Gcaud8740.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8740.t1
Unique Name	Gcaud8740.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_122_length_46896_cov_4.534024	contig	NODE_122_length_46896_cov_4.534024:45099..46054 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	929562.Emtol_0619
PFAMs	AMP-binding,AMP-binding_C,PP-binding
Max annot lvl	976\|Bacteroidetes
KEGG rclass	RC00004,RC00014,RC00137
KEGG ko	ko:K01897,ko:K18660
KEGG TC	4.C.1.1
KEGG Reaction	R01280,R03383
KEGG Pathway	ko00061,ko00071,ko00280,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map00280,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG Module	M00086
Evalue	2.14e-49
EggNOG OGs	COG0318@1\|root,COG0318@2\|Bacteria,4NFPF@976\|Bacteroidetes,47NTH@768503\|Cytophagia
EC	6.2.1.3
Description	AMP-binding enzyme C-terminal domain
COG category	IQ
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8740	Gcaud8740	Gracilaria caudata M_176_S67 male	gene	NODE_122_length_46896_cov_4.534024 45099..46054 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8740.t1	Gcaud8740.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_122_length_46896_cov_4.534024 45099..46054 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8740.t1.start1	Gcaud8740.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_122_length_46896_cov_4.534024 45099..45101 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8740.t1.CDS1	Gcaud8740.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_122_length_46896_cov_4.534024 45099..45509 +
Gcaud8740.t1.CDS2	Gcaud8740.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_122_length_46896_cov_4.534024 45596..46054 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8740.t1.exon1	Gcaud8740.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_122_length_46896_cov_4.534024 45099..45509 +
Gcaud8740.t1.exon2	Gcaud8740.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_122_length_46896_cov_4.534024 45596..46054 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8740.t1.intron1	Gcaud8740.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_122_length_46896_cov_4.534024 45510..45595 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8740.t1.stop1	Gcaud8740.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_122_length_46896_cov_4.534024 46052..46054 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_122_length_46896_cov_4.534024:45099..46054+
coding sequence from alignment at NODE_122_length_46896_cov_4.534024:45099..46054+

mRNA sequence

>Gcaud8740.t1 ID=Gcaud8740.t1|Name=Gcaud8740.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=290bp
MLMYQLRKLSHAWRWSHHDRALNVLPLHQLQGLVNVVLRSVCNDASLEMN
SAFDAHSVWRCFHGESQLQPPSVFIAVPAVYKKLILYYEAASYRDQNAMR
RAAAGKRLYVCAAASRCRRPILRRGAIYRGRISWSAKAAIENAEHTGQLL
IKGPGVSTHYYNMPEKTQQAFTLDGWFSIGDVVTTGADSGYHKLLRRESA
DIIKTGGYKVSALEIEDVIRDCDGVVDGCVIGVPDDVLGQRIAAALIADG
TNDVSSVVQRHVEQILPMYKIPRQYHVMDDFPRNVLGKV*

spliced messenger RNA

>Gcaud8740.t1 ID=Gcaud8740.t1|Name=Gcaud8740.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:45099..46054+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCATGTATCAGCTGCGCAAGCTGTCGCACGCCTGGCGTTGGTCGCA
TCACGATCGCGCGCTCAACGTGCTGCCGTTGCATCAACTCCAGGGGCTCG
TCAACGTAGTGCTGAGAAGCGTGTGCAACGACGCGTCACTGGAGATGAAC
TCCGCCTTCGATGCACACTCTGTGTGGCGCTGCTTTCATGGCGAGTCGCA
ACTGCAACCGCCGTCTGTGTTCATCGCCGTGCCCGCTGTGTACAAGAAAC
TCATTCTTTATTATGAGGCGGCCTCGTATCGCGATCAGAATGCTATGCGA
CGCGCTGCGGCCGGGAAGAGATTGTATGTGTGTGCGGCAGCGAGTCGCTG
TCGAAGACCGATTTTGAGGCGTGGCGCCATATATCGGGGCAGGATATCTT
GGAGCGCTAAGGCTGCCATTGAGAATGCTGAACACACTGGTCAATTGCTC
ATCAAGGGTCCGGGAGTGTCCACACATTACTACAACATGCCGGAGAAGAC
TCAACAAGCCTTTACGCTGGACGGCTGGTTCAGTATCGGCGATGTGGTCA
CCACCGGCGCCGACTCGGGCTACCACAAGCTCCTGCGAAGGGAGAGCGCT
GACATTATCAAGACCGGCGGGTACAAAGTGTCGGCGCTGGAGATTGAGGA
TGTGATTCGCGATTGCGATGGAGTTGTGGACGGTTGCGTCATTGGCGTGC
CGGACGATGTCTTGGGGCAGCGAATTGCTGCCGCCTTGATTGCGGATGGT
ACCAACGATGTCTCGAGTGTCGTCCAACGTCACGTGGAACAAATTTTGCC
CATGTACAAGATTCCCAGACAGTACCACGTTATGGATGACTTTCCGAGAA
ACGTTTTGGGCAAGGTTTAA

