Gcaud8574.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8574.t1
Unique Name	Gcaud8574.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	276

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_15_length_84509_cov_4.337096	contig	NODE_15_length_84509_cov_4.337096:48139..49046 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ17480
PFAMs	adh_short
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010033,GO:0016491,GO:0042221,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0110095,GO:0110096,GO:1901700,GO:1901701,GO:1990748
Evalue	1.83e-66
EggNOG OGs	COG1028@1\|root,KOG1611@2759\|Eukaryota,37REF@33090\|Viridiplantae,3GAWI@35493\|Streptophyta
Description	Belongs to the short-chain dehydrogenases reductases (SDR) family
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8574	Gcaud8574	Gracilaria caudata M_176_S67 male	gene	NODE_15_length_84509_cov_4.337096 48139..49046 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8574.t1	Gcaud8574.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_15_length_84509_cov_4.337096 48139..49046 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8574.t1.start1	Gcaud8574.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_15_length_84509_cov_4.337096 48139..48141 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8574.t1.CDS1	Gcaud8574.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 48139..48402 +
Gcaud8574.t1.CDS2	Gcaud8574.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 48483..49046 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8574.t1.exon1	Gcaud8574.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 48139..48402 +
Gcaud8574.t1.exon2	Gcaud8574.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 48483..49046 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8574.t1.intron1	Gcaud8574.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_15_length_84509_cov_4.337096 48403..48482 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8574.t1.stop1	Gcaud8574.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_15_length_84509_cov_4.337096 49044..49046 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_15_length_84509_cov_4.337096:48139..49046+
coding sequence from alignment at NODE_15_length_84509_cov_4.337096:48139..49046+

mRNA sequence

>Gcaud8574.t1 ID=Gcaud8574.t1|Name=Gcaud8574.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=276bp
MHTRGAHSTPAAAADANIRNSDRNAVAVVVGASRGIGLAITQQLVTRWKG
RIVATCRDPDKAGALSALWQFMPDRFSVIRLDVENEDSIQDAVQNVKEWT
EDSRVDLLMHTAGVLHDGENMPETSLSRVNANWLQKNIAINLMGPVLVAK
HFAPLMTTARKKDRVPSVLATLSARVGSISDNSLGGWLSYRASKAGQNQA
MKTISIELQRRGVICVALHPGTVATDLSAPFQKNVKPEKLFAVDDAANWL
LDVVDSLEMEDTGGFFAYDRKPIPF*

spliced messenger RNA

>Gcaud8574.t1 ID=Gcaud8574.t1|Name=Gcaud8574.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=828bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:48139..49046+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATACCAGAGGTGCTCATTCGACGCCAGCCGCTGCCGCGGATGCAAA
TATCAGAAACTCGGACCGAAATGCTGTTGCCGTGGTGGTGGGAGCAAGTA
GAGGTATCGGATTGGCGATAACGCAGCAATTAGTGACCAGATGGAAAGGT
CGGATTGTTGCAACATGTCGAGACCCTGATAAGGCTGGTGCCCTTTCAGC
TCTTTGGCAATTCATGCCGGATCGTTTCAGCGTGATCCGACTAGATGTTG
AGAACGAGGATTCAATACAAGACGCTGTTCAAAATGTAAAGGAGTGGACT
GAAGACTCTCGGGTTGATTTACTAATGCATACTGCGGGTGTTCTTCACGA
TGGAGAGAACATGCCGGAGACATCATTATCTCGGGTGAATGCAAACTGGC
TTCAAAAGAACATAGCGATTAATTTGATGGGTCCCGTTCTGGTGGCGAAG
CATTTTGCGCCTTTGATGACCACTGCTCGCAAGAAAGACCGTGTTCCATC
GGTGCTAGCCACACTTTCTGCTCGCGTGGGGAGTATCTCAGACAATTCGC
TTGGAGGATGGCTTTCATATCGAGCGTCAAAGGCGGGGCAGAATCAGGCT
ATGAAGACGATCAGTATTGAGCTTCAAAGGCGGGGCGTGATTTGTGTGGC
ACTGCACCCGGGTACCGTGGCAACAGACCTTTCAGCACCGTTTCAGAAGA
ATGTGAAGCCTGAGAAGCTGTTTGCAGTCGATGACGCTGCAAACTGGTTA
CTGGACGTTGTAGATTCGTTGGAAATGGAGGACACAGGTGGGTTTTTTGC
TTACGATAGAAAGCCGATTCCGTTTTGA

protein sequence of Gcaud8574.t1

>Gcaud8574.t1 ID=Gcaud8574.t1|Name=Gcaud8574.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=276bp
MHTRGAHSTPAAAADANIRNSDRNAVAVVVGASRGIGLAITQQLVTRWKG
RIVATCRDPDKAGALSALWQFMPDRFSVIRLDVENEDSIQDAVQNVKEWT
EDSRVDLLMHTAGVLHDGENMPETSLSRVNANWLQKNIAINLMGPVLVAK
HFAPLMTTARKKDRVPSVLATLSARVGSISDNSLGGWLSYRASKAGQNQA
MKTISIELQRRGVICVALHPGTVATDLSAPFQKNVKPEKLFAVDDAANWL
LDVVDSLEMEDTGGFFAYDRKPIPF*

mRNA from alignment at NODE_15_length_84509_cov_4.337096:48139..49046+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8574.t1 ID=Gcaud8574.t1|Name=Gcaud8574.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=908bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:48139..49046+ (Gracilaria caudata M_176_S67 male)
ATGCATACCAGAGGTGCTCATTCGACGCCAGCCGCTGCCGCGGATGCAAA
TATCAGAAACTCGGACCGAAATGCTGTTGCCGTGGTGGTGGGAGCAAGTA
GAGGTATCGGATTGGCGATAACGCAGCAATTAGTGACCAGATGGAAAGGT
CGGATTGTTGCAACATGTCGAGACCCTGATAAGGCTGGTGCCCTTTCAGC
TCTTTGGCAATTCATGCCGGATCGTTTCAGCGTGATCCGACTAGATGTTG
AGAACGAGGATTCAGTACGTTAGAAGTTATTATTCTCAGAGTGCACAAAC
AGTAATTGGGGAAATCTAACTTGTGTAATGAACTCGTGGAACAGATACAA
GACGCTGTTCAAAATGTAAAGGAGTGGACTGAAGACTCTCGGGTTGATTT
ACTAATGCATACTGCGGGTGTTCTTCACGATGGAGAGAACATGCCGGAGA
CATCATTATCTCGGGTGAATGCAAACTGGCTTCAAAAGAACATAGCGATT
AATTTGATGGGTCCCGTTCTGGTGGCGAAGCATTTTGCGCCTTTGATGAC
CACTGCTCGCAAGAAAGACCGTGTTCCATCGGTGCTAGCCACACTTTCTG
CTCGCGTGGGGAGTATCTCAGACAATTCGCTTGGAGGATGGCTTTCATAT
CGAGCGTCAAAGGCGGGGCAGAATCAGGCTATGAAGACGATCAGTATTGA
GCTTCAAAGGCGGGGCGTGATTTGTGTGGCACTGCACCCGGGTACCGTGG
CAACAGACCTTTCAGCACCGTTTCAGAAGAATGTGAAGCCTGAGAAGCTG
TTTGCAGTCGATGACGCTGCAAACTGGTTACTGGACGTTGTAGATTCGTT
GGAAATGGAGGACACAGGTGGGTTTTTTGCTTACGATAGAAAGCCGATTC
CGTTTTGA

Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:48139..49046+

>Gcaud8574.t1 ID=Gcaud8574.t1|Name=Gcaud8574.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=828bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:48139..49046+ (Gracilaria caudata M_176_S67 male)
ATGCATACCAGAGGTGCTCATTCGACGCCAGCCGCTGCCGCGGATGCAAA
TATCAGAAACTCGGACCGAAATGCTGTTGCCGTGGTGGTGGGAGCAAGTA
GAGGTATCGGATTGGCGATAACGCAGCAATTAGTGACCAGATGGAAAGGT
CGGATTGTTGCAACATGTCGAGACCCTGATAAGGCTGGTGCCCTTTCAGC
TCTTTGGCAATTCATGCCGGATCGTTTCAGCGTGATCCGACTAGATGTTG
AGAACGAGGATTCAATACAAGACGCTGTTCAAAATGTAAAGGAGTGGACT
GAAGACTCTCGGGTTGATTTACTAATGCATACTGCGGGTGTTCTTCACGA
TGGAGAGAACATGCCGGAGACATCATTATCTCGGGTGAATGCAAACTGGC
TTCAAAAGAACATAGCGATTAATTTGATGGGTCCCGTTCTGGTGGCGAAG
CATTTTGCGCCTTTGATGACCACTGCTCGCAAGAAAGACCGTGTTCCATC
GGTGCTAGCCACACTTTCTGCTCGCGTGGGGAGTATCTCAGACAATTCGC
TTGGAGGATGGCTTTCATATCGAGCGTCAAAGGCGGGGCAGAATCAGGCT
ATGAAGACGATCAGTATTGAGCTTCAAAGGCGGGGCGTGATTTGTGTGGC
ACTGCACCCGGGTACCGTGGCAACAGACCTTTCAGCACCGTTTCAGAAGA
ATGTGAAGCCTGAGAAGCTGTTTGCAGTCGATGACGCTGCAAACTGGTTA
CTGGACGTTGTAGATTCGTTGGAAATGGAGGACACAGGTGGGTTTTTTGC
TTACGATAGAAAGCCGATTCCGTTTTGA