Gcaud8736.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8736.t1
Unique Name	Gcaud8736.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6454_length_1177_cov_8.614180	contig	NODE_6454_length_1177_cov_8.614180:123..1177 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8736	Gcaud8736	Gracilaria caudata M_176_S67 male	gene	NODE_6454_length_1177_cov_8.614180 123..1177 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8736.t1.CDS1	Gcaud8736.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_6454_length_1177_cov_8.614180 123..1177 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8736.t1.exon1	Gcaud8736.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_6454_length_1177_cov_8.614180 123..1177 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8736.t1	Gcaud8736.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_6454_length_1177_cov_8.614180 123..1177 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_6454_length_1177_cov_8.614180:123..1177+
coding sequence from alignment at NODE_6454_length_1177_cov_8.614180:123..1177+

mRNA sequence

>Gcaud8736.t1 ID=Gcaud8736.t1|Name=Gcaud8736.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=352bp
EFPPINLPQPECSQETTPIDITQPRRPKSQQSGSTKRKLVLDDDGSDPDK
TCRKKQRREINKRYKRRSLERAKQALHNEREAAAAWKPKRAVEINPEVGV
CFAARWICEQYCRGYTAFLGVQNGVNIHQTAEFLQMTCRTSECKAVIRFN
RLQSSGLWRLQRFVKHKNECFGRGTESTNDQSSVFCTPAYTAKQIARVVL
PELHDHPDISTKLIGSIIRAKGIYTRQPSVRHFRAVKRELNIIMERTRLE
DMAGLEGYAELLRDVGHTVQIYTCDAADMREIRLKAARFIFKQFQKSGVI
GKDEKFDKGVVDLSDIVDGKSYYSGFVFVPSVAKRFCSRGRMTTSADAAH
CX

spliced messenger RNA

>Gcaud8736.t1 ID=Gcaud8736.t1|Name=Gcaud8736.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1055bp|location=Sequence derived from alignment at NODE_6454_length_1177_cov_8.614180:123..1177+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GAGTTCCCCCCAATCAACCTTCCTCAACCGGAATGTTCGCAGGAGACCAC
GCCAATCGACATTACTCAACCGCGCAGGCCAAAGTCGCAACAATCTGGTA
GTACGAAACGTAAACTGGTACTCGACGATGACGGTTCAGACCCAGATAAA
ACGTGTCGAAAGAAGCAGCGCCGCGAAATAAATAAGCGGTACAAAAGGAG
ATCTCTTGAGCGGGCGAAACAGGCCTTGCATAACGAGCGAGAGGCAGCTG
CAGCATGGAAGCCGAAGAGGGCGGTGGAGATTAATCCTGAAGTCGGAGTT
TGTTTCGCCGCTCGTTGGATATGTGAGCAGTACTGTCGTGGTTACACTGC
CTTTCTTGGTGTACAAAATGGCGTCAATATTCATCAGACGGCAGAATTCT
TGCAAATGACTTGTAGAACTTCTGAATGCAAGGCCGTCATCAGGTTTAAT
CGTTTACAGAGCTCCGGCTTATGGAGACTGCAAAGATTCGTTAAGCACAA
GAATGAATGTTTTGGTAGGGGTACAGAATCTACAAATGACCAATCAAGTG
TTTTCTGCACTCCAGCGTACACAGCCAAACAGATTGCAAGAGTTGTGCTT
CCTGAACTACATGACCACCCTGATATCTCCACCAAGCTCATTGGCTCCAT
TATTAGAGCGAAAGGTATTTACACACGACAGCCGAGTGTCCGACATTTTA
GGGCAGTGAAACGAGAGTTGAACATCATTATGGAAAGGACGAGACTTGAA
GATATGGCGGGATTAGAAGGTTACGCTGAGTTATTGCGTGACGTTGGACA
TACTGTGCAAATTTACACATGCGACGCAGCAGATATGAGAGAAATCAGAC
TCAAGGCGGCCAGATTTATCTTCAAGCAGTTCCAGAAGTCTGGAGTGATA
GGCAAGGATGAAAAGTTTGACAAAGGTGTCGTGGATTTGTCAGACATTGT
GGATGGAAAATCTTACTACTCTGGTTTCGTGTTTGTGCCAAGTGTGGCCA
AAAGGTTTTGCTCAAGAGGGAGAATGACTACTTCCGCTGATGCTGCGCAC
TGCCA

protein sequence of Gcaud8736.t1

>Gcaud8736.t1 ID=Gcaud8736.t1|Name=Gcaud8736.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=352bp
EFPPINLPQPECSQETTPIDITQPRRPKSQQSGSTKRKLVLDDDGSDPDK
TCRKKQRREINKRYKRRSLERAKQALHNEREAAAAWKPKRAVEINPEVGV
CFAARWICEQYCRGYTAFLGVQNGVNIHQTAEFLQMTCRTSECKAVIRFN
RLQSSGLWRLQRFVKHKNECFGRGTESTNDQSSVFCTPAYTAKQIARVVL
PELHDHPDISTKLIGSIIRAKGIYTRQPSVRHFRAVKRELNIIMERTRLE
DMAGLEGYAELLRDVGHTVQIYTCDAADMREIRLKAARFIFKQFQKSGVI
GKDEKFDKGVVDLSDIVDGKSYYSGFVFVPSVAKRFCSRGRMTTSADAAH
CX

