Gcaud8751.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8751.t1
Unique NameGcaud8751.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_40_length_68803_cov_4.393963contigNODE_40_length_68803_cov_4.393963:11583..12551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707988.1
Preferred nameCERS5
PFAMsHomeobox,TRAM_LAG1_CLN8
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00064
KEGG koko:K04710
KEGG ReactionR01496,R06517
KEGG Pathwayko00600,ko01100,ko04071,map00600,map01100,map04071
KEGG ModuleM00094,M00099
GOsGO:0000981,GO:0003674,GO:0003700,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005783,GO:0005789,GO:0006355,GO:0006357,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006643,GO:0006665,GO:0006672,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007568,GO:0008150,GO:0008152,GO:0008285,GO:0008544,GO:0008610,GO:0009058,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010624,GO:0010626,GO:0010628,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0014013,GO:0014014,GO:0016020,GO:0016021,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019216,GO:0019219,GO:0019222,GO:0019866,GO:0022008,GO:0023052,GO:0030148,GO:0030154,GO:0030216,GO:0030334,GO:0030336,GO:0030424,GO:0030855,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031345,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032879,GO:0032933,GO:0033554,GO:0034641,GO:0040012,GO:0040013,GO:0042127,GO:0042175,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043588,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045833,GO:0045834,GO:0045893,GO:0045935,GO:0045944,GO:0046467,GO:0046486,GO:0046513,GO:0046889,GO:0046890,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050291,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050995,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051270,GO:0051271,GO:0051716,GO:0051960,GO:0051961,GO:0060251,GO:0060253,GO:0060255,GO:0060284,GO:0060429,GO:0065007,GO:0070570,GO:0070571,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0098827,GO:0120025,GO:0120035,GO:0140110,GO:1900147,GO:1900148,GO:1901564,GO:1901566,GO:1901576,GO:1902680,GO:1903034,GO:1903035,GO:1903506,GO:1903508,GO:1903975,GO:1903976,GO:1905044,GO:1905045,GO:2000026,GO:2000112,GO:2000145,GO:2000146,GO:2001141
Evalue1.95e-58
EggNOG OGsCOG5058@1|root,KOG1607@2759|Eukaryota
EC2.3.1.24
Descriptionsphingosine N-acyltransferase activity
