNQETRFESNVGEK
VFYTLNNTLNKRVELTERETKNKVHYTRSKHLDVYWPGKVRETKELRKNP
DGSEYYQTIRVQSKTRLGDMNVMCPMNLLDMRYSASLEEDAQIPPNSAPM
RQRMKDRISYKYEYLSIDITCVTMESLDSQAEGQRTYEVEVEIDPIANLF
QEVTKYLRGDGTSKLFDIATCLVNTVRILQEA*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:13081..14229+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8752.t1 ID=Gcaud8752.t1|Name=Gcaud8752.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:13081..14229+ (Gracilaria caudata M_176_S67 male)
ATGCTTCCTCACATCTTTGATCCAGGCAGCCGTCCCCCCTTTGCACACTT
TCAACCGGAATATCCTCTCCCAGCTGTGTTCATCCCCATGGTGTACGACC
CTTTCGGTTCCAAGGCTGACAACAAGGATAATGCTTCAGCACAGAAAATG
GTGTCCATGCGACGACCGCCAATATGCGACGCACAGCTTTCCTCTTTAGA
GTGGGGGGTTCCGGAATCCAGGAAACGAAGTCGAACTGAAGCAAATCTTG
CCTCAGACCAAAATCCCCTCAGATCCGCTCCTCAATCCGCCCAGCAGACA
AAGTCTACAGAACAATCAGAGAAACGCGAAAGTATCAGATACGTGGAAAA
AGTTGTTTACGAAGAACCCACAACGATTCTTGGAGTGCCTCCTGTGGTTG
ATGATCGTATTCGTCACGTAGTGGACTTCATCTTGAAGCATGTCAAGAGC
AATAATGTTGAAATCGAGGTCAAGCTTGGTCTGCTTATTGCAAAGGAAAA
CGGTGTTCGTGCTATCAAAATCTTACCGGTCAAATGTGAAACATCAATAA
GTCCGGAAACCAACCAAGAAACTCGCTTTGAGAGTAATGTCGGAGAGAAA
GTCTTTTACACGCTTAACAACACCCTCAACAAGAGAGTTGAACTAACAGA
ACGGGAAACCAAGAACAAGGTGCATTACACCCGTTCCAAACACCTTGATG
TTTACTGGCCTGGAAAAGTACGAGAAACGAAGGAGCTTCGAAAAAATCCA
GATGGATCCGAGTACTACCAAACTATTCGAGTGCAATCGAAAACTCGCTT
AGGTGATATGAACGTCATGTGTCCCATGAATCTGCTCGACATGAGGTACT
CAGCAAGTCTTGAAGAAGATGCGCAGATTCCACCGAATTCCGCCCCAATG
AGACAAAGAATGAAAGATAGAATATCTTACAAGTATGAGTATCTAAGCAT
TGATATAACGTGCGTTACCATGGAATCGTTGGACAGCCAGGCCGAAGGTC
AAAGAACTTATGAGGTTGAGGTGGAAATTGATCCCATTGCCAATCTCTTC
CAGGAAGTCACCAAGTATTTGCGGGGCGATGGTACTTCAAAACTTTTCGA
CATAGCCACATGTTTAGTCAACACCGTGCGTATTTTGCAGGAAGCATAA

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:13081..14229+

>Gcaud8752.t1 ID=Gcaud8752.t1|Name=Gcaud8752.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1149bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:13081..14229+ (Gracilaria caudata M_176_S67 male)
ATGCTTCCTCACATCTTTGATCCAGGCAGCCGTCCCCCCTTTGCACACTT
TCAACCGGAATATCCTCTCCCAGCTGTGTTCATCCCCATGGTGTACGACC
CTTTCGGTTCCAAGGCTGACAACAAGGATAATGCTTCAGCACAGAAAATG
GTGTCCATGCGACGACCGCCAATATGCGACGCACAGCTTTCCTCTTTAGA
GTGGGGGGTTCCGGAATCCAGGAAACGAAGTCGAACTGAAGCAAATCTTG
CCTCAGACCAAAATCCCCTCAGATCCGCTCCTCAATCCGCCCAGCAGACA
AAGTCTACAGAACAATCAGAGAAACGCGAAAGTATCAGATACGTGGAAAA
AGTTGTTTACGAAGAACCCACAACGATTCTTGGAGTGCCTCCTGTGGTTG
ATGATCGTATTCGTCACGTAGTGGACTTCATCTTGAAGCATGTCAAGAGC
AATAATGTTGAAATCGAGGTCAAGCTTGGTCTGCTTATTGCAAAGGAAAA
CGGTGTTCGTGCTATCAAAATCTTACCGGTCAAATGTGAAACATCAATAA
GTCCGGAAACCAACCAAGAAACTCGCTTTGAGAGTAATGTCGGAGAGAAA
GTCTTTTACACGCTTAACAACACCCTCAACAAGAGAGTTGAACTAACAGA
ACGGGAAACCAAGAACAAGGTGCATTACACCCGTTCCAAACACCTTGATG
TTTACTGGCCTGGAAAAGTACGAGAAACGAAGGAGCTTCGAAAAAATCCA
GATGGATCCGAGTACTACCAAACTATTCGAGTGCAATCGAAAACTCGCTT
AGGTGATATGAACGTCATGTGTCCCATGAATCTGCTCGACATGAGGTACT
CAGCAAGTCTTGAAGAAGATGCGCAGATTCCACCGAATTCCGCCCCAATG
AGACAAAGAATGAAAGATAGAATATCTTACAAGTATGAGTATCTAAGCAT
TGATATAACGTGCGTTACCATGGAATCGTTGGACAGCCAGGCCGAAGGTC
AAAGAACTTATGAGGTTGAGGTGGAAATTGATCCCATTGCCAATCTCTTC
CAGGAAGTCACCAAGTATTTGCGGGGCGATGGTACTTCAAAACTTTTCGA
CATAGCCACATGTTTAGTCAACACCGTGCGTATTTTGCAGGAAGCATAA