protein sequence of Gcaud8740.t1

>Gcaud8740.t1 ID=Gcaud8740.t1|Name=Gcaud8740.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=290bp
MLMYQLRKLSHAWRWSHHDRALNVLPLHQLQGLVNVVLRSVCNDASLEMN
SAFDAHSVWRCFHGESQLQPPSVFIAVPAVYKKLILYYEAASYRDQNAMR
RAAAGKRLYVCAAASRCRRPILRRGAIYRGRISWSAKAAIENAEHTGQLL
IKGPGVSTHYYNMPEKTQQAFTLDGWFSIGDVVTTGADSGYHKLLRRESA
DIIKTGGYKVSALEIEDVIRDCDGVVDGCVIGVPDDVLGQRIAAALIADG
TNDVSSVVQRHVEQILPMYKIPRQYHVMDDFPRNVLGKV*

mRNA from alignment at NODE_122_length_46896_cov_4.534024:45099..46054+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8740.t1 ID=Gcaud8740.t1|Name=Gcaud8740.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=956bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:45099..46054+ (Gracilaria caudata M_176_S67 male)
ATGCTCATGTATCAGCTGCGCAAGCTGTCGCACGCCTGGCGTTGGTCGCA
TCACGATCGCGCGCTCAACGTGCTGCCGTTGCATCAACTCCAGGGGCTCG
TCAACGTAGTGCTGAGAAGCGTGTGCAACGACGCGTCACTGGAGATGAAC
TCCGCCTTCGATGCACACTCTGTGTGGCGCTGCTTTCATGGCGAGTCGCA
ACTGCAACCGCCGTCTGTGTTCATCGCCGTGCCCGCTGTGTACAAGAAAC
TCATTCTTTATTATGAGGCGGCCTCGTATCGCGATCAGAATGCTATGCGA
CGCGCTGCGGCCGGGAAGAGATTGTATGTGTGTGCGGCAGCGAGTCGCTG
TCGAAGACCGATTTTGAGGCGTGGCGCCATATATCGGGGCAGGATATCTT
GGAGCGCTAAGGTATGACCGGGACCGGTATGACGCTGATTAATCCGTACG
ACAGCCGTCGACAAGGCTTGTTGGGGCTGCCACTGCCTGGAGTGTAGGCT
GCCATTGAGAATGCTGAACACACTGGTCAATTGCTCATCAAGGGTCCGGG
AGTGTCCACACATTACTACAACATGCCGGAGAAGACTCAACAAGCCTTTA
CGCTGGACGGCTGGTTCAGTATCGGCGATGTGGTCACCACCGGCGCCGAC
TCGGGCTACCACAAGCTCCTGCGAAGGGAGAGCGCTGACATTATCAAGAC
CGGCGGGTACAAAGTGTCGGCGCTGGAGATTGAGGATGTGATTCGCGATT
GCGATGGAGTTGTGGACGGTTGCGTCATTGGCGTGCCGGACGATGTCTTG
GGGCAGCGAATTGCTGCCGCCTTGATTGCGGATGGTACCAACGATGTCTC
GAGTGTCGTCCAACGTCACGTGGAACAAATTTTGCCCATGTACAAGATTC
CCAGACAGTACCACGTTATGGATGACTTTCCGAGAAACGTTTTGGGCAAG
GTTTAA

Coding sequence (CDS) from alignment at NODE_122_length_46896_cov_4.534024:45099..46054+

>Gcaud8740.t1 ID=Gcaud8740.t1|Name=Gcaud8740.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=870bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:45099..46054+ (Gracilaria caudata M_176_S67 male)
ATGCTCATGTATCAGCTGCGCAAGCTGTCGCACGCCTGGCGTTGGTCGCA
TCACGATCGCGCGCTCAACGTGCTGCCGTTGCATCAACTCCAGGGGCTCG
TCAACGTAGTGCTGAGAAGCGTGTGCAACGACGCGTCACTGGAGATGAAC
TCCGCCTTCGATGCACACTCTGTGTGGCGCTGCTTTCATGGCGAGTCGCA
ACTGCAACCGCCGTCTGTGTTCATCGCCGTGCCCGCTGTGTACAAGAAAC
TCATTCTTTATTATGAGGCGGCCTCGTATCGCGATCAGAATGCTATGCGA
CGCGCTGCGGCCGGGAAGAGATTGTATGTGTGTGCGGCAGCGAGTCGCTG
TCGAAGACCGATTTTGAGGCGTGGCGCCATATATCGGGGCAGGATATCTT
GGAGCGCTAAGGCTGCCATTGAGAATGCTGAACACACTGGTCAATTGCTC
ATCAAGGGTCCGGGAGTGTCCACACATTACTACAACATGCCGGAGAAGAC
TCAACAAGCCTTTACGCTGGACGGCTGGTTCAGTATCGGCGATGTGGTCA
CCACCGGCGCCGACTCGGGCTACCACAAGCTCCTGCGAAGGGAGAGCGCT
GACATTATCAAGACCGGCGGGTACAAAGTGTCGGCGCTGGAGATTGAGGA
TGTGATTCGCGATTGCGATGGAGTTGTGGACGGTTGCGTCATTGGCGTGC
CGGACGATGTCTTGGGGCAGCGAATTGCTGCCGCCTTGATTGCGGATGGT
ACCAACGATGTCTCGAGTGTCGTCCAACGTCACGTGGAACAAATTTTGCC
CATGTACAAGATTCCCAGACAGTACCACGTTATGGATGACTTTCCGAGAA
ACGTTTTGGGCAAGGTTTAA