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8751Gcaud8751Gracilaria caudata M_176_S67 malegeneNODE_40_length_68803_cov_4.393963 11583..12551 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8751.t1.stop1Gcaud8751.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_40_length_68803_cov_4.393963 11583..11585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8751.t1.CDS1Gcaud8751.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_40_length_68803_cov_4.393963 11583..12551 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8751.t1.exon1Gcaud8751.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_40_length_68803_cov_4.393963 11583..12551 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8751.t1.start1Gcaud8751.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_40_length_68803_cov_4.393963 12549..12551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8751.t1Gcaud8751.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_40_length_68803_cov_4.393963 11583..12551 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8751.t1 ID=Gcaud8751.t1|Name=Gcaud8751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=323bp
MFLRDFVDTLKQQQQFRSPETPSLLNPNRSLADLYMLIILAIVFLTFRLA
LDKYLFSVLFRSYSPKLQRKLSENLFYSVYYTAAFSFFVFKVTPSIEWEI
DLLSNQAHVVKDFLFPYPPPMAPSEHQYYSQAGAFYVAASVFLICFDSRR
ADFAELCLHHFVTLGMVIVSYLYSYVRTGIVILALHDLGDIFLYTAKFLH
YLGLAGMDTAVFSIFAVTFYVTRLLLFSRLVHMIVVETLQTVVTDASFNK
WAMYYDTYVLHYVFFVAFAGILLLLHCFWFTLILKMIHRELFQGKKISEQ
GDIRSDGEGDEEMTEFENDGDN*
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spliced messenger RNA

>Gcaud8751.t1 ID=Gcaud8751.t1|Name=Gcaud8751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:11583..12551- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCTGAGGGATTTTGTCGATACTCTCAAACAACAACAACAGTTTCG
CTCACCTGAAACCCCCTCATTGTTGAATCCAAATCGCTCTCTTGCAGATC
TGTATATGCTCATCATCCTCGCCATTGTTTTTCTGACGTTTCGACTTGCA
CTGGATAAGTATTTGTTCTCCGTTCTTTTTCGATCTTACTCTCCAAAGTT
ACAACGCAAGCTCTCAGAGAACCTGTTTTATTCGGTTTATTATACAGCGG
CATTTTCATTCTTTGTGTTCAAAGTTACACCCTCGATAGAATGGGAGATC
GATCTTCTTTCAAACCAAGCTCATGTAGTGAAGGATTTCCTATTTCCATA
CCCTCCGCCCATGGCGCCTAGCGAGCACCAATACTACAGCCAAGCGGGAG
CGTTCTATGTCGCAGCGAGCGTGTTCTTGATTTGTTTCGATTCTCGACGA
GCCGATTTTGCAGAACTGTGTCTACACCATTTTGTAACGCTTGGAATGGT
GATTGTGAGTTATTTGTACAGCTATGTACGCACAGGCATTGTGATTCTCG
CGTTGCATGATTTGGGTGATATCTTCCTTTACACAGCAAAGTTCTTGCAC
TATTTGGGACTTGCTGGCATGGATACTGCCGTGTTTTCGATATTTGCGGT
TACTTTCTACGTCACAAGGCTTCTGTTGTTTTCGCGACTGGTGCATATGA
TCGTTGTGGAGACTTTGCAGACGGTTGTGACAGACGCTTCTTTTAACAAA
TGGGCAATGTATTATGATACGTATGTATTGCATTATGTGTTCTTCGTGGC
TTTTGCCGGCATTTTGTTGCTGTTGCATTGCTTTTGGTTTACGTTGATTT
TGAAGATGATTCATCGGGAACTGTTTCAGGGCAAGAAGATATCTGAGCAA
GGTGATATTCGAAGTGATGGGGAAGGTGATGAGGAAATGACCGAATTTGA
AAACGATGGTGACAACTAG
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protein sequence of Gcaud8751.t1

>Gcaud8751.t1 ID=Gcaud8751.t1|Name=Gcaud8751.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=323bp
MFLRDFVDTLKQQQQFRSPETPSLLNPNRSLADLYMLIILAIVFLTFRLA
LDKYLFSVLFRSYSPKLQRKLSENLFYSVYYTAAFSFFVFKVTPSIEWEI
DLLSNQAHVVKDFLFPYPPPMAPSEHQYYSQAGAFYVAASVFLICFDSRR
ADFAELCLHHFVTLGMVIVSYLYSYVRTGIVILALHDLGDIFLYTAKFLH
YLGLAGMDTAVFSIFAVTFYVTRLLLFSRLVHMIVVETLQTVVTDASFNK
