Gcaud8541.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8541.t1
Unique NameGcaud8541.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1538_length_9864_cov_4.520004contigNODE_1538_length_9864_cov_4.520004:6812..7258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8541Gcaud8541Gracilaria caudata M_176_S67 malegeneNODE_1538_length_9864_cov_4.520004 6812..7258 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8541.t1.stop1Gcaud8541.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1538_length_9864_cov_4.520004 6812..6814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8541.t1.CDS1Gcaud8541.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1538_length_9864_cov_4.520004 6812..7258 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8541.t1.exon1Gcaud8541.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1538_length_9864_cov_4.520004 6812..7258 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8541.t1.start1Gcaud8541.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1538_length_9864_cov_4.520004 7256..7258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8541.t1Gcaud8541.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1538_length_9864_cov_4.520004 6812..7258 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8541.t1 ID=Gcaud8541.t1|Name=Gcaud8541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=149bp
MVQARELLRKQSFEKGSLRSLVELNAYPYLTEDSDVAQIKERLIPDYVIR
KESLQQDLQALLRAFGCGQSFKTRNVHEDSVRSVDELFYGLHIVDNDQLY
KSLCQVAELNNAGTLEMVKDFIQNNKTKKQITAPFQHRWENSESAASQ*
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spliced messenger RNA

>Gcaud8541.t1 ID=Gcaud8541.t1|Name=Gcaud8541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=447bp|location=Sequence derived from alignment at NODE_1538_length_9864_cov_4.520004:6812..7258- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACAAGCGCGAGAACTGCTACGAAAGCAAAGCTTTGAAAAAGGGTC
GTTGAGAAGCTTGGTCGAACTCAATGCATATCCGTACTTAACAGAAGACT
CTGACGTAGCACAGATCAAGGAGAGGTTGATTCCGGACTATGTCATTCGC
AAAGAGTCTCTGCAGCAAGATTTGCAAGCTCTACTTCGAGCGTTTGGTTG
TGGACAGTCGTTCAAGACTCGAAACGTCCACGAAGATAGTGTTAGGTCAG
TTGACGAACTCTTCTACGGCTTGCATATCGTGGATAACGACCAACTCTAC
AAATCTCTTTGCCAAGTAGCTGAATTGAACAACGCTGGTACGCTCGAAAT
GGTCAAGGATTTCATACAGAACAACAAGACAAAGAAACAAATTACTGCTC
CATTTCAACATCGCTGGGAAAATAGCGAATCTGCAGCTTCACAATGA
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protein sequence of Gcaud8541.t1

>Gcaud8541.t1 ID=Gcaud8541.t1|Name=Gcaud8541.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=149bp
MVQARELLRKQSFEKGSLRSLVELNAYPYLTEDSDVAQIKERLIPDYVIR
KESLQQDLQALLRAFGCGQSFKTRNVHEDSVRSVDELFYGLHIVDNDQLY
KSLCQVAELNNAGTLEMVKDFIQNNKTKKQITAPFQHRWENSESAASQ*
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mRNA from alignment at NODE_1538_length_9864_cov_4.520004:6812..7258-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8541.t1 ID=Gcaud8541.t1|Name=Gcaud8541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=447bp|location=Sequence derived from alignment at NODE_1538_length_9864_cov_4.520004:6812..7258- (Gracilaria caudata M_176_S67 male)
ATGGTACAAGCGCGAGAACTGCTACGAAAGCAAAGCTTTGAAAAAGGGTC
GTTGAGAAGCTTGGTCGAACTCAATGCATATCCGTACTTAACAGAAGACT
CTGACGTAGCACAGATCAAGGAGAGGTTGATTCCGGACTATGTCATTCGC
AAAGAGTCTCTGCAGCAAGATTTGCAAGCTCTACTTCGAGCGTTTGGTTG
TGGACAGTCGTTCAAGACTCGAAACGTCCACGAAGATAGTGTTAGGTCAG
TTGACGAACTCTTCTACGGCTTGCATATCGTGGATAACGACCAACTCTAC
AAATCTCTTTGCCAAGTAGCTGAATTGAACAACGCTGGTACGCTCGAAAT
GGTCAAGGATTTCATACAGAACAACAAGACAAAGAAACAAATTACTGCTC
CATTTCAACATCGCTGGGAAAATAGCGAATCTGCAGCTTCACAATGA
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Coding sequence (CDS) from alignment at NODE_1538_length_9864_cov_4.520004:6812..7258-

>Gcaud8541.t1 ID=Gcaud8541.t1|Name=Gcaud8541.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=447bp|location=Sequence derived from alignment at NODE_1538_length_9864_cov_4.520004:6812..7258- (Gracilaria caudata M_176_S67 male)
ATGGTACAAGCGCGAGAACTGCTACGAAAGCAAAGCTTTGAAAAAGGGTC
GTTGAGAAGCTTGGTCGAACTCAATGCATATCCGTACTTAACAGAAGACT
CTGACGTAGCACAGATCAAGGAGAGGTTGATTCCGGACTATGTCATTCGC
AAAGAGTCTCTGCAGCAAGATTTGCAAGCTCTACTTCGAGCGTTTGGTTