Gcaud8749.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8749.t1
Unique NameGcaud8749.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_40_length_68803_cov_4.393963contigNODE_40_length_68803_cov_4.393963:8124..9682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704063.1
PFAMsPDZ_2,Trypsin_2
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009507,GO:0009526,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009765,GO:0009941,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0019684,GO:0030091,GO:0030163,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue8.8e-131
EggNOG OGsCOG0265@1|root,KOG1320@2759|Eukaryota
Descriptionserine-type endopeptidase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8749Gcaud8749Gracilaria caudata M_176_S67 malegeneNODE_40_length_68803_cov_4.393963 8124..9682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8749.t1Gcaud8749.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_40_length_68803_cov_4.393963 8124..9682 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8749.t1.start1Gcaud8749.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_40_length_68803_cov_4.393963 8124..8126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8749.t1.CDS1Gcaud8749.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_40_length_68803_cov_4.393963 8124..8525 +
Gcaud8749.t1.CDS2Gcaud8749.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_40_length_68803_cov_4.393963 8613..8667 +
Gcaud8749.t1.CDS3Gcaud8749.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_40_length_68803_cov_4.393963 8757..9682 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8749.t1.exon1Gcaud8749.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_40_length_68803_cov_4.393963 8124..8525 +
Gcaud8749.t1.exon2Gcaud8749.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_40_length_68803_cov_4.393963 8613..8667 +
Gcaud8749.t1.exon3Gcaud8749.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_40_length_68803_cov_4.393963 8757..9682 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8749.t1.intron1Gcaud8749.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_40_length_68803_cov_4.393963 8526..8612 +
Gcaud8749.t1.intron2Gcaud8749.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_40_length_68803_cov_4.393963 8668..8756 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8749.t1.stop1Gcaud8749.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_40_length_68803_cov_4.393963 9680..9682 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8749.t1 ID=Gcaud8749.t1|Name=Gcaud8749.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=461bp
MTAQRHSTASAFIISGRRILTNAHAVEHHTSVRLKKRYSDVRYLAKVVAI
GNECDLALLQVDDAEFWEEFEECHDSRSLLHPGPLPELQDAVHVIGYPSP
GNQISVTAGVCSRVEMQHYAHGQDELLAVQIDAAINPGNSGGPVINEQLQ
VIGIAFQSVDPSQADSVGYFIPFSVVDHFLDDIARHQRYTGFPFLGFYWQ
RMENPYLRRAYGMKSGSSGILVKWVAETVDAARVLKKGDVVTHMDGISIS
NAGTIPFRNGERIDLHYMVTSKFSDDPVTVTFQRDGKQHEELYKLSRMQE
HCLVPIHDARPPFRRQPEYVICGGLVFQSLSESFLRAVYGQNCLLDAPVP
LLELYYNGMKTQAGRAEVVLLSQILSASCTSGYETDNEPDIRVLRRLNSK
PVNSLKHLASLLDACPRDVRDLHFELDKNDIIIIDRRAACEEEREILATY
CIPAARYLGS*
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spliced messenger RNA

>Gcaud8749.t1 ID=Gcaud8749.t1|Name=Gcaud8749.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:8124..9682+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCCCAGCGTCATTCCACAGCTTCCGCGTTCATCATTTCGGGGCG
CCGTATTTTGACAAATGCACACGCCGTAGAACATCATACATCCGTGCGTT
TGAAGAAGAGGTACTCTGACGTTAGATATCTCGCAAAAGTGGTTGCGATT
GGGAATGAATGCGACCTAGCTTTGCTGCAGGTTGACGACGCGGAGTTTTG
GGAGGAGTTCGAAGAGTGTCACGATTCCAGAAGTCTTTTACACCCCGGAC
CTTTACCAGAGCTACAAGATGCTGTACATGTTATTGGTTATCCATCTCCT
GGAAACCAAATAAGCGTTACGGCTGGCGTATGTAGTAGGGTGGAAATGCA
GCATTACGCCCATGGCCAGGACGAGTTGCTGGCTGTTCAGATTGATGCGG
CGATCAACCCAGGTAACAGCGGAGGCCCAGTGATTAATGAGCAACTGCAA
GTAATCGGGATTGCTTTCCAATCAGTTGACCCCTCTCAAGCAGATTCTGT
TGGGTATTTCATTCCGTTCTCCGTCGTTGACCATTTCCTCGACGACATCG
CCCGACACCAAAGATATACGGGTTTTCCGTTTTTAGGATTTTATTGGCAA
AGGATGGAAAATCCGTATCTCCGTCGAGCTTATGGAATGAAGTCCGGCTC
ATCCGGGATCCTTGTGAAGTGGGTTGCAGAGACAGTCGATGCCGCGCGAG
TGCTTAAGAAGGGTGATGTTGTAACGCATATGGATGGGATCAGCATATCA
AACGCTGGTACAATTCCTTTTCGAAATGGGGAAAGGATCGACCTTCATTA
CATGGTGACAAGCAAGTTTTCGGACGACCCGGTTACAGTGACATTTCAAA
GGGACGGGAAACAACATGAAGAATTATACAAGCTGTCAAGGATGCAGGAA
CATTGCCTTGTTCCAATTCATGACGCTCGTCCGCCTTTCAGGCGACAACC
TGAATACGTGATTTGCGGAGGGCTCGTGTTCCAGTCTCTCAGCGAATCAT
TTTTGCGAGCTGTCTATGGACAGAATTGTCTTCTCGATGCACCAGTGCCT
TTGTTAGAGCTCTATTACAATGGAATGAAAACACAAGCAGGACGCGCCGA
AGTGGTGCTACTATCGCAAATTTTGTCTGCAAGTTGTACTTCTGGGTACG
AGACCGACAATGAACCCGACATTAGGGTACTACGGAGACTGAATTCCAAA
CCAGTTAACAGTTTGAAGCATCTGGCAAGTTTGCTGGACGCATGTCCTCG
TGATGTTCGAGATCTTCACTTCGAGCTCGACAAGAATGACATTATCATTA
TTGACAGACGTGCTGCATGTGAAGAAGAACGCGAGATACTGGCGACATAT
TGTATACCCGCCGCACGTTATTTAGGCTCCTAA
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protein sequence of Gcaud8749.t1

>Gcaud8749.t1 ID=Gcaud8749.t1|Name=Gcaud8749.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=461bp
MTAQRHSTASAFIISGRRILTNAHAVEHHTSVRLKKRYSDVRYLAKVVAI
GNECDLALLQVDDAEFWEEFEECHDSRSLLHPGPLPELQDAVHVIGYPSP
GNQISVTAGVCSRVEMQHYAHGQDELLAVQIDAAINPGNSGGPVINEQLQ
VIGIAFQSVDPSQADSVGYFIPFSVVDHFLDDIARHQRYTGFPFLGFYWQ
RMENPYLRRAYGMKSGSSGILVKWVAETVDAARVLKKGDVVTHMDGISIS
NAGTIPFRNGERIDLHYMVTSKFSDDPVTVTFQRDGKQHEELYKLSRMQE
HCLVPIHDARPPFRRQPEYVICGGLVFQSLSESFLRAVYGQNCLLDAPVP
LLELYYNGMKTQAGRAEVVLLSQILSASCTSGYETDNEPDIRVLRRLNSK
PVNSLKHLASLLDACPRDVRDLHFELDKNDIIIIDRRAACEEEREILATY
CIPAARYLGS*
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mRNA from alignment at NODE_40_length_68803_cov_4.393963:8124..9682+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8749.t1 ID=Gcaud8749.t1|Name=Gcaud8749.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1559bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:8124..9682+ (Gracilaria caudata M_176_S67 male)
ATGACAGCCCAGCGTCATTCCACAGCTTCCGCGTTCATCATTTCGGGGCG
CCGTATTTTGACAAATGCACACGCCGTAGAACATCATACATCCGTGCGTT
TGAAGAAGAGGTACTCTGACGTTAGATATCTCGCAAAAGTGGTTGCGATT
GGGAATGAATGCGACCTAGCTTTGCTGCAGGTTGACGACGCGGAGTTTTG
GGAGGAGTTCGAAGAGTGTCACGATTCCAGAAGTCTTTTACACCCCGGAC
CTTTACCAGAGCTACAAGATGCTGTACATGTTATTGGTTATCCATCTCCT
GGAAACCAAATAAGCGTTACGGCTGGCGTATGTAGTAGGGTGGAAATGCA
GCATTACGCCCATGGCCAGGACGAGTTGCTGGCTGTTCAGATTGATGCGG
CGGTACGTTTTTAGATTTCAAGTCACGTTCTTGAGACGCTCATAGTTTTA
ACACCCCTGGATAACATTTTGTCTCTGAGAACCAAACAGATCAACCCAGG
TAACAGCGGAGGCCCAGTGATTAATGAGCAACTGCAAGTAATCGGTAAGA
TTTCAAGTCTCCCAAACCAAGATCTACGGTATCGGTAATAATTTCTGGCT
GCTAACATCGCCTTCTACTCTGAATCATCACAGGGATTGCTTTCCAATCA
GTTGACCCCTCTCAAGCAGATTCTGTTGGGTATTTCATTCCGTTCTCCGT
CGTTGACCATTTCCTCGACGACATCGCCCGACACCAAAGATATACGGGTT
TTCCGTTTTTAGGATTTTATTGGCAAAGGATGGAAAATCCGTATCTCCGT
CGAGCTTATGGAATGAAGTCCGGCTCATCCGGGATCCTTGTGAAGTGGGT
TGCAGAGACAGTCGATGCCGCGCGAGTGCTTAAGAAGGGTGATGTTGTAA
CGCATATGGATGGGATCAGCATATCAAACGCTGGTACAATTCCTTTTCGA
AATGGGGAAAGGATCGACCTTCATTACATGGTGACAAGCAAGTTTTCGGA
CGACCCGGTTACAGTGACATTTCAAAGGGACGGGAAACAACATGAAGAAT
TATACAAGCTGTCAAGGATGCAGGAACATTGCCTTGTTCCAATTCATGAC
GCTCGTCCGCCTTTCAGGCGACAACCTGAATACGTGATTTGCGGAGGGCT
CGTGTTCCAGTCTCTCAGCGAATCATTTTTGCGAGCTGTCTATGGACAGA
ATTGTCTTCTCGATGCACCAGTGCCTTTGTTAGAGCTCTATTACAATGGA
ATGAAAACACAAGCAGGACGCGCCGAAGTGGTGCTACTATCGCAAATTTT
GTCTGCAAGTTGTACTTCTGGGTACGAGACCGACAATGAACCCGACATTA
GGGTACTACGGAGACTGAATTCCAAACCAGTTAACAGTTTGAAGCATCTG
GCAAGTTTGCTGGACGCATGTCCTCGTGATGTTCGAGATCTTCACTTCGA
GCTCGACAAGAATGACATTATCATTATTGACAGACGTGCTGCATGTGAAG
AAGAACGCGAGATACTGGCGACATATTGTATACCCGCCGCACGTTATTTA
GGCTCCTAA
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Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:8124..9682+

>Gcaud8749.t1 ID=Gcaud8749.t1|Name=Gcaud8749.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1383bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:8124..9682+ (Gracilaria caudata M_176_S67 male)
ATGACAGCCCAGCGTCATTCCACAGCTTCCGCGTTCATCATTTCGGGGCG
CCGTATTTTGACAAATGCACACGCCGTAGAACATCATACATCCGTGCGTT
TGAAGAAGAGGTACTCTGACGTTAGATATCTCGCAAAAGTGGTTGCGATT
GGGAATGAATGCGACCTAGCTTTGCTGCAGGTTGACGACGCGGAGTTTTG
GGAGGAGTTCGAAGAGTGTCACGATTCCAGAAGTCTTTTACACCCCGGAC
CTTTACCAGAGCTACAAGATGCTGTACATGTTATTGGTTATCCATCTCCT
GGAAACCAAATAAGCGTTACGGCTGGCGTATGTAGTAGGGTGGAAATGCA
GCATTACGCCCATGGCCAGGACGAGTTGCTGGCTGTTCAGATTGATGCGG
CGATCAACCCAGGTAACAGCGGAGGCCCAGTGATTAATGAGCAACTGCAA
GTAATCGGGATTGCTTTCCAATCAGTTGACCCCTCTCAAGCAGATTCTGT
TGGGTATTTCATTCCGTTCTCCGTCGTTGACCATTTCCTCGACGACATCG
CCCGACACCAAAGATATACGGGTTTTCCGTTTTTAGGATTTTATTGGCAA
AGGATGGAAAATCCGTATCTCCGTCGAGCTTATGGAATGAAGTCCGGCTC
ATCCGGGATCCTTGTGAAGTGGGTTGCAGAGACAGTCGATGCCGCGCGAG
TGCTTAAGAAGGGTGATGTTGTAACGCATATGGATGGGATCAGCATATCA
AACGCTGGTACAATTCCTTTTCGAAATGGGGAAAGGATCGACCTTCATTA
CATGGTGACAAGCAAGTTTTCGGACGACCCGGTTACAGTGACATTTCAAA
GGGACGGGAAACAACATGAAGAATTATACAAGCTGTCAAGGATGCAGGAA
CATTGCCTTGTTCCAATTCATGACGCTCGTCCGCCTTTCAGGCGACAACC
TGAATACGTGATTTGCGGAGGGCTCGTGTTCCAGTCTCTCAGCGAATCAT
TTTTGCGAGCTGTCTATGGACAGAATTGTCTTCTCGATGCACCAGTGCCT
TTGTTAGAGCTCTATTACAATGGAATGAAAACACAAGCAGGACGCGCCGA
AGTGGTGCTACTATCGCAAATTTTGTCTGCAAGTTGTACTTCTGGGTACG
AGACCGACAATGAACCCGACATTAGGGTACTACGGAGACTGAATTCCAAA
CCAGTTAACAGTTTGAAGCATCTGGCAAGTTTGCTGGACGCATGTCCTCG
TGATGTTCGAGATCTTCACTTCGAGCTCGACAAGAATGACATTATCATTA
TTGACAGACGTGCTGCATGTGAAGAAGAACGCGAGATACTGGCGACATAT
TGTATACCCGCCGCACGTTATTTAGGCTCCTAA
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