mRNA from alignment at NODE_6454_length_1177_cov_8.614180:123..1177+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8736.t1 ID=Gcaud8736.t1|Name=Gcaud8736.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1055bp|location=Sequence derived from alignment at NODE_6454_length_1177_cov_8.614180:123..1177+ (Gracilaria caudata M_176_S67 male)
GAGTTCCCCCCAATCAACCTTCCTCAACCGGAATGTTCGCAGGAGACCAC
GCCAATCGACATTACTCAACCGCGCAGGCCAAAGTCGCAACAATCTGGTA
GTACGAAACGTAAACTGGTACTCGACGATGACGGTTCAGACCCAGATAAA
ACGTGTCGAAAGAAGCAGCGCCGCGAAATAAATAAGCGGTACAAAAGGAG
ATCTCTTGAGCGGGCGAAACAGGCCTTGCATAACGAGCGAGAGGCAGCTG
CAGCATGGAAGCCGAAGAGGGCGGTGGAGATTAATCCTGAAGTCGGAGTT
TGTTTCGCCGCTCGTTGGATATGTGAGCAGTACTGTCGTGGTTACACTGC
CTTTCTTGGTGTACAAAATGGCGTCAATATTCATCAGACGGCAGAATTCT
TGCAAATGACTTGTAGAACTTCTGAATGCAAGGCCGTCATCAGGTTTAAT
CGTTTACAGAGCTCCGGCTTATGGAGACTGCAAAGATTCGTTAAGCACAA
GAATGAATGTTTTGGTAGGGGTACAGAATCTACAAATGACCAATCAAGTG
TTTTCTGCACTCCAGCGTACACAGCCAAACAGATTGCAAGAGTTGTGCTT
CCTGAACTACATGACCACCCTGATATCTCCACCAAGCTCATTGGCTCCAT
TATTAGAGCGAAAGGTATTTACACACGACAGCCGAGTGTCCGACATTTTA
GGGCAGTGAAACGAGAGTTGAACATCATTATGGAAAGGACGAGACTTGAA
GATATGGCGGGATTAGAAGGTTACGCTGAGTTATTGCGTGACGTTGGACA
TACTGTGCAAATTTACACATGCGACGCAGCAGATATGAGAGAAATCAGAC
TCAAGGCGGCCAGATTTATCTTCAAGCAGTTCCAGAAGTCTGGAGTGATA
GGCAAGGATGAAAAGTTTGACAAAGGTGTCGTGGATTTGTCAGACATTGT
GGATGGAAAATCTTACTACTCTGGTTTCGTGTTTGTGCCAAGTGTGGCCA
AAAGGTTTTGCTCAAGAGGGAGAATGACTACTTCCGCTGATGCTGCGCAC
TGCCA

Coding sequence (CDS) from alignment at NODE_6454_length_1177_cov_8.614180:123..1177+

>Gcaud8736.t1 ID=Gcaud8736.t1|Name=Gcaud8736.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1055bp|location=Sequence derived from alignment at NODE_6454_length_1177_cov_8.614180:123..1177+ (Gracilaria caudata M_176_S67 male)
GAGTTCCCCCCAATCAACCTTCCTCAACCGGAATGTTCGCAGGAGACCAC
GCCAATCGACATTACTCAACCGCGCAGGCCAAAGTCGCAACAATCTGGTA
GTACGAAACGTAAACTGGTACTCGACGATGACGGTTCAGACCCAGATAAA
ACGTGTCGAAAGAAGCAGCGCCGCGAAATAAATAAGCGGTACAAAAGGAG
ATCTCTTGAGCGGGCGAAACAGGCCTTGCATAACGAGCGAGAGGCAGCTG
CAGCATGGAAGCCGAAGAGGGCGGTGGAGATTAATCCTGAAGTCGGAGTT
TGTTTCGCCGCTCGTTGGATATGTGAGCAGTACTGTCGTGGTTACACTGC
CTTTCTTGGTGTACAAAATGGCGTCAATATTCATCAGACGGCAGAATTCT
TGCAAATGACTTGTAGAACTTCTGAATGCAAGGCCGTCATCAGGTTTAAT
CGTTTACAGAGCTCCGGCTTATGGAGACTGCAAAGATTCGTTAAGCACAA
GAATGAATGTTTTGGTAGGGGTACAGAATCTACAAATGACCAATCAAGTG
TTTTCTGCACTCCAGCGTACACAGCCAAACAGATTGCAAGAGTTGTGCTT
CCTGAACTACATGACCACCCTGATATCTCCACCAAGCTCATTGGCTCCAT
TATTAGAGCGAAAGGTATTTACACACGACAGCCGAGTGTCCGACATTTTA
GGGCAGTGAAACGAGAGTTGAACATCATTATGGAAAGGACGAGACTTGAA
GATATGGCGGGATTAGAAGGTTACGCTGAGTTATTGCGTGACGTTGGACA
TACTGTGCAAATTTACACATGCGACGCAGCAGATATGAGAGAAATCAGAC
TCAAGGCGGCCAGATTTATCTTCAAGCAGTTCCAGAAGTCTGGAGTGATA
GGCAAGGATGAAAAGTTTGACAAAGGTGTCGTGGATTTGTCAGACATTGT
GGATGGAAAATCTTACTACTCTGGTTTCGTGTTTGTGCCAAGTGTGGCCA
AAAGGTTTTGCTCAAGAGGGAGAATGACTACTTCCGCTGATGCTGCGCAC
TGCCA