Gcaud8622.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8622.t1
Unique Name	Gcaud8622.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	419

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_329_length_29763_cov_4.543981	contig	NODE_329_length_29763_cov_4.543981:23715..25072 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707879.1
PFAMs	DnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09503
KEGG Pathway	ko04141,map04141
Evalue	7.76e-151
EggNOG OGs	COG0484@1\|root,KOG0712@2759\|Eukaryota
Description	heat shock protein binding
COG category	O
BRITE	ko00000,ko00001,ko03029,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8622	Gcaud8622	Gracilaria caudata M_176_S67 male	gene	NODE_329_length_29763_cov_4.543981 23715..25072 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8622.t1	Gcaud8622.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_329_length_29763_cov_4.543981 23715..25072 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8622.t1.start1	Gcaud8622.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_329_length_29763_cov_4.543981 23715..23717 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8622.t1.CDS1	Gcaud8622.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_329_length_29763_cov_4.543981 23715..23819 +
Gcaud8622.t1.CDS2	Gcaud8622.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_329_length_29763_cov_4.543981 23921..25072 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8622.t1.exon1	Gcaud8622.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_329_length_29763_cov_4.543981 23715..23819 +
Gcaud8622.t1.exon2	Gcaud8622.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_329_length_29763_cov_4.543981 23921..25072 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8622.t1.intron1	Gcaud8622.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_329_length_29763_cov_4.543981 23820..23920 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8622.t1.stop1	Gcaud8622.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_329_length_29763_cov_4.543981 25070..25072 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_329_length_29763_cov_4.543981:23715..25072+
coding sequence from alignment at NODE_329_length_29763_cov_4.543981:23715..25072+

mRNA sequence

>Gcaud8622.t1 ID=Gcaud8622.t1|Name=Gcaud8622.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=419bp
MFGGFPGMEGMGMGGMGGMGGRRRKVDNDRYYQLLGVEKDASLSQIKKAY
RKLAMTHHPDRGGDEERFKEITTAFEVLSDEEKRQLYDDYGEEGLREGGG
GPADAHDLFSAMFGGGVAARGPKKGEPVVHSLRVTLEDLYKGKTSKLAII
RNRVCKVCRGKGASRPEAVETCYVCHGRGIQVTLNQIGPGMVQQVQNTCR
TCRGMGETINERFRCATCKGDKVVKERKVLEVYVDKGMQHGQKITFTGEA
NANPGAVAGDVIVVLKQEEHDRFTRKENNLVFETEVELVDALCGVDFYIK
QLDGRLLHVRSPPGHVITPGMLKSIPDEGMPIWKNPMERGFMFVKFSVKF
PKYIASAQIHALHTVFGPGTPLPHSGDAEVEEVQMIEFEQDHIKQAQANG
SAYDEDDEEQHRVSCAQG*

spliced messenger RNA

>Gcaud8622.t1 ID=Gcaud8622.t1|Name=Gcaud8622.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:23715..25072+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGGCGGTTTTCCAGGTATGGAGGGAATGGGTATGGGCGGTATGGG
TGGTATGGGTGGCAGACGTCGTAAGGTCGATAACGACCGCTATTATCAAC
TCTTGGGCGTGGAGAAAGACGCCTCTCTCAGCCAGATCAAGAAAGCGTAC
CGGAAACTGGCAATGACTCATCATCCCGATCGAGGAGGTGATGAGGAGCG
ATTCAAGGAAATTACCACAGCTTTCGAAGTTCTCAGCGACGAGGAGAAGC
GACAGTTGTACGACGATTACGGTGAGGAGGGTCTTCGTGAAGGTGGCGGG
GGGCCCGCTGATGCTCACGACCTCTTTAGCGCCATGTTCGGTGGCGGTGT
TGCTGCAAGAGGACCGAAGAAGGGGGAACCAGTCGTGCACAGCCTTCGTG
TCACCCTGGAAGACCTGTATAAGGGCAAGACAAGCAAGCTCGCAATCATC
CGTAATAGAGTGTGCAAAGTCTGCAGGGGAAAGGGTGCCAGTCGACCTGA
AGCGGTTGAAACTTGCTACGTGTGTCATGGCCGCGGTATTCAGGTCACTT
TGAACCAAATCGGCCCGGGTATGGTCCAACAGGTTCAGAACACCTGCCGC
ACCTGCAGGGGTATGGGTGAAACTATCAATGAAAGGTTCCGATGTGCCAC
ATGCAAAGGTGATAAGGTTGTGAAGGAGAGAAAGGTTTTGGAAGTGTATG
TCGACAAGGGAATGCAACATGGACAGAAAATCACGTTTACTGGCGAAGCT
AACGCGAATCCTGGTGCTGTTGCTGGGGATGTCATTGTTGTGCTCAAGCA
AGAGGAACACGACCGTTTCACTCGAAAGGAAAACAACCTTGTCTTTGAAA
CCGAGGTTGAACTCGTCGATGCTCTCTGCGGTGTCGACTTCTACATCAAG
CAGCTGGATGGTAGACTTTTACATGTGCGTTCTCCCCCTGGTCACGTGAT
CACCCCTGGAATGCTGAAGAGTATCCCGGACGAGGGTATGCCTATCTGGA
AGAATCCAATGGAACGGGGATTCATGTTCGTCAAATTCTCCGTCAAGTTC
CCGAAATACATTGCATCTGCACAAATCCATGCTCTTCACACAGTTTTTGG
TCCCGGCACACCGCTGCCCCACTCAGGTGATGCTGAAGTCGAAGAAGTGC
AAATGATCGAATTCGAGCAGGACCACATCAAGCAGGCACAAGCCAATGGT
TCGGCATACGACGAAGATGACGAGGAGCAGCACAGAGTATCATGTGCCCA
GGGATAG

protein sequence of Gcaud8622.t1

>Gcaud8622.t1 ID=Gcaud8622.t1|Name=Gcaud8622.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=419bp
MFGGFPGMEGMGMGGMGGMGGRRRKVDNDRYYQLLGVEKDASLSQIKKAY
RKLAMTHHPDRGGDEERFKEITTAFEVLSDEEKRQLYDDYGEEGLREGGG
GPADAHDLFSAMFGGGVAARGPKKGEPVVHSLRVTLEDLYKGKTSKLAII
RNRVCKVCRGKGASRPEAVETCYVCHGRGIQVTLNQIGPGMVQQVQNTCR
TCRGMGETINERFRCATCKGDKVVKERKVLEVYVDKGMQHGQKITFTGEA
NANPGAVAGDVIVVLKQEEHDRFTRKENNLVFETEVELVDALCGVDFYIK
QLDGRLLHVRSPPGHVITPGMLKSIPDEGMPIWKNPMERGFMFVKFSVKF
PKYIASAQIHALHTVFGPGTPLPHSGDAEVEEVQMIEFEQDHIKQAQANG
SAYDEDDEEQHRVSCAQG*

mRNA from alignment at NODE_329_length_29763_cov_4.543981:23715..25072+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8622.t1 ID=Gcaud8622.t1|Name=Gcaud8622.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1358bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:23715..25072+ (Gracilaria caudata M_176_S67 male)
ATGTTCGGCGGTTTTCCAGGTATGGAGGGAATGGGTATGGGCGGTATGGG
TGGTATGGGTGGCAGACGTCGTAAGGTCGATAACGACCGCTATTATCAAC
TCTTGGTACGTTCACAGAGCTCTCTACGGTCTTCCTAGTTCGAAACTTGA
GCCCAAGCAGTTCTCTAACTGTTTCACCTCTTTGCCGCTTACGCTTCGCT
CTATAGGGCGTGGAGAAAGACGCCTCTCTCAGCCAGATCAAGAAAGCGTA
CCGGAAACTGGCAATGACTCATCATCCCGATCGAGGAGGTGATGAGGAGC
GATTCAAGGAAATTACCACAGCTTTCGAAGTTCTCAGCGACGAGGAGAAG
CGACAGTTGTACGACGATTACGGTGAGGAGGGTCTTCGTGAAGGTGGCGG
GGGGCCCGCTGATGCTCACGACCTCTTTAGCGCCATGTTCGGTGGCGGTG
TTGCTGCAAGAGGACCGAAGAAGGGGGAACCAGTCGTGCACAGCCTTCGT
GTCACCCTGGAAGACCTGTATAAGGGCAAGACAAGCAAGCTCGCAATCAT
CCGTAATAGAGTGTGCAAAGTCTGCAGGGGAAAGGGTGCCAGTCGACCTG
AAGCGGTTGAAACTTGCTACGTGTGTCATGGCCGCGGTATTCAGGTCACT
TTGAACCAAATCGGCCCGGGTATGGTCCAACAGGTTCAGAACACCTGCCG
CACCTGCAGGGGTATGGGTGAAACTATCAATGAAAGGTTCCGATGTGCCA
CATGCAAAGGTGATAAGGTTGTGAAGGAGAGAAAGGTTTTGGAAGTGTAT
GTCGACAAGGGAATGCAACATGGACAGAAAATCACGTTTACTGGCGAAGC
TAACGCGAATCCTGGTGCTGTTGCTGGGGATGTCATTGTTGTGCTCAAGC
AAGAGGAACACGACCGTTTCACTCGAAAGGAAAACAACCTTGTCTTTGAA
ACCGAGGTTGAACTCGTCGATGCTCTCTGCGGTGTCGACTTCTACATCAA
GCAGCTGGATGGTAGACTTTTACATGTGCGTTCTCCCCCTGGTCACGTGA
TCACCCCTGGAATGCTGAAGAGTATCCCGGACGAGGGTATGCCTATCTGG
AAGAATCCAATGGAACGGGGATTCATGTTCGTCAAATTCTCCGTCAAGTT
CCCGAAATACATTGCATCTGCACAAATCCATGCTCTTCACACAGTTTTTG
GTCCCGGCACACCGCTGCCCCACTCAGGTGATGCTGAAGTCGAAGAAGTG
CAAATGATCGAATTCGAGCAGGACCACATCAAGCAGGCACAAGCCAATGG
TTCGGCATACGACGAAGATGACGAGGAGCAGCACAGAGTATCATGTGCCC
AGGGATAG

Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:23715..25072+

>Gcaud8622.t1 ID=Gcaud8622.t1|Name=Gcaud8622.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1257bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:23715..25072+ (Gracilaria caudata M_176_S67 male)
ATGTTCGGCGGTTTTCCAGGTATGGAGGGAATGGGTATGGGCGGTATGGG
TGGTATGGGTGGCAGACGTCGTAAGGTCGATAACGACCGCTATTATCAAC
TCTTGGGCGTGGAGAAAGACGCCTCTCTCAGCCAGATCAAGAAAGCGTAC
CGGAAACTGGCAATGACTCATCATCCCGATCGAGGAGGTGATGAGGAGCG
ATTCAAGGAAATTACCACAGCTTTCGAAGTTCTCAGCGACGAGGAGAAGC
GACAGTTGTACGACGATTACGGTGAGGAGGGTCTTCGTGAAGGTGGCGGG
GGGCCCGCTGATGCTCACGACCTCTTTAGCGCCATGTTCGGTGGCGGTGT
TGCTGCAAGAGGACCGAAGAAGGGGGAACCAGTCGTGCACAGCCTTCGTG
TCACCCTGGAAGACCTGTATAAGGGCAAGACAAGCAAGCTCGCAATCATC
CGTAATAGAGTGTGCAAAGTCTGCAGGGGAAAGGGTGCCAGTCGACCTGA
AGCGGTTGAAACTTGCTACGTGTGTCATGGCCGCGGTATTCAGGTCACTT
TGAACCAAATCGGCCCGGGTATGGTCCAACAGGTTCAGAACACCTGCCGC
ACCTGCAGGGGTATGGGTGAAACTATCAATGAAAGGTTCCGATGTGCCAC
ATGCAAAGGTGATAAGGTTGTGAAGGAGAGAAAGGTTTTGGAAGTGTATG
TCGACAAGGGAATGCAACATGGACAGAAAATCACGTTTACTGGCGAAGCT
AACGCGAATCCTGGTGCTGTTGCTGGGGATGTCATTGTTGTGCTCAAGCA
AGAGGAACACGACCGTTTCACTCGAAAGGAAAACAACCTTGTCTTTGAAA
CCGAGGTTGAACTCGTCGATGCTCTCTGCGGTGTCGACTTCTACATCAAG
CAGCTGGATGGTAGACTTTTACATGTGCGTTCTCCCCCTGGTCACGTGAT
CACCCCTGGAATGCTGAAGAGTATCCCGGACGAGGGTATGCCTATCTGGA
AGAATCCAATGGAACGGGGATTCATGTTCGTCAAATTCTCCGTCAAGTTC
CCGAAATACATTGCATCTGCACAAATCCATGCTCTTCACACAGTTTTTGG
TCCCGGCACACCGCTGCCCCACTCAGGTGATGCTGAAGTCGAAGAAGTGC
AAATGATCGAATTCGAGCAGGACCACATCAAGCAGGCACAAGCCAATGGT
TCGGCATACGACGAAGATGACGAGGAGCAGCACAGAGTATCATGTGCCCA
GGGATAG