Gcaud8615.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8615.t1
Unique Name	Gcaud8615.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	292

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_329_length_29763_cov_4.543981	contig	NODE_329_length_29763_cov_4.543981:11071..11946 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705797.1
PFAMs	peroxidase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00092
KEGG ko	ko:K00434
KEGG Reaction	R00644
KEGG Pathway	ko00053,ko00480,map00053,map00480
Evalue	1.08e-111
EggNOG OGs	COG0685@1\|root,2QR1E@2759\|Eukaryota
EC	1.11.1.11
Description	cytochrome-c peroxidase activity
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8615	Gcaud8615	Gracilaria caudata M_176_S67 male	gene	NODE_329_length_29763_cov_4.543981 11071..11946 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8615.t1.start1	Gcaud8615.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_329_length_29763_cov_4.543981 11071..11073 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8615.t1.CDS1	Gcaud8615.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_329_length_29763_cov_4.543981 11071..11946 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8615.t1.exon1	Gcaud8615.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_329_length_29763_cov_4.543981 11071..11946 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8615.t1.stop1	Gcaud8615.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_329_length_29763_cov_4.543981 11944..11946 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8615.t1	Gcaud8615.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_329_length_29763_cov_4.543981 11071..11946 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_329_length_29763_cov_4.543981:11071..11946+
coding sequence from alignment at NODE_329_length_29763_cov_4.543981:11071..11946+

mRNA sequence

>Gcaud8615.t1 ID=Gcaud8615.t1|Name=Gcaud8615.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=292bp
MNAFVSPCAALRAISSPSSVSAVSARSTSFFSRPTSFRARVAKSGYRSFA
VRASLEEDVRTALYKLYEQTPCMPIMVRLAWHDAGTYSAAENTGGANASI
RYTPEKSHDANNGLNIAMDLLEPIKEQYPSISYADLYQLASVAAIEFAGG
PKIPFRMGRNDASEADCTPDGRLPDATKRMGHLRDIFYRMGFNDAEITTL
SGAHTLGRAHPERSGFDGPWTKVPVVFDNMYYVEILKDEPDPDLLRLASD
MALLEQPETKALCEKYAADQDAFFEDYKAAHQKLSELGCFQ*

spliced messenger RNA

>Gcaud8615.t1 ID=Gcaud8615.t1|Name=Gcaud8615.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=876bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:11071..11946+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCCTTCGTGTCTCCCTGCGCTGCGCTGCGCGCCATCTCATCTCC
ATCTTCTGTGTCCGCCGTGAGCGCCAGAAGCACCTCGTTCTTTTCGCGAC
CGACGTCGTTTAGAGCGCGTGTTGCCAAATCGGGCTACCGTTCTTTCGCC
GTTCGAGCCTCGCTCGAAGAGGATGTCCGTACAGCACTTTACAAGCTTTA
TGAACAGACGCCGTGCATGCCCATTATGGTTCGTCTGGCGTGGCATGACG
CAGGCACATACAGTGCGGCTGAAAACACCGGCGGAGCAAACGCTTCAATT
CGCTACACTCCCGAGAAATCACATGATGCGAACAATGGTCTCAACATTGC
AATGGATCTTCTGGAGCCCATCAAGGAACAATATCCGAGCATTTCTTACG
CCGATCTTTACCAACTGGCTAGTGTGGCAGCGATCGAGTTTGCTGGAGGT
CCTAAGATTCCGTTCCGCATGGGTAGAAACGATGCCAGCGAAGCGGATTG
TACGCCAGATGGAAGGCTTCCAGACGCAACTAAGAGAATGGGTCATCTAC
GGGACATCTTCTACCGCATGGGTTTCAATGACGCCGAGATCACTACTCTG
AGTGGGGCTCATACTTTGGGACGTGCGCATCCTGAAAGATCTGGGTTTGA
TGGACCATGGACAAAGGTTCCGGTGGTATTTGATAACATGTATTATGTGG
AAATCTTGAAGGATGAACCTGACCCTGACCTGCTGCGTCTTGCGAGTGAC
ATGGCGCTGCTGGAACAGCCGGAAACAAAGGCGTTATGTGAGAAGTACGC
AGCGGATCAGGACGCTTTCTTTGAGGACTACAAGGCGGCACACCAAAAAC
TCAGTGAACTTGGATGCTTTCAGTAG

protein sequence of Gcaud8615.t1

>Gcaud8615.t1 ID=Gcaud8615.t1|Name=Gcaud8615.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=292bp
MNAFVSPCAALRAISSPSSVSAVSARSTSFFSRPTSFRARVAKSGYRSFA
VRASLEEDVRTALYKLYEQTPCMPIMVRLAWHDAGTYSAAENTGGANASI
RYTPEKSHDANNGLNIAMDLLEPIKEQYPSISYADLYQLASVAAIEFAGG
PKIPFRMGRNDASEADCTPDGRLPDATKRMGHLRDIFYRMGFNDAEITTL
SGAHTLGRAHPERSGFDGPWTKVPVVFDNMYYVEILKDEPDPDLLRLASD
MALLEQPETKALCEKYAADQDAFFEDYKAAHQKLSELGCFQ*