WAMYYDTYVLHYVFFVAFAGILLLLHCFWFTLILKMIHRELFQGKKISEQ
GDIRSDGEGDEEMTEFENDGDN*
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mRNA from alignment at NODE_40_length_68803_cov_4.393963:11583..12551-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8751.t1 ID=Gcaud8751.t1|Name=Gcaud8751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:11583..12551- (Gracilaria caudata M_176_S67 male)
ATGTTTCTGAGGGATTTTGTCGATACTCTCAAACAACAACAACAGTTTCG
CTCACCTGAAACCCCCTCATTGTTGAATCCAAATCGCTCTCTTGCAGATC
TGTATATGCTCATCATCCTCGCCATTGTTTTTCTGACGTTTCGACTTGCA
CTGGATAAGTATTTGTTCTCCGTTCTTTTTCGATCTTACTCTCCAAAGTT
ACAACGCAAGCTCTCAGAGAACCTGTTTTATTCGGTTTATTATACAGCGG
CATTTTCATTCTTTGTGTTCAAAGTTACACCCTCGATAGAATGGGAGATC
GATCTTCTTTCAAACCAAGCTCATGTAGTGAAGGATTTCCTATTTCCATA
CCCTCCGCCCATGGCGCCTAGCGAGCACCAATACTACAGCCAAGCGGGAG
CGTTCTATGTCGCAGCGAGCGTGTTCTTGATTTGTTTCGATTCTCGACGA
GCCGATTTTGCAGAACTGTGTCTACACCATTTTGTAACGCTTGGAATGGT
GATTGTGAGTTATTTGTACAGCTATGTACGCACAGGCATTGTGATTCTCG
CGTTGCATGATTTGGGTGATATCTTCCTTTACACAGCAAAGTTCTTGCAC
TATTTGGGACTTGCTGGCATGGATACTGCCGTGTTTTCGATATTTGCGGT
TACTTTCTACGTCACAAGGCTTCTGTTGTTTTCGCGACTGGTGCATATGA
TCGTTGTGGAGACTTTGCAGACGGTTGTGACAGACGCTTCTTTTAACAAA
TGGGCAATGTATTATGATACGTATGTATTGCATTATGTGTTCTTCGTGGC
TTTTGCCGGCATTTTGTTGCTGTTGCATTGCTTTTGGTTTACGTTGATTT
TGAAGATGATTCATCGGGAACTGTTTCAGGGCAAGAAGATATCTGAGCAA
GGTGATATTCGAAGTGATGGGGAAGGTGATGAGGAAATGACCGAATTTGA
AAACGATGGTGACAACTAG
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Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:11583..12551-

>Gcaud8751.t1 ID=Gcaud8751.t1|Name=Gcaud8751.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=969bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:11583..12551- (Gracilaria caudata M_176_S67 male)
ATGTTTCTGAGGGATTTTGTCGATACTCTCAAACAACAACAACAGTTTCG
CTCACCTGAAACCCCCTCATTGTTGAATCCAAATCGCTCTCTTGCAGATC
TGTATATGCTCATCATCCTCGCCATTGTTTTTCTGACGTTTCGACTTGCA
CTGGATAAGTATTTGTTCTCCGTTCTTTTTCGATCTTACTCTCCAAAGTT
ACAACGCAAGCTCTCAGAGAACCTGTTTTATTCGGTTTATTATACAGCGG
CATTTTCATTCTTTGTGTTCAAAGTTACACCCTCGATAGAATGGGAGATC
GATCTTCTTTCAAACCAAGCTCATGTAGTGAAGGATTTCCTATTTCCATA
CCCTCCGCCCATGGCGCCTAGCGAGCACCAATACTACAGCCAAGCGGGAG
CGTTCTATGTCGCAGCGAGCGTGTTCTTGATTTGTTTCGATTCTCGACGA
GCCGATTTTGCAGAACTGTGTCTACACCATTTTGTAACGCTTGGAATGGT
GATTGTGAGTTATTTGTACAGCTATGTACGCACAGGCATTGTGATTCTCG
CGTTGCATGATTTGGGTGATATCTTCCTTTACACAGCAAAGTTCTTGCAC
TATTTGGGACTTGCTGGCATGGATACTGCCGTGTTTTCGATATTTGCGGT
TACTTTCTACGTCACAAGGCTTCTGTTGTTTTCGCGACTGGTGCATATGA
TCGTTGTGGAGACTTTGCAGACGGTTGTGACAGACGCTTCTTTTAACAAA
TGGGCAATGTATTATGATACGTATGTATTGCATTATGTGTTCTTCGTGGC
TTTTGCCGGCATTTTGTTGCTGTTGCATTGCTTTTGGTTTACGTTGATTT
TGAAGATGATTCATCGGGAACTGTTTCAGGGCAAGAAGATATCTGAGCAA
GGTGATATTCGAAGTGATGGGGAAGGTGATGAGGAAATGACCGAATTTGA
AAACGATGGTGACAACTAG
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