Gcaud8552.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8552.t1
Unique Name	Gcaud8552.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	634

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_162_length_42220_cov_4.454604	contig	NODE_162_length_42220_cov_4.454604:20384..22285 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8552	Gcaud8552	Gracilaria caudata M_176_S67 male	gene	NODE_162_length_42220_cov_4.454604 20384..22285 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8552.t1.start1	Gcaud8552.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_162_length_42220_cov_4.454604 20384..20386 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8552.t1.CDS1	Gcaud8552.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_162_length_42220_cov_4.454604 20384..22285 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8552.t1.exon1	Gcaud8552.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_162_length_42220_cov_4.454604 20384..22285 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8552.t1.stop1	Gcaud8552.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_162_length_42220_cov_4.454604 22283..22285 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8552.t1	Gcaud8552.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_162_length_42220_cov_4.454604 20384..22285 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_162_length_42220_cov_4.454604:20384..22285+
coding sequence from alignment at NODE_162_length_42220_cov_4.454604:20384..22285+

mRNA sequence

>Gcaud8552.t1 ID=Gcaud8552.t1|Name=Gcaud8552.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=634bp
MSEPNPLRSALLSFFNTLLSADDSSAYSIFYAAKNRFEAVASEHYDRFAS
RSDAVYARVISLLDIITPEELLKVCEGFRQISLTDPYNALNAARPAFRAG
IRALLYGCANGIEPCAVSYRHSPHHSGRTVSRVTADRLRVRLPGLLGWPK
SCHAVDKTCVVWIDRAVKGLSSDGAWFVRGLLPYAVVAIAIAHAGIPDMQ
RPWIWLEWMLSSRSMMAEGLRGVVAPSEVVFIALQAMYMPGDMLRKYEYK
DEMEAVILDMFLFGLAALSNIMKDRNNAVAGWSDYKVGLAVVLALSLSPG
DTKWSFVLVDDGNPYGNNLFRCGFVNLLQCAGAEIQLTDDARAYAFVDGQ
IALMKMKRNQLSIARKTKKELIARLNKVAEKGRLARYLKDELHSVSVYCD
VNAELPQHDFITVDELAVLASCQVTLHEHWERRMKTDDDIRSGTLTEDLV
VLVAMALDVDKAVDSSRRKNAYNLKRWRQKTQRGSASPEWLENVNTDEAD
ANSAVESTLRKGVVFADYNQGCVRVTTQIGDETVFRRLGRPTVGATERCS
AVFACVHGHVGCATAAALNGSKWRLPRVTAGKIHDEVVVVECTKDQIYGV
VHTSHDAIQERLLRIPSSSGSDAALVSDAQAPI*

spliced messenger RNA

>Gcaud8552.t1 ID=Gcaud8552.t1|Name=Gcaud8552.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1902bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:20384..22285+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAACCGAACCCTCTTCGATCAGCACTTCTCTCATTCTTCAACAC
CCTGCTATCAGCCGATGACTCCTCCGCCTACTCCATCTTCTACGCCGCAA
AGAACCGTTTTGAAGCCGTAGCATCTGAACACTACGATCGTTTTGCCTCT
CGATCTGACGCCGTCTACGCCCGTGTGATATCGCTACTCGACATCATCAC
GCCCGAGGAACTCCTGAAAGTCTGCGAAGGTTTCCGACAGATATCTCTCA
CAGATCCTTATAATGCTCTCAACGCTGCCCGTCCCGCCTTTCGCGCAGGA
ATACGTGCTCTCCTTTACGGTTGCGCAAACGGTATCGAACCTTGTGCCGT
AAGCTACCGTCACTCTCCGCACCACTCCGGCCGAACAGTGAGTCGTGTCA
CAGCGGATCGTTTACGCGTACGTTTGCCTGGTTTGCTTGGTTGGCCGAAA
AGTTGTCATGCCGTAGACAAGACCTGTGTGGTCTGGATAGATCGCGCAGT
GAAAGGTCTTTCCTCTGATGGCGCCTGGTTCGTCCGCGGGTTGCTTCCGT
ACGCTGTTGTCGCTATTGCTATTGCCCATGCAGGTATCCCAGATATGCAG
AGACCATGGATATGGTTGGAATGGATGCTGAGTTCACGGTCGATGATGGC
GGAAGGCTTACGCGGCGTTGTGGCTCCATCGGAGGTGGTCTTCATTGCAC
TTCAGGCCATGTACATGCCAGGGGATATGCTCAGAAAGTACGAGTATAAA
GACGAGATGGAGGCGGTTATTTTGGACATGTTCCTCTTTGGACTTGCTGC
CTTGAGTAACATCATGAAAGACAGGAATAACGCTGTTGCAGGCTGGAGTG
ATTACAAGGTTGGGCTTGCTGTTGTCCTGGCCCTTTCACTATCCCCCGGT
GACACAAAATGGAGTTTCGTCCTTGTCGATGATGGAAATCCATACGGGAA
CAATTTGTTCAGGTGTGGATTTGTGAACCTGTTGCAGTGCGCGGGCGCGG
AGATACAACTGACTGATGACGCTCGAGCGTACGCCTTCGTAGACGGCCAG
ATCGCTCTTATGAAAATGAAGCGTAATCAGTTGAGCATAGCAAGGAAAAC
CAAAAAGGAATTGATAGCAAGGCTTAACAAAGTAGCAGAGAAGGGAAGGC
TCGCGCGATATCTGAAGGATGAGCTTCACAGCGTGTCAGTTTATTGCGAT
GTGAACGCCGAACTTCCACAGCATGACTTCATAACGGTGGATGAACTCGC
CGTTCTGGCGTCCTGCCAGGTTACTCTGCACGAACACTGGGAGAGAAGGA
TGAAGACCGACGACGACATCCGCAGCGGGACTTTGACGGAAGACTTAGTC
GTATTGGTGGCGATGGCACTCGACGTGGACAAAGCAGTAGATTCATCTCG
CAGAAAGAACGCGTATAACCTGAAAAGATGGCGGCAAAAGACGCAACGAG
GCAGCGCATCGCCTGAGTGGCTGGAAAATGTTAACACTGATGAAGCTGAC
GCTAACAGTGCGGTTGAGTCAACGTTGCGAAAGGGCGTTGTGTTTGCGGA
TTACAATCAAGGGTGCGTTCGGGTGACGACGCAAATTGGAGATGAGACAG
TGTTCAGAAGACTGGGGAGACCTACTGTCGGAGCGACGGAGCGTTGTTCT
GCAGTGTTCGCTTGCGTGCATGGTCATGTTGGATGTGCGACGGCAGCAGC
GCTCAATGGTTCTAAATGGCGGTTGCCAAGGGTAACGGCGGGGAAGATAC
ACGACGAAGTTGTGGTGGTAGAGTGTACCAAGGATCAAATCTACGGAGTG
GTTCACACAAGCCATGATGCGATACAAGAGCGCTTGCTGCGCATACCTTC
ATCGAGCGGGTCCGATGCGGCGCTTGTGTCTGACGCACAAGCTCCAATTT
GA

protein sequence of Gcaud8552.t1

>Gcaud8552.t1 ID=Gcaud8552.t1|Name=Gcaud8552.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=634bp
MSEPNPLRSALLSFFNTLLSADDSSAYSIFYAAKNRFEAVASEHYDRFAS
RSDAVYARVISLLDIITPEELLKVCEGFRQISLTDPYNALNAARPAFRAG
IRALLYGCANGIEPCAVSYRHSPHHSGRTVSRVTADRLRVRLPGLLGWPK
SCHAVDKTCVVWIDRAVKGLSSDGAWFVRGLLPYAVVAIAIAHAGIPDMQ
RPWIWLEWMLSSRSMMAEGLRGVVAPSEVVFIALQAMYMPGDMLRKYEYK
DEMEAVILDMFLFGLAALSNIMKDRNNAVAGWSDYKVGLAVVLALSLSPG
DTKWSFVLVDDGNPYGNNLFRCGFVNLLQCAGAEIQLTDDARAYAFVDGQ
IALMKMKRNQLSIARKTKKELIARLNKVAEKGRLARYLKDELHSVSVYCD
VNAELPQHDFITVDELAVLASCQVTLHEHWERRMKTDDDIRSGTLTEDLV
VLVAMALDVDKAVDSSRRKNAYNLKRWRQKTQRGSASPEWLENVNTDEAD
ANSAVESTLRKGVVFADYNQGCVRVTTQIGDETVFRRLGRPTVGATERCS
AVFACVHGHVGCATAAALNGSKWRLPRVTAGKIHDEVVVVECTKDQIYGV
VHTSHDAIQERLLRIPSSSGSDAALVSDAQAPI*