mRNA from alignment at NODE_329_length_29763_cov_4.543981:11071..11946+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8615.t1 ID=Gcaud8615.t1|Name=Gcaud8615.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=876bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:11071..11946+ (Gracilaria caudata M_176_S67 male)
ATGAACGCCTTCGTGTCTCCCTGCGCTGCGCTGCGCGCCATCTCATCTCC
ATCTTCTGTGTCCGCCGTGAGCGCCAGAAGCACCTCGTTCTTTTCGCGAC
CGACGTCGTTTAGAGCGCGTGTTGCCAAATCGGGCTACCGTTCTTTCGCC
GTTCGAGCCTCGCTCGAAGAGGATGTCCGTACAGCACTTTACAAGCTTTA
TGAACAGACGCCGTGCATGCCCATTATGGTTCGTCTGGCGTGGCATGACG
CAGGCACATACAGTGCGGCTGAAAACACCGGCGGAGCAAACGCTTCAATT
CGCTACACTCCCGAGAAATCACATGATGCGAACAATGGTCTCAACATTGC
AATGGATCTTCTGGAGCCCATCAAGGAACAATATCCGAGCATTTCTTACG
CCGATCTTTACCAACTGGCTAGTGTGGCAGCGATCGAGTTTGCTGGAGGT
CCTAAGATTCCGTTCCGCATGGGTAGAAACGATGCCAGCGAAGCGGATTG
TACGCCAGATGGAAGGCTTCCAGACGCAACTAAGAGAATGGGTCATCTAC
GGGACATCTTCTACCGCATGGGTTTCAATGACGCCGAGATCACTACTCTG
AGTGGGGCTCATACTTTGGGACGTGCGCATCCTGAAAGATCTGGGTTTGA
TGGACCATGGACAAAGGTTCCGGTGGTATTTGATAACATGTATTATGTGG
AAATCTTGAAGGATGAACCTGACCCTGACCTGCTGCGTCTTGCGAGTGAC
ATGGCGCTGCTGGAACAGCCGGAAACAAAGGCGTTATGTGAGAAGTACGC
AGCGGATCAGGACGCTTTCTTTGAGGACTACAAGGCGGCACACCAAAAAC
TCAGTGAACTTGGATGCTTTCAGTAG

Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:11071..11946+

>Gcaud8615.t1 ID=Gcaud8615.t1|Name=Gcaud8615.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=876bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:11071..11946+ (Gracilaria caudata M_176_S67 male)
ATGAACGCCTTCGTGTCTCCCTGCGCTGCGCTGCGCGCCATCTCATCTCC
ATCTTCTGTGTCCGCCGTGAGCGCCAGAAGCACCTCGTTCTTTTCGCGAC
CGACGTCGTTTAGAGCGCGTGTTGCCAAATCGGGCTACCGTTCTTTCGCC
GTTCGAGCCTCGCTCGAAGAGGATGTCCGTACAGCACTTTACAAGCTTTA
TGAACAGACGCCGTGCATGCCCATTATGGTTCGTCTGGCGTGGCATGACG
CAGGCACATACAGTGCGGCTGAAAACACCGGCGGAGCAAACGCTTCAATT
CGCTACACTCCCGAGAAATCACATGATGCGAACAATGGTCTCAACATTGC
AATGGATCTTCTGGAGCCCATCAAGGAACAATATCCGAGCATTTCTTACG
CCGATCTTTACCAACTGGCTAGTGTGGCAGCGATCGAGTTTGCTGGAGGT
CCTAAGATTCCGTTCCGCATGGGTAGAAACGATGCCAGCGAAGCGGATTG
TACGCCAGATGGAAGGCTTCCAGACGCAACTAAGAGAATGGGTCATCTAC
GGGACATCTTCTACCGCATGGGTTTCAATGACGCCGAGATCACTACTCTG
AGTGGGGCTCATACTTTGGGACGTGCGCATCCTGAAAGATCTGGGTTTGA
TGGACCATGGACAAAGGTTCCGGTGGTATTTGATAACATGTATTATGTGG
AAATCTTGAAGGATGAACCTGACCCTGACCTGCTGCGTCTTGCGAGTGAC
ATGGCGCTGCTGGAACAGCCGGAAACAAAGGCGTTATGTGAGAAGTACGC
AGCGGATCAGGACGCTTTCTTTGAGGACTACAAGGCGGCACACCAAAAAC
TCAGTGAACTTGGATGCTTTCAGTAG