Gcaud8621.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8621.t1
Unique Name	Gcaud8621.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_329_length_29763_cov_4.543981	contig	NODE_329_length_29763_cov_4.543981:21449..22975 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	225117.XP_009334193.1
PFAMs	Prp19,U-box,WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10599
KEGG Pathway	ko03040,ko04120,map03040,map04120
KEGG Module	M00353,M00355
GOs	GO:0000151,GO:0000209,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005730,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008380,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0031461,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0034622,GO:0034641,GO:0036211,GO:0042221,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0050896,GO:0051704,GO:0051707,GO:0061630,GO:0061659,GO:0065003,GO:0070013,GO:0070534,GO:0070647,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080008,GO:0090304,GO:0098542,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990234,GO:1990904
Evalue	9.49e-40
EggNOG OGs	KOG0289@1\|root,KOG0289@2759\|Eukaryota,37QEM@33090\|Viridiplantae,3GCEA@35493\|Streptophyta,4JGGE@91835\|fabids
EC	2.3.2.27
Description	U-box domain-containing protein
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03041,ko03400,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8621	Gcaud8621	Gracilaria caudata M_176_S67 male	gene	NODE_329_length_29763_cov_4.543981 21449..22975 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8621.t1.start1	Gcaud8621.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_329_length_29763_cov_4.543981 21449..21451 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8621.t1.CDS1	Gcaud8621.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_329_length_29763_cov_4.543981 21449..22975 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8621.t1.exon1	Gcaud8621.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_329_length_29763_cov_4.543981 21449..22975 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8621.t1.stop1	Gcaud8621.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_329_length_29763_cov_4.543981 22973..22975 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8621.t1	Gcaud8621.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_329_length_29763_cov_4.543981 21449..22975 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_329_length_29763_cov_4.543981:21449..22975+
coding sequence from alignment at NODE_329_length_29763_cov_4.543981:21449..22975+

mRNA sequence

>Gcaud8621.t1 ID=Gcaud8621.t1|Name=Gcaud8621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=509bp
MYCALSGNIPKEPVVSVKSGHLFERTLIEKQLAVNGNKCPETGEPLFSSD
LLPVKNGEFITPLPPEKSSMPQVLDHVRAEWDRLTLELHTAQKQLHQTRQ
ELATALYRCDASARVIAKLEKERDELRAAREAATANGDTEQADEHANGAE
VLRAQRKKPANEGEEDNEQTEKNDAEPETQNCNDQKERGVVTLPDGIISQ
AQKLAIELQETRKSRKSSAPKSSVMSSFVEIGRTAVDGTDVELRAVCVNG
GKAIVGCSNGKLHVIEQDMKVSHSEEAHSNGVSAMYWDEKIFTGGEDGVV
KVWDDEMNCKAIFDGKGAVQDIERHPLKSVMYCSRADGFELRNVEDGVVI
GSAKVDNECGAIHPDGLLLATGGKKGLRMWDFSSLKQVAELQAEGVIQVA
MSEKGYYMVSIGTEEALVWDLRKQAVVGSVGTHGVCGVGLDEFGEYGCVV
GADGLNVFAVKKKAKTLARIEAKAACAERLGVAWGAQSSFVVIGGSDGVL
RKFGAAAS*

spliced messenger RNA

>Gcaud8621.t1 ID=Gcaud8621.t1|Name=Gcaud8621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:21449..22975+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTGCGCTCTCTCCGGAAACATACCAAAGGAACCAGTGGTTTCGGT
GAAAAGCGGTCATCTATTCGAACGGACTTTAATAGAAAAACAGCTGGCTG
TAAACGGCAACAAGTGCCCTGAAACGGGTGAACCCCTTTTTAGTTCCGAC
CTGCTTCCTGTCAAAAATGGCGAATTCATCACCCCTCTACCACCAGAGAA
AAGTTCAATGCCACAGGTGTTGGATCACGTGCGAGCCGAGTGGGATCGAT
TGACGCTAGAACTGCACACCGCACAAAAACAGCTGCATCAAACCAGGCAA
GAACTTGCAACGGCGTTGTATAGATGTGACGCCAGTGCTCGTGTGATTGC
GAAGTTGGAAAAGGAGCGTGACGAGCTGAGGGCGGCTCGTGAAGCTGCGA
CTGCGAATGGGGATACGGAGCAAGCAGACGAACACGCCAATGGAGCAGAA
GTACTTCGAGCGCAGCGCAAAAAGCCAGCGAATGAGGGAGAAGAAGACAA
CGAACAAACCGAGAAGAATGACGCTGAACCAGAAACACAAAACTGTAACG
ATCAAAAAGAAAGAGGGGTCGTTACACTGCCGGACGGCATTATAAGTCAG
GCTCAGAAACTAGCCATAGAGCTACAGGAGACACGTAAATCGCGAAAGAG
TAGCGCTCCTAAAAGCAGTGTTATGTCATCATTCGTAGAAATCGGGCGAA
CAGCGGTAGATGGAACCGACGTAGAACTGAGAGCAGTTTGTGTAAATGGA
GGAAAGGCAATTGTGGGATGCAGTAATGGAAAATTGCATGTCATTGAACA
GGATATGAAAGTATCACATTCCGAAGAGGCGCATTCCAACGGCGTTTCGG
CGATGTATTGGGATGAAAAAATCTTCACTGGAGGTGAAGATGGGGTGGTT
AAGGTTTGGGACGATGAAATGAATTGCAAAGCCATTTTTGATGGAAAGGG
AGCTGTCCAAGATATTGAGCGTCATCCGCTAAAGAGTGTCATGTACTGCA
GTCGTGCGGATGGGTTTGAACTGCGTAACGTTGAAGATGGAGTCGTCATC
GGGAGCGCAAAAGTTGATAATGAGTGCGGAGCAATTCACCCAGATGGACT
TCTGTTGGCAACAGGAGGCAAGAAAGGACTGCGGATGTGGGATTTTTCGA
GCTTGAAACAGGTGGCTGAACTACAGGCCGAGGGTGTAATACAAGTAGCA
ATGAGCGAAAAGGGGTACTACATGGTGAGCATTGGGACCGAGGAAGCGCT
TGTTTGGGACTTGCGCAAACAGGCTGTTGTTGGTAGCGTCGGCACGCACG
GCGTCTGTGGAGTGGGGCTCGATGAATTCGGAGAGTACGGTTGTGTAGTA
GGCGCTGATGGCCTGAATGTGTTTGCTGTGAAGAAGAAGGCTAAGACGCT
GGCAAGAATCGAGGCGAAGGCCGCGTGCGCCGAGCGGCTGGGTGTCGCGT
GGGGGGCGCAGTCGTCATTTGTGGTAATCGGGGGAAGCGACGGCGTGTTG
CGCAAGTTTGGCGCAGCTGCATCATGA

protein sequence of Gcaud8621.t1

>Gcaud8621.t1 ID=Gcaud8621.t1|Name=Gcaud8621.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=509bp
MYCALSGNIPKEPVVSVKSGHLFERTLIEKQLAVNGNKCPETGEPLFSSD
LLPVKNGEFITPLPPEKSSMPQVLDHVRAEWDRLTLELHTAQKQLHQTRQ
ELATALYRCDASARVIAKLEKERDELRAAREAATANGDTEQADEHANGAE
VLRAQRKKPANEGEEDNEQTEKNDAEPETQNCNDQKERGVVTLPDGIISQ
AQKLAIELQETRKSRKSSAPKSSVMSSFVEIGRTAVDGTDVELRAVCVNG
GKAIVGCSNGKLHVIEQDMKVSHSEEAHSNGVSAMYWDEKIFTGGEDGVV
KVWDDEMNCKAIFDGKGAVQDIERHPLKSVMYCSRADGFELRNVEDGVVI
GSAKVDNECGAIHPDGLLLATGGKKGLRMWDFSSLKQVAELQAEGVIQVA
MSEKGYYMVSIGTEEALVWDLRKQAVVGSVGTHGVCGVGLDEFGEYGCVV
GADGLNVFAVKKKAKTLARIEAKAACAERLGVAWGAQSSFVVIGGSDGVL
RKFGAAAS*