mRNA from alignment at NODE_162_length_42220_cov_4.454604:20384..22285+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8552.t1 ID=Gcaud8552.t1|Name=Gcaud8552.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1902bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:20384..22285+ (Gracilaria caudata M_176_S67 male)
ATGTCAGAACCGAACCCTCTTCGATCAGCACTTCTCTCATTCTTCAACAC
CCTGCTATCAGCCGATGACTCCTCCGCCTACTCCATCTTCTACGCCGCAA
AGAACCGTTTTGAAGCCGTAGCATCTGAACACTACGATCGTTTTGCCTCT
CGATCTGACGCCGTCTACGCCCGTGTGATATCGCTACTCGACATCATCAC
GCCCGAGGAACTCCTGAAAGTCTGCGAAGGTTTCCGACAGATATCTCTCA
CAGATCCTTATAATGCTCTCAACGCTGCCCGTCCCGCCTTTCGCGCAGGA
ATACGTGCTCTCCTTTACGGTTGCGCAAACGGTATCGAACCTTGTGCCGT
AAGCTACCGTCACTCTCCGCACCACTCCGGCCGAACAGTGAGTCGTGTCA
CAGCGGATCGTTTACGCGTACGTTTGCCTGGTTTGCTTGGTTGGCCGAAA
AGTTGTCATGCCGTAGACAAGACCTGTGTGGTCTGGATAGATCGCGCAGT
GAAAGGTCTTTCCTCTGATGGCGCCTGGTTCGTCCGCGGGTTGCTTCCGT
ACGCTGTTGTCGCTATTGCTATTGCCCATGCAGGTATCCCAGATATGCAG
AGACCATGGATATGGTTGGAATGGATGCTGAGTTCACGGTCGATGATGGC
GGAAGGCTTACGCGGCGTTGTGGCTCCATCGGAGGTGGTCTTCATTGCAC
TTCAGGCCATGTACATGCCAGGGGATATGCTCAGAAAGTACGAGTATAAA
GACGAGATGGAGGCGGTTATTTTGGACATGTTCCTCTTTGGACTTGCTGC
CTTGAGTAACATCATGAAAGACAGGAATAACGCTGTTGCAGGCTGGAGTG
ATTACAAGGTTGGGCTTGCTGTTGTCCTGGCCCTTTCACTATCCCCCGGT
GACACAAAATGGAGTTTCGTCCTTGTCGATGATGGAAATCCATACGGGAA
CAATTTGTTCAGGTGTGGATTTGTGAACCTGTTGCAGTGCGCGGGCGCGG
AGATACAACTGACTGATGACGCTCGAGCGTACGCCTTCGTAGACGGCCAG
ATCGCTCTTATGAAAATGAAGCGTAATCAGTTGAGCATAGCAAGGAAAAC
CAAAAAGGAATTGATAGCAAGGCTTAACAAAGTAGCAGAGAAGGGAAGGC
TCGCGCGATATCTGAAGGATGAGCTTCACAGCGTGTCAGTTTATTGCGAT
GTGAACGCCGAACTTCCACAGCATGACTTCATAACGGTGGATGAACTCGC
CGTTCTGGCGTCCTGCCAGGTTACTCTGCACGAACACTGGGAGAGAAGGA
TGAAGACCGACGACGACATCCGCAGCGGGACTTTGACGGAAGACTTAGTC
GTATTGGTGGCGATGGCACTCGACGTGGACAAAGCAGTAGATTCATCTCG
CAGAAAGAACGCGTATAACCTGAAAAGATGGCGGCAAAAGACGCAACGAG
GCAGCGCATCGCCTGAGTGGCTGGAAAATGTTAACACTGATGAAGCTGAC
GCTAACAGTGCGGTTGAGTCAACGTTGCGAAAGGGCGTTGTGTTTGCGGA
TTACAATCAAGGGTGCGTTCGGGTGACGACGCAAATTGGAGATGAGACAG
TGTTCAGAAGACTGGGGAGACCTACTGTCGGAGCGACGGAGCGTTGTTCT
GCAGTGTTCGCTTGCGTGCATGGTCATGTTGGATGTGCGACGGCAGCAGC
GCTCAATGGTTCTAAATGGCGGTTGCCAAGGGTAACGGCGGGGAAGATAC
ACGACGAAGTTGTGGTGGTAGAGTGTACCAAGGATCAAATCTACGGAGTG
GTTCACACAAGCCATGATGCGATACAAGAGCGCTTGCTGCGCATACCTTC
ATCGAGCGGGTCCGATGCGGCGCTTGTGTCTGACGCACAAGCTCCAATTT
GA

Coding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:20384..22285+

>Gcaud8552.t1 ID=Gcaud8552.t1|Name=Gcaud8552.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1902bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:20384..22285+ (Gracilaria caudata M_176_S67 male)
ATGTCAGAACCGAACCCTCTTCGATCAGCACTTCTCTCATTCTTCAACAC
CCTGCTATCAGCCGATGACTCCTCCGCCTACTCCATCTTCTACGCCGCAA
AGAACCGTTTTGAAGCCGTAGCATCTGAACACTACGATCGTTTTGCCTCT
CGATCTGACGCCGTCTACGCCCGTGTGATATCGCTACTCGACATCATCAC
GCCCGAGGAACTCCTGAAAGTCTGCGAAGGTTTCCGACAGATATCTCTCA
CAGATCCTTATAATGCTCTCAACGCTGCCCGTCCCGCCTTTCGCGCAGGA
ATACGTGCTCTCCTTTACGGTTGCGCAAACGGTATCGAACCTTGTGCCGT
AAGCTACCGTCACTCTCCGCACCACTCCGGCCGAACAGTGAGTCGTGTCA
CAGCGGATCGTTTACGCGTACGTTTGCCTGGTTTGCTTGGTTGGCCGAAA
AGTTGTCATGCCGTAGACAAGACCTGTGTGGTCTGGATAGATCGCGCAGT
GAAAGGTCTTTCCTCTGATGGCGCCTGGTTCGTCCGCGGGTTGCTTCCGT
ACGCTGTTGTCGCTATTGCTATTGCCCATGCAGGTATCCCAGATATGCAG
AGACCATGGATATGGTTGGAATGGATGCTGAGTTCACGGTCGATGATGGC
GGAAGGCTTACGCGGCGTTGTGGCTCCATCGGAGGTGGTCTTCATTGCAC
TTCAGGCCATGTACATGCCAGGGGATATGCTCAGAAAGTACGAGTATAAA
GACGAGATGGAGGCGGTTATTTTGGACATGTTCCTCTTTGGACTTGCTGC
CTTGAGTAACATCATGAAAGACAGGAATAACGCTGTTGCAGGCTGGAGTG
ATTACAAGGTTGGGCTTGCTGTTGTCCTGGCCCTTTCACTATCCCCCGGT
GACACAAAATGGAGTTTCGTCCTTGTCGATGATGGAAATCCATACGGGAA
CAATTTGTTCAGGTGTGGATTTGTGAACCTGTTGCAGTGCGCGGGCGCGG
AGATACAACTGACTGATGACGCTCGAGCGTACGCCTTCGTAGACGGCCAG
ATCGCTCTTATGAAAATGAAGCGTAATCAGTTGAGCATAGCAAGGAAAAC
CAAAAAGGAATTGATAGCAAGGCTTAACAAAGTAGCAGAGAAGGGAAGGC
TCGCGCGATATCTGAAGGATGAGCTTCACAGCGTGTCAGTTTATTGCGAT
GTGAACGCCGAACTTCCACAGCATGACTTCATAACGGTGGATGAACTCGC
CGTTCTGGCGTCCTGCCAGGTTACTCTGCACGAACACTGGGAGAGAAGGA
TGAAGACCGACGACGACATCCGCAGCGGGACTTTGACGGAAGACTTAGTC
GTATTGGTGGCGATGGCACTCGACGTGGACAAAGCAGTAGATTCATCTCG
CAGAAAGAACGCGTATAACCTGAAAAGATGGCGGCAAAAGACGCAACGAG
GCAGCGCATCGCCTGAGTGGCTGGAAAATGTTAACACTGATGAAGCTGAC
GCTAACAGTGCGGTTGAGTCAACGTTGCGAAAGGGCGTTGTGTTTGCGGA
TTACAATCAAGGGTGCGTTCGGGTGACGACGCAAATTGGAGATGAGACAG
TGTTCAGAAGACTGGGGAGACCTACTGTCGGAGCGACGGAGCGTTGTTCT
GCAGTGTTCGCTTGCGTGCATGGTCATGTTGGATGTGCGACGGCAGCAGC
GCTCAATGGTTCTAAATGGCGGTTGCCAAGGGTAACGGCGGGGAAGATAC
ACGACGAAGTTGTGGTGGTAGAGTGTACCAAGGATCAAATCTACGGAGTG
GTTCACACAAGCCATGATGCGATACAAGAGCGCTTGCTGCGCATACCTTC
ATCGAGCGGGTCCGATGCGGCGCTTGTGTCTGACGCACAAGCTCCAATTT
GA