Gcaud871.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud871.t1
Unique NameGcaud871.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4215_length_2456_cov_4.598732contigNODE_4215_length_2456_cov_4.598732:1616..2161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud871Gcaud871Gracilaria caudata M_176_S67 malegeneNODE_4215_length_2456_cov_4.598732 1616..2161 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud871.t1.start1Gcaud871.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4215_length_2456_cov_4.598732 1616..1618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud871.t1.CDS1Gcaud871.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4215_length_2456_cov_4.598732 1616..2161 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud871.t1.exon1Gcaud871.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4215_length_2456_cov_4.598732 1616..2161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud871.t1.stop1Gcaud871.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4215_length_2456_cov_4.598732 2159..2161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud871.t1Gcaud871.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4215_length_2456_cov_4.598732 1616..2161 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud871.t1 ID=Gcaud871.t1|Name=Gcaud871.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=182bp
MRLSVLPDVAGSVAVRQEVYESYSTESLVLPTTSRALAINFEKDVLGLGP
LKLRFPGKGEWKGEYVSFESDWGSPGLNLELKYIHQWDLKVHVSAVLSVG
TKVIKDRKIVNVIKPITLLGIPPIDLSKGMDTGRFILPTIKFGFYFEIPL
NINLDAKVEKKLSNLGSVSYSTARSEITLFA*
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spliced messenger RNA

>Gcaud871.t1 ID=Gcaud871.t1|Name=Gcaud871.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=546bp|location=Sequence derived from alignment at NODE_4215_length_2456_cov_4.598732:1616..2161+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACTTAGTGTGCTTCCAGACGTCGCTGGAAGCGTCGCTGTTCGGCA
GGAAGTGTACGAATCATATTCAACCGAGTCGCTTGTACTCCCCACAACTT
CCCGAGCTCTCGCCATCAACTTCGAGAAAGACGTTTTAGGCCTTGGGCCG
CTCAAGCTTCGATTCCCCGGGAAAGGGGAGTGGAAGGGTGAATACGTGTC
TTTTGAATCAGACTGGGGTTCGCCTGGATTGAATCTGGAGTTGAAATACA
TTCATCAGTGGGATCTGAAGGTCCATGTGAGTGCTGTTTTATCTGTAGGA
ACGAAGGTCATCAAGGACAGAAAAATTGTGAATGTGATTAAACCCATAAC
ACTCCTTGGAATTCCACCAATCGACCTTTCCAAAGGGATGGACACCGGTC
GCTTCATTTTACCAACCATAAAATTCGGATTCTACTTTGAGATACCGCTA
AATATCAATCTGGACGCCAAGGTCGAAAAGAAACTGAGCAATTTGGGATC
TGTCTCCTATTCGACAGCTCGTTCGGAAATTACGTTATTCGCTTAA
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protein sequence of Gcaud871.t1

>Gcaud871.t1 ID=Gcaud871.t1|Name=Gcaud871.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=182bp
MRLSVLPDVAGSVAVRQEVYESYSTESLVLPTTSRALAINFEKDVLGLGP
LKLRFPGKGEWKGEYVSFESDWGSPGLNLELKYIHQWDLKVHVSAVLSVG
TKVIKDRKIVNVIKPITLLGIPPIDLSKGMDTGRFILPTIKFGFYFEIPL
NINLDAKVEKKLSNLGSVSYSTARSEITLFA*
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mRNA from alignment at NODE_4215_length_2456_cov_4.598732:1616..2161+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud871.t1 ID=Gcaud871.t1|Name=Gcaud871.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=546bp|location=Sequence derived from alignment at NODE_4215_length_2456_cov_4.598732:1616..2161+ (Gracilaria caudata M_176_S67 male)
ATGAGACTTAGTGTGCTTCCAGACGTCGCTGGAAGCGTCGCTGTTCGGCA
GGAAGTGTACGAATCATATTCAACCGAGTCGCTTGTACTCCCCACAACTT
CCCGAGCTCTCGCCATCAACTTCGAGAAAGACGTTTTAGGCCTTGGGCCG
CTCAAGCTTCGATTCCCCGGGAAAGGGGAGTGGAAGGGTGAATACGTGTC
TTTTGAATCAGACTGGGGTTCGCCTGGATTGAATCTGGAGTTGAAATACA
TTCATCAGTGGGATCTGAAGGTCCATGTGAGTGCTGTTTTATCTGTAGGA
ACGAAGGTCATCAAGGACAGAAAAATTGTGAATGTGATTAAACCCATAAC
ACTCCTTGGAATTCCACCAATCGACCTTTCCAAAGGGATGGACACCGGTC
GCTTCATTTTACCAACCATAAAATTCGGATTCTACTTTGAGATACCGCTA
AATATCAATCTGGACGCCAAGGTCGAAAAGAAACTGAGCAATTTGGGATC
TGTCTCCTATTCGACAGCTCGTTCGGAAATTACGTTATTCGCTTAA
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Coding sequence (CDS) from alignment at NODE_4215_length_2456_cov_4.598732:1616..2161+

>Gcaud871.t1 ID=Gcaud871.t1|Name=Gcaud871.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=546bp|location=Sequence derived from alignment at NODE_4215_length_2456_cov_4.598732:1616..2161+ (Gracilaria caudata M_176_S67 male)
ATGAGACTTAGTGTGCTTCCAGACGTCGCTGGAAGCGTCGCTGTTCGGCA
GGAAGTGTACGAATCATATTCAACCGAGTCGCTTGTACTCCCCACAACTT
CCCGAGCTCTCGCCATCAACTTCGAGAAAGACGTTTTAGGCCTTGGGCCG
CTCAAGCTTCGATTCCCCGGGAAAGGGGAGTGGAAGGGTGAATACGTGTC
TTTTGAATCAGACTGGGGTTCGCCTGGATTGAATCTGGAGTTGAAATACA
TTCATCAGTGGGATCTGAAGGTCCATGTGAGTGCTGTTTTATCTGTAGGA
ACGAAGGTCATCAAGGACAGAAAAATTGTGAATGTGATTAAACCCATAAC
ACTCCTTGGAATTCCACCAATCGACCTTTCCAAAGGGATGGACACCGGTC
GCTTCATTTTACCAACCATAAAATTCGGATTCTACTTTGAGATACCGCTA
AATATCAATCTGGACGCCAAGGTCGAAAAGAAACTGAGCAATTTGGGATC
TGTCTCCTATTCGACAGCTCGTTCGGAAATTACGTTATTCGCTTAA
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