mRNA from alignment at NODE_329_length_29763_cov_4.543981:21449..22975+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8621.t1 ID=Gcaud8621.t1|Name=Gcaud8621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:21449..22975+ (Gracilaria caudata M_176_S67 male)
ATGTACTGCGCTCTCTCCGGAAACATACCAAAGGAACCAGTGGTTTCGGT
GAAAAGCGGTCATCTATTCGAACGGACTTTAATAGAAAAACAGCTGGCTG
TAAACGGCAACAAGTGCCCTGAAACGGGTGAACCCCTTTTTAGTTCCGAC
CTGCTTCCTGTCAAAAATGGCGAATTCATCACCCCTCTACCACCAGAGAA
AAGTTCAATGCCACAGGTGTTGGATCACGTGCGAGCCGAGTGGGATCGAT
TGACGCTAGAACTGCACACCGCACAAAAACAGCTGCATCAAACCAGGCAA
GAACTTGCAACGGCGTTGTATAGATGTGACGCCAGTGCTCGTGTGATTGC
GAAGTTGGAAAAGGAGCGTGACGAGCTGAGGGCGGCTCGTGAAGCTGCGA
CTGCGAATGGGGATACGGAGCAAGCAGACGAACACGCCAATGGAGCAGAA
GTACTTCGAGCGCAGCGCAAAAAGCCAGCGAATGAGGGAGAAGAAGACAA
CGAACAAACCGAGAAGAATGACGCTGAACCAGAAACACAAAACTGTAACG
ATCAAAAAGAAAGAGGGGTCGTTACACTGCCGGACGGCATTATAAGTCAG
GCTCAGAAACTAGCCATAGAGCTACAGGAGACACGTAAATCGCGAAAGAG
TAGCGCTCCTAAAAGCAGTGTTATGTCATCATTCGTAGAAATCGGGCGAA
CAGCGGTAGATGGAACCGACGTAGAACTGAGAGCAGTTTGTGTAAATGGA
GGAAAGGCAATTGTGGGATGCAGTAATGGAAAATTGCATGTCATTGAACA
GGATATGAAAGTATCACATTCCGAAGAGGCGCATTCCAACGGCGTTTCGG
CGATGTATTGGGATGAAAAAATCTTCACTGGAGGTGAAGATGGGGTGGTT
AAGGTTTGGGACGATGAAATGAATTGCAAAGCCATTTTTGATGGAAAGGG
AGCTGTCCAAGATATTGAGCGTCATCCGCTAAAGAGTGTCATGTACTGCA
GTCGTGCGGATGGGTTTGAACTGCGTAACGTTGAAGATGGAGTCGTCATC
GGGAGCGCAAAAGTTGATAATGAGTGCGGAGCAATTCACCCAGATGGACT
TCTGTTGGCAACAGGAGGCAAGAAAGGACTGCGGATGTGGGATTTTTCGA
GCTTGAAACAGGTGGCTGAACTACAGGCCGAGGGTGTAATACAAGTAGCA
ATGAGCGAAAAGGGGTACTACATGGTGAGCATTGGGACCGAGGAAGCGCT
TGTTTGGGACTTGCGCAAACAGGCTGTTGTTGGTAGCGTCGGCACGCACG
GCGTCTGTGGAGTGGGGCTCGATGAATTCGGAGAGTACGGTTGTGTAGTA
GGCGCTGATGGCCTGAATGTGTTTGCTGTGAAGAAGAAGGCTAAGACGCT
GGCAAGAATCGAGGCGAAGGCCGCGTGCGCCGAGCGGCTGGGTGTCGCGT
GGGGGGCGCAGTCGTCATTTGTGGTAATCGGGGGAAGCGACGGCGTGTTG
CGCAAGTTTGGCGCAGCTGCATCATGA

Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:21449..22975+

>Gcaud8621.t1 ID=Gcaud8621.t1|Name=Gcaud8621.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1527bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:21449..22975+ (Gracilaria caudata M_176_S67 male)
ATGTACTGCGCTCTCTCCGGAAACATACCAAAGGAACCAGTGGTTTCGGT
GAAAAGCGGTCATCTATTCGAACGGACTTTAATAGAAAAACAGCTGGCTG
TAAACGGCAACAAGTGCCCTGAAACGGGTGAACCCCTTTTTAGTTCCGAC
CTGCTTCCTGTCAAAAATGGCGAATTCATCACCCCTCTACCACCAGAGAA
AAGTTCAATGCCACAGGTGTTGGATCACGTGCGAGCCGAGTGGGATCGAT
TGACGCTAGAACTGCACACCGCACAAAAACAGCTGCATCAAACCAGGCAA
GAACTTGCAACGGCGTTGTATAGATGTGACGCCAGTGCTCGTGTGATTGC
GAAGTTGGAAAAGGAGCGTGACGAGCTGAGGGCGGCTCGTGAAGCTGCGA
CTGCGAATGGGGATACGGAGCAAGCAGACGAACACGCCAATGGAGCAGAA
GTACTTCGAGCGCAGCGCAAAAAGCCAGCGAATGAGGGAGAAGAAGACAA
CGAACAAACCGAGAAGAATGACGCTGAACCAGAAACACAAAACTGTAACG
ATCAAAAAGAAAGAGGGGTCGTTACACTGCCGGACGGCATTATAAGTCAG
GCTCAGAAACTAGCCATAGAGCTACAGGAGACACGTAAATCGCGAAAGAG
TAGCGCTCCTAAAAGCAGTGTTATGTCATCATTCGTAGAAATCGGGCGAA
CAGCGGTAGATGGAACCGACGTAGAACTGAGAGCAGTTTGTGTAAATGGA
GGAAAGGCAATTGTGGGATGCAGTAATGGAAAATTGCATGTCATTGAACA
GGATATGAAAGTATCACATTCCGAAGAGGCGCATTCCAACGGCGTTTCGG
CGATGTATTGGGATGAAAAAATCTTCACTGGAGGTGAAGATGGGGTGGTT
AAGGTTTGGGACGATGAAATGAATTGCAAAGCCATTTTTGATGGAAAGGG
AGCTGTCCAAGATATTGAGCGTCATCCGCTAAAGAGTGTCATGTACTGCA
GTCGTGCGGATGGGTTTGAACTGCGTAACGTTGAAGATGGAGTCGTCATC
GGGAGCGCAAAAGTTGATAATGAGTGCGGAGCAATTCACCCAGATGGACT
TCTGTTGGCAACAGGAGGCAAGAAAGGACTGCGGATGTGGGATTTTTCGA
GCTTGAAACAGGTGGCTGAACTACAGGCCGAGGGTGTAATACAAGTAGCA
ATGAGCGAAAAGGGGTACTACATGGTGAGCATTGGGACCGAGGAAGCGCT
TGTTTGGGACTTGCGCAAACAGGCTGTTGTTGGTAGCGTCGGCACGCACG
GCGTCTGTGGAGTGGGGCTCGATGAATTCGGAGAGTACGGTTGTGTAGTA
GGCGCTGATGGCCTGAATGTGTTTGCTGTGAAGAAGAAGGCTAAGACGCT
GGCAAGAATCGAGGCGAAGGCCGCGTGCGCCGAGCGGCTGGGTGTCGCGT
GGGGGGCGCAGTCGTCATTTGTGGTAATCGGGGGAAGCGACGGCGTGTTG
CGCAAGTTTGGCGCAGCTGCATCATGA