Gcaud8614.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8614.t1
Unique Name	Gcaud8614.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	360

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_329_length_29763_cov_4.543981	contig	NODE_329_length_29763_cov_4.543981:8800..9879 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8614	Gcaud8614	Gracilaria caudata M_176_S67 male	gene	NODE_329_length_29763_cov_4.543981 8800..9879 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8614.t1.start1	Gcaud8614.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_329_length_29763_cov_4.543981 8800..8802 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8614.t1.CDS1	Gcaud8614.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_329_length_29763_cov_4.543981 8800..9879 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8614.t1.exon1	Gcaud8614.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_329_length_29763_cov_4.543981 8800..9879 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8614.t1.stop1	Gcaud8614.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_329_length_29763_cov_4.543981 9877..9879 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8614.t1	Gcaud8614.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_329_length_29763_cov_4.543981 8800..9879 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_329_length_29763_cov_4.543981:8800..9879+
coding sequence from alignment at NODE_329_length_29763_cov_4.543981:8800..9879+

mRNA sequence

>Gcaud8614.t1 ID=Gcaud8614.t1|Name=Gcaud8614.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=360bp
MLAVKDGTVDASADVEDNLYYWKDQLYCTVPEYQVTSIEDKNHIFKCLRA
AHGVGLIESPEVYVQAIHIMDSVRKEVLVLKKAGIKLLERVLALEANLED
LRAAFQRYRERQLYSNLVGIAVQLIPIAGGAMAKIILAGAEIAEGLAAGE
VVEYVLSFAAGLLEDENFSKLPPSRQTEVKTILHEYGYTTDDIRLLLHSC
VNIGDSDAEIALGARATEDGRPAHCAQIQVAARDERESCNSESEGCEADN
IEESGQPVHCKPSLTTNDGFSETWTRHILGCRNTEEAKRNGMAACLVEFL
ENEDITISALKARSSAELNTLKDAAILAVQQKLGIQMRIGQKLRLREFLD
DFCKEGVVE*

spliced messenger RNA

>Gcaud8614.t1 ID=Gcaud8614.t1|Name=Gcaud8614.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:8800..9879+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCAGTGAAGGATGGAACTGTAGATGCCTCTGCTGATGTAGAGGA
TAATTTATACTACTGGAAAGATCAACTGTACTGCACTGTTCCAGAGTATC
AAGTGACAAGCATCGAAGACAAGAATCATATCTTCAAGTGTCTACGTGCA
GCCCATGGAGTGGGACTCATTGAGTCGCCGGAGGTTTATGTACAGGCAAT
TCACATCATGGATTCAGTGCGAAAGGAAGTACTCGTATTGAAAAAGGCAG
GCATAAAGCTACTGGAACGTGTTCTGGCACTTGAAGCAAACTTAGAGGAC
CTCAGAGCTGCTTTTCAGAGGTACAGAGAACGGCAATTGTACTCTAATTT
GGTTGGTATTGCAGTACAACTTATTCCAATAGCTGGGGGAGCTATGGCGA
AGATTATTCTTGCAGGTGCCGAGATTGCCGAAGGATTAGCTGCTGGAGAA
GTCGTCGAGTACGTGTTATCATTCGCAGCTGGGTTACTTGAAGACGAGAA
TTTTTCGAAGTTACCGCCAAGCAGACAGACGGAAGTCAAGACGATACTCC
ACGAATACGGATATACAACAGATGATATTCGATTACTTTTGCACAGCTGC
GTGAATATAGGAGACTCAGATGCTGAAATTGCACTCGGTGCGCGGGCAAC
CGAAGATGGAAGGCCAGCGCATTGTGCGCAAATCCAAGTAGCCGCCCGTG
ATGAGCGTGAATCTTGCAACAGCGAAAGTGAGGGTTGCGAGGCAGATAAC
ATTGAAGAAAGCGGCCAACCAGTACATTGCAAGCCCTCACTTACGACAAA
CGACGGCTTTTCAGAGACTTGGACAAGACACATCTTGGGATGCAGAAATA
CAGAGGAAGCAAAACGAAATGGAATGGCGGCATGCTTGGTGGAGTTCCTG
GAGAATGAAGACATTACGATTAGTGCACTGAAAGCGCGATCATCAGCTGA
ACTGAATACGCTGAAGGATGCCGCGATATTGGCTGTACAACAAAAGCTGG
GGATTCAAATGAGAATCGGACAAAAACTTAGATTGAGGGAGTTCTTGGAT
GACTTTTGCAAAGAAGGAGTTGTGGAGTAA

protein sequence of Gcaud8614.t1

>Gcaud8614.t1 ID=Gcaud8614.t1|Name=Gcaud8614.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=360bp
MLAVKDGTVDASADVEDNLYYWKDQLYCTVPEYQVTSIEDKNHIFKCLRA
AHGVGLIESPEVYVQAIHIMDSVRKEVLVLKKAGIKLLERVLALEANLED
LRAAFQRYRERQLYSNLVGIAVQLIPIAGGAMAKIILAGAEIAEGLAAGE
VVEYVLSFAAGLLEDENFSKLPPSRQTEVKTILHEYGYTTDDIRLLLHSC
VNIGDSDAEIALGARATEDGRPAHCAQIQVAARDERESCNSESEGCEADN
IEESGQPVHCKPSLTTNDGFSETWTRHILGCRNTEEAKRNGMAACLVEFL
ENEDITISALKARSSAELNTLKDAAILAVQQKLGIQMRIGQKLRLREFLD
DFCKEGVVE*

mRNA from alignment at NODE_329_length_29763_cov_4.543981:8800..9879+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8614.t1 ID=Gcaud8614.t1|Name=Gcaud8614.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:8800..9879+ (Gracilaria caudata M_176_S67 male)
ATGCTGGCAGTGAAGGATGGAACTGTAGATGCCTCTGCTGATGTAGAGGA
TAATTTATACTACTGGAAAGATCAACTGTACTGCACTGTTCCAGAGTATC
AAGTGACAAGCATCGAAGACAAGAATCATATCTTCAAGTGTCTACGTGCA
GCCCATGGAGTGGGACTCATTGAGTCGCCGGAGGTTTATGTACAGGCAAT
TCACATCATGGATTCAGTGCGAAAGGAAGTACTCGTATTGAAAAAGGCAG
GCATAAAGCTACTGGAACGTGTTCTGGCACTTGAAGCAAACTTAGAGGAC
CTCAGAGCTGCTTTTCAGAGGTACAGAGAACGGCAATTGTACTCTAATTT
GGTTGGTATTGCAGTACAACTTATTCCAATAGCTGGGGGAGCTATGGCGA
AGATTATTCTTGCAGGTGCCGAGATTGCCGAAGGATTAGCTGCTGGAGAA
GTCGTCGAGTACGTGTTATCATTCGCAGCTGGGTTACTTGAAGACGAGAA
TTTTTCGAAGTTACCGCCAAGCAGACAGACGGAAGTCAAGACGATACTCC
ACGAATACGGATATACAACAGATGATATTCGATTACTTTTGCACAGCTGC
GTGAATATAGGAGACTCAGATGCTGAAATTGCACTCGGTGCGCGGGCAAC
CGAAGATGGAAGGCCAGCGCATTGTGCGCAAATCCAAGTAGCCGCCCGTG
ATGAGCGTGAATCTTGCAACAGCGAAAGTGAGGGTTGCGAGGCAGATAAC
ATTGAAGAAAGCGGCCAACCAGTACATTGCAAGCCCTCACTTACGACAAA
CGACGGCTTTTCAGAGACTTGGACAAGACACATCTTGGGATGCAGAAATA
CAGAGGAAGCAAAACGAAATGGAATGGCGGCATGCTTGGTGGAGTTCCTG
GAGAATGAAGACATTACGATTAGTGCACTGAAAGCGCGATCATCAGCTGA
ACTGAATACGCTGAAGGATGCCGCGATATTGGCTGTACAACAAAAGCTGG
GGATTCAAATGAGAATCGGACAAAAACTTAGATTGAGGGAGTTCTTGGAT
GACTTTTGCAAAGAAGGAGTTGTGGAGTAA

Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:8800..9879+

>Gcaud8614.t1 ID=Gcaud8614.t1|Name=Gcaud8614.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1080bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:8800..9879+ (Gracilaria caudata M_176_S67 male)
ATGCTGGCAGTGAAGGATGGAACTGTAGATGCCTCTGCTGATGTAGAGGA
TAATTTATACTACTGGAAAGATCAACTGTACTGCACTGTTCCAGAGTATC
AAGTGACAAGCATCGAAGACAAGAATCATATCTTCAAGTGTCTACGTGCA
GCCCATGGAGTGGGACTCATTGAGTCGCCGGAGGTTTATGTACAGGCAAT
TCACATCATGGATTCAGTGCGAAAGGAAGTACTCGTATTGAAAAAGGCAG
GCATAAAGCTACTGGAACGTGTTCTGGCACTTGAAGCAAACTTAGAGGAC
CTCAGAGCTGCTTTTCAGAGGTACAGAGAACGGCAATTGTACTCTAATTT
GGTTGGTATTGCAGTACAACTTATTCCAATAGCTGGGGGAGCTATGGCGA
AGATTATTCTTGCAGGTGCCGAGATTGCCGAAGGATTAGCTGCTGGAGAA
GTCGTCGAGTACGTGTTATCATTCGCAGCTGGGTTACTTGAAGACGAGAA
TTTTTCGAAGTTACCGCCAAGCAGACAGACGGAAGTCAAGACGATACTCC
ACGAATACGGATATACAACAGATGATATTCGATTACTTTTGCACAGCTGC
GTGAATATAGGAGACTCAGATGCTGAAATTGCACTCGGTGCGCGGGCAAC
CGAAGATGGAAGGCCAGCGCATTGTGCGCAAATCCAAGTAGCCGCCCGTG
ATGAGCGTGAATCTTGCAACAGCGAAAGTGAGGGTTGCGAGGCAGATAAC
ATTGAAGAAAGCGGCCAACCAGTACATTGCAAGCCCTCACTTACGACAAA
CGACGGCTTTTCAGAGACTTGGACAAGACACATCTTGGGATGCAGAAATA
CAGAGGAAGCAAAACGAAATGGAATGGCGGCATGCTTGGTGGAGTTCCTG
GAGAATGAAGACATTACGATTAGTGCACTGAAAGCGCGATCATCAGCTGA
ACTGAATACGCTGAAGGATGCCGCGATATTGGCTGTACAACAAAAGCTGG
GGATTCAAATGAGAATCGGACAAAAACTTAGATTGAGGGAGTTCTTGGAT
GACTTTTGCAAAGAAGGAGTTGTGGAGTAA