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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 314271.RB2654_08177 |
| PFAMs | Glyco_transf_7C |
| Max annot lvl | 28211|Alphaproteobacteria |
| Evalue | 2.2e-31 |
| EggNOG OGs | COG1216@1|root,COG1216@2|Bacteria,1MZBS@1224|Proteobacteria,2UEUD@28211|Alphaproteobacteria |
| Description | N-terminal domain of galactosyltransferase |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8556.t1.stop1 | Gcaud8556.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_162_length_42220_cov_4.454604 39214..39216 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8556.t1.start1 | Gcaud8556.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_162_length_42220_cov_4.454604 41700..41702 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8556.t1 ID=Gcaud8556.t1|Name=Gcaud8556.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=782bp LASSLAALLRAHPSRIPHARIRLFAVFILLFLLLFTLIFIPLRFFLGRTN SSTNSPHQINVDRVQKGLAPVEYWPSSDSLARALAPPPLPVLKDISLEHI RHLRSRRRKGSVTLVAACRDRTAFLQTALPGWLQAIRPQDDVLLVDWGTR PPDHVPLEEVVRVSAGPKVAVVTVKEPGQWILSRAYNLAFALATGEWIFK VDCDTEVRQSFFDRHPLRRSNHPSSFFYRYDWRKAADENQKHLAGVFLAR ADHLARVHGYDERIATYGWDDSDLYSRLQANGTPEGEQLVPLDIQPATLS HMSHSDDLRSANQHLVLGPSMETELNSQAVSVLPNWHDVAQTQRTVYTFD VFSRDARFIAARVQTTPVPLLDQLTQEQRSSIMEEGTNRLLHDTYGFPWL VLSEINRSRSELARSLAALGKSIKSRSPSGFIFAEVGGSVPQRLLAMSSA LALAIVHERPLFLAWSSGSREEPTPRITDFFDVDNSGFLIDDDLSISSRR KGARVYQIGRWKCRYSLDICAQSDSAFETMTEFRTGAHEDETKAAQNVLN VLNGKVAGKRNVLLRLEGAFPLQTPSERSRAFASLTPSSALASHINKLGV VSDHVGVYLGPGIRQRGIDAMVKRLRMHTGDDTLYFVSGAERSVVDVTRK LLPSSSEVSTAVGEPVLYGATEEIRGTTRDIAELYALSTCRDMVNDGRPP ASVLEVLSLLKHRMSLHPIIVAGFRARDAWTRSSEVVKSHPVCRAMYIAL CGLQHFIIPIRLLLFEVHFVPRASHAFQLQC* back to topspliced messenger RNA >Gcaud8556.t1 ID=Gcaud8556.t1|Name=Gcaud8556.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2346bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:39214..41702- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
CTGGCCTCTTCTCTGGCTGCTTTGCTCCGCGCACATCCCTCCCGCATCCC CCACGCTCGCATTCGTCTGTTCGCAGTCTTCATCTTGCTCTTCCTTCTGC TTTTCACTCTCATCTTCATACCTCTGCGCTTCTTTCTTGGCCGCACCAAC TCGTCCACTAATTCCCCGCATCAAATTAACGTAGATCGCGTTCAAAAAGG TCTTGCTCCCGTCGAGTACTGGCCATCATCTGATTCCCTGGCACGAGCAC TCGCGCCACCACCACTTCCAGTGCTCAAGGACATCAGTCTGGAACATATC AGGCATCTTCGCAGTAGAAGAAGGAAAGGCTCCGTAACTCTTGTTGCAGC CTGCAGGGATCGCACAGCCTTCTTGCAGACAGCATTACCAGGCTGGTTGC AAGCTATCAGGCCGCAAGACGATGTGCTGCTCGTTGATTGGGGCACCAGG CCACCGGACCATGTACCCCTCGAGGAGGTCGTCAGAGTTTCTGCTGGCCC GAAGGTAGCCGTTGTTACCGTAAAAGAGCCGGGTCAGTGGATATTGTCCC GAGCGTATAATCTTGCCTTCGCGCTTGCAACTGGCGAGTGGATTTTCAAG GTGGATTGTGATACTGAGGTTCGCCAAAGTTTTTTCGATCGCCACCCGCT GCGAAGAAGTAACCATCCTTCCTCCTTCTTCTATCGCTACGACTGGCGAA AAGCCGCAGACGAGAATCAAAAGCATCTTGCAGGTGTGTTCCTCGCTCGT GCGGACCACCTTGCTCGTGTTCACGGTTATGATGAGCGAATTGCCACCTA TGGTTGGGATGACTCTGATCTCTACTCTCGCTTGCAAGCCAATGGTACCC CAGAGGGAGAACAGCTGGTACCTCTTGACATCCAACCTGCTACCCTTTCT CATATGAGTCACAGCGACGATCTAAGGTCTGCAAATCAGCATCTTGTTCT GGGTCCTTCGATGGAAACCGAGCTCAATAGCCAAGCTGTGTCAGTACTTC CCAATTGGCATGACGTTGCCCAAACGCAGAGAACCGTCTACACGTTTGAT GTATTCTCACGTGATGCACGTTTCATTGCAGCGAGAGTTCAAACCACACC TGTCCCGTTACTTGACCAACTAACACAAGAACAACGCTCTTCGATCATGG AAGAGGGTACTAATCGATTACTACACGACACTTACGGTTTCCCCTGGCTC GTGCTCTCAGAAATTAATCGTTCGCGTTCGGAATTAGCTCGCTCACTTGC CGCACTGGGCAAGTCGATCAAATCCCGTTCGCCATCTGGTTTCATATTCG CAGAAGTTGGCGGATCTGTGCCCCAGCGTCTGCTCGCAATGTCCTCCGCC CTTGCCCTGGCCATCGTTCATGAGCGTCCCCTATTTCTTGCTTGGAGTTC CGGCTCTCGAGAGGAACCCACACCACGAATCACCGACTTTTTCGACGTTG ATAACAGCGGTTTTCTGATAGATGATGACCTGTCAATTTCCTCGAGGCGT AAGGGTGCGCGCGTATATCAGATTGGAAGGTGGAAATGCCGTTACTCTCT TGATATATGCGCACAGTCAGATTCTGCTTTCGAAACGATGACCGAGTTCC GAACCGGGGCCCATGAAGACGAAACCAAAGCCGCCCAAAATGTACTTAAT GTCCTTAACGGCAAGGTTGCCGGGAAGAGAAACGTGCTTCTCAGATTGGA GGGTGCTTTCCCGCTGCAGACGCCTTCTGAGAGATCTCGTGCCTTCGCAT CTCTAACTCCCTCGTCGGCGTTAGCGTCCCACATTAACAAGCTAGGGGTA GTGTCGGATCATGTGGGAGTTTATCTTGGCCCCGGTATTCGTCAAAGGGG TATTGATGCCATGGTGAAGCGACTGCGAATGCACACGGGTGACGATACCT TGTACTTCGTCAGCGGCGCTGAGCGCAGCGTTGTAGATGTTACGCGAAAG TTGTTGCCATCGTCTTCAGAAGTTTCCACTGCTGTCGGAGAACCTGTGTT ATATGGAGCTACTGAAGAAATCAGAGGTACAACTCGAGATATTGCTGAAC TTTATGCGCTCTCCACATGTCGGGATATGGTTAATGATGGGCGTCCACCT GCGTCTGTCTTAGAGGTTCTTTCATTGCTGAAGCATCGCATGTCTCTGCA CCCGATAATTGTAGCTGGGTTTAGAGCTCGCGACGCATGGACTCGCAGCT CCGAAGTTGTTAAGTCACATCCAGTTTGTCGTGCGATGTACATAGCTCTA TGTGGCTTGCAACACTTCATCATTCCTATTCGATTACTTCTGTTTGAGGT TCACTTTGTACCTAGAGCTTCGCATGCATTTCAGCTACAATGTTGA back to topprotein sequence of Gcaud8556.t1 >Gcaud8556.t1 ID=Gcaud8556.t1|Name=Gcaud8556.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=782bp
LASSLAALLRAHPSRIPHARIRLFAVFILLFLLLFTLIFIPLRFFLGRTN SSTNSPHQINVDRVQKGLAPVEYWPSSDSLARALAPPPLPVLKDISLEHI RHLRSRRRKGSVTLVAACRDRTAFLQTALPGWLQAIRPQDDVLLVDWGTR PPDHVPLEEVVRVSAGPKVAVVTVKEPGQWILSRAYNLAFALATGEWIFK VDCDTEVRQSFFDRHPLRRSNHPSSFFYRYDWRKAADENQKHLAGVFLAR ADHLARVHGYDERIATYGWDDSDLYSRLQANGTPEGEQLVPLDIQPATLS HMSHSDDLRSANQHLVLGPSMETELNSQAVSVLPNWHDVAQTQRTVYTFD VFSRDARFIAARVQTTPVPLLDQLTQEQRSSIMEEGTNRLLHDTYGFPWL VLSEINRSRSELARSLAALGKSIKSRSPSGFIFAEVGGSVPQRLLAMSSA LALAIVHERPLFLAWSSGSREEPTPRITDFFDVDNSGFLIDDDLSISSRR KGARVYQIGRWKCRYSLDICAQSDSAFETMTEFRTGAHEDETKAAQNVLN VLNGKVAGKRNVLLRLEGAFPLQTPSERSRAFASLTPSSALASHINKLGV VSDHVGVYLGPGIRQRGIDAMVKRLRMHTGDDTLYFVSGAERSVVDVTRK LLPSSSEVSTAVGEPVLYGATEEIRGTTRDIAELYALSTCRDMVNDGRPP ASVLEVLSLLKHRMSLHPIIVAGFRARDAWTRSSEVVKSHPVCRAMYIAL CGLQHFIIPIRLLLFEVHFVPRASHAFQLQC* back to topmRNA from alignment at NODE_162_length_42220_cov_4.454604:39214..41702- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8556.t1 ID=Gcaud8556.t1|Name=Gcaud8556.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2489bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:39214..41702- (Gracilaria caudata M_176_S67 male) CTGGCCTCTTCTCTGGCTGCTTTGCTCCGCGCACATCCCTCCCGCATCCC
CCACGCTCGCATTCGTCTGTTCGCAGTCTTCATCTTGCTCTTCCTTCTGC
TTTTCACTCTCATCTTCATACCTCTGCGCTTCTTTCTTGGCCGCACCAAC
TCGTCCACTAATTCCCCGCATCAAATTAACGTAGATCGCGTTCAAAAAGG
TCTTGCTCCCGTCGAGTACTGGCCATCATCTGATTCCCTGGCACGAGCAC
TCGCGCCACCACCACTTCCAGTGCTCAAGGACATCAGTCTGGAACATATC
AGGCATCTTCGCAGTAGAAGAAGGAAAGGCTCCGTAACTCTTGTTGCAGC
CTGCAGGGATCGCACAGCCTTCTTGCAGACAGCATTACCAGGCTGGTTGC
AAGCTATCAGGCCGCAAGACGATGTGCTGCTCGTTGATTGGGGCACCAGG
CCACCGGACCATGTACCCCTCGAGGAGGTCGTCAGAGTTTCTGCTGGCCC
GAAGGTAGCCGTTGTTACCGTAAAAGAGCCGGGTCAGTGGATATTGTCCC
GAGCGTATAATCTTGCCTTCGCGCTTGCAACTGGCGAGTGGATTTTCAAG
GTGGATTGTGATACTGAGGTTCGCCAAAGTTTTTTCGATCGCCACCCGCT
GCGAAGAAGTAACCATCCTTCCTCCTTCTTCTATCGCTACGACTGGCGAA
AAGCCGCAGACGAGAATCAAAAGCATCTTGCAGGTGTGTTCCTCGCTCGT
GCGGACCACCTTGCTCGTGTTCACGGTTATGATGAGCGAATTGCCACCTA
TGGTTGGGATGACTCTGATCTCTACTCTCGCTTGCAAGCCAATGGTACCC
CAGAGGGAGAACAGCTGGTACCTCTTGACATCCAACCTGCTACCCTTTCT
CATATGAGTCACAGCGACGATCTAAGGTCTGCAAATCAGCATCTTGTTCT
GGGTCCTTCGATGGAAACCGAGCTCAATAGCCAAGCTGTGTCAGTACTTC
CCAATTGGCATGACGTTGCCCAAACGCAGAGAACCGTCTACACGTTTGAT
GTATTCTCACGTGATGCACGTTTCATTGCAGCGAGAGTTCAAACCACACC
TGTCCCGTTACTTGACCAACTAACACAAGAACAACGCTCTTCGATCATGG
AAGAGGGTACTAATCGATTACTACACGACACTTACGGTTTCCCCTGGCTC
GTGCTCTCAGAAATTAATCGTTCGCGTTCGGAATTAGCTCGCTCACTTGC
CGCACTGGGCAAGTCGATCAAATCCCGTTCGCCATCTGGTTTCATATTCG
CAGAAGTTGGCGGATCTGTGCCCCAGCGTCTGCTCGCAATGTCCTCCGCC
CTTGCCCTGGCCATCGTTCATGAGCGTCCCCTATTTCTTGCTTGGAGTTC
CGGCTCTCGAGAGGAACCCACACCACGAATCACCGACTTTTTCGACGTTG
ATAACAGCGGTTTTCTGATAGATGATGACCTGTCAATTTCCTCGAGGCGT
AAGGGTGCGCGCGTATATCAGATTGGAAGGTGGAAATGCCGTTACTCTCT
TGATATATGCGCACAGTCAGATTCTGCTTTCGAAACGATGACCGAGTTCC
GAACCGGGGCCCATGAAGACGAAACCAAAGCCGCCCAAAATGTACTTAAT
GTCCTTAACGGCAAGGTTGCCGGGAAGAGAAACGTGCTTCTCAGATTGGA
GGGTGCTTTCCCGCTGCAGACGCCTTCTGAGAGATCTCGTGCCTTCGCAT
CTCTAACTCCCTCGTCGGCGTTAGCGTCCCACATTAACAAGCTAGGGGTA
GTGTCGGATCATGTGGGAGTTTATCTTGGCCCCGGTATTCGTCAAAGGGG
TATTGATGCCATGGTGAAGCGACTGCGAATGCACACGGGTGACGATACCT
TGTACTTCGTCAGCGGCGCTGAGCGCAGCGTTGTAGATGTTACGCGAAAG
TTGTTGCCATCGTCTTCAGAAGTTTCCACTGCTGTCGGAGAACCTGTGTT
ATATGGAGCTACTGAAGAAATCAGAGGTACAACTCGAGATATTGCTGAAC
TTTATGCGCTCTCCACATGTCGGGATATGGTTAATGATGGGCGTCCACCT
GCGTCTGTCTTAGAGGTTCTTTCATTGCTGAAGCATCGCATGTCTCTGCA
CCCGTAAGCACATCGTGTGCCCGAAGGTTTCTTTTCGACTTGTTTTTCGG
TTATCCGGTCACACCACTTGCTACCAGGATAATTGTAGCTGGGTTTAGAG
CTCGCGACGCATGGACTCGCAGCTCCGAAGTTGTTAAGTCACATCCAGTT
TGTCGTGCGATGTACATAGCTCTATGTGGCTTGCAACACTTCATCATTCC
TATTCGATTACTTCTGTTTGTATGTTGTTTGGTAGATGTCCTCCTAAGAC
TATGACAAACACAGACTTACTAACCTAAAGGGGGATAGGAGGTTCACTTT
GTACCTAGAGCTTCGCATGCATTTCAGCTACAATGTTGA back to topCoding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:39214..41702- >Gcaud8556.t1 ID=Gcaud8556.t1|Name=Gcaud8556.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2346bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:39214..41702- (Gracilaria caudata M_176_S67 male) CTGGCCTCTTCTCTGGCTGCTTTGCTCCGCGCACATCCCTCCCGCATCCC CCACGCTCGCATTCGTCTGTTCGCAGTCTTCATCTTGCTCTTCCTTCTGC TTTTCACTCTCATCTTCATACCTCTGCGCTTCTTTCTTGGCCGCACCAAC TCGTCCACTAATTCCCCGCATCAAATTAACGTAGATCGCGTTCAAAAAGG TCTTGCTCCCGTCGAGTACTGGCCATCATCTGATTCCCTGGCACGAGCAC TCGCGCCACCACCACTTCCAGTGCTCAAGGACATCAGTCTGGAACATATC AGGCATCTTCGCAGTAGAAGAAGGAAAGGCTCCGTAACTCTTGTTGCAGC CTGCAGGGATCGCACAGCCTTCTTGCAGACAGCATTACCAGGCTGGTTGC AAGCTATCAGGCCGCAAGACGATGTGCTGCTCGTTGATTGGGGCACCAGG CCACCGGACCATGTACCCCTCGAGGAGGTCGTCAGAGTTTCTGCTGGCCC GAAGGTAGCCGTTGTTACCGTAAAAGAGCCGGGTCAGTGGATATTGTCCC GAGCGTATAATCTTGCCTTCGCGCTTGCAACTGGCGAGTGGATTTTCAAG GTGGATTGTGATACTGAGGTTCGCCAAAGTTTTTTCGATCGCCACCCGCT GCGAAGAAGTAACCATCCTTCCTCCTTCTTCTATCGCTACGACTGGCGAA AAGCCGCAGACGAGAATCAAAAGCATCTTGCAGGTGTGTTCCTCGCTCGT GCGGACCACCTTGCTCGTGTTCACGGTTATGATGAGCGAATTGCCACCTA TGGTTGGGATGACTCTGATCTCTACTCTCGCTTGCAAGCCAATGGTACCC CAGAGGGAGAACAGCTGGTACCTCTTGACATCCAACCTGCTACCCTTTCT CATATGAGTCACAGCGACGATCTAAGGTCTGCAAATCAGCATCTTGTTCT GGGTCCTTCGATGGAAACCGAGCTCAATAGCCAAGCTGTGTCAGTACTTC CCAATTGGCATGACGTTGCCCAAACGCAGAGAACCGTCTACACGTTTGAT GTATTCTCACGTGATGCACGTTTCATTGCAGCGAGAGTTCAAACCACACC TGTCCCGTTACTTGACCAACTAACACAAGAACAACGCTCTTCGATCATGG AAGAGGGTACTAATCGATTACTACACGACACTTACGGTTTCCCCTGGCTC GTGCTCTCAGAAATTAATCGTTCGCGTTCGGAATTAGCTCGCTCACTTGC CGCACTGGGCAAGTCGATCAAATCCCGTTCGCCATCTGGTTTCATATTCG CAGAAGTTGGCGGATCTGTGCCCCAGCGTCTGCTCGCAATGTCCTCCGCC CTTGCCCTGGCCATCGTTCATGAGCGTCCCCTATTTCTTGCTTGGAGTTC CGGCTCTCGAGAGGAACCCACACCACGAATCACCGACTTTTTCGACGTTG ATAACAGCGGTTTTCTGATAGATGATGACCTGTCAATTTCCTCGAGGCGT AAGGGTGCGCGCGTATATCAGATTGGAAGGTGGAAATGCCGTTACTCTCT TGATATATGCGCACAGTCAGATTCTGCTTTCGAAACGATGACCGAGTTCC GAACCGGGGCCCATGAAGACGAAACCAAAGCCGCCCAAAATGTACTTAAT GTCCTTAACGGCAAGGTTGCCGGGAAGAGAAACGTGCTTCTCAGATTGGA GGGTGCTTTCCCGCTGCAGACGCCTTCTGAGAGATCTCGTGCCTTCGCAT CTCTAACTCCCTCGTCGGCGTTAGCGTCCCACATTAACAAGCTAGGGGTA GTGTCGGATCATGTGGGAGTTTATCTTGGCCCCGGTATTCGTCAAAGGGG TATTGATGCCATGGTGAAGCGACTGCGAATGCACACGGGTGACGATACCT TGTACTTCGTCAGCGGCGCTGAGCGCAGCGTTGTAGATGTTACGCGAAAG TTGTTGCCATCGTCTTCAGAAGTTTCCACTGCTGTCGGAGAACCTGTGTT ATATGGAGCTACTGAAGAAATCAGAGGTACAACTCGAGATATTGCTGAAC TTTATGCGCTCTCCACATGTCGGGATATGGTTAATGATGGGCGTCCACCT GCGTCTGTCTTAGAGGTTCTTTCATTGCTGAAGCATCGCATGTCTCTGCA CCCGATAATTGTAGCTGGGTTTAGAGCTCGCGACGCATGGACTCGCAGCT CCGAAGTTGTTAAGTCACATCCAGTTTGTCGTGCGATGTACATAGCTCTA TGTGGCTTGCAACACTTCATCATTCCTATTCGATTACTTCTGTTTGAGGT TCACTTTGTACCTAGAGCTTCGCATGCATTTCAGCTACAATGTTGA back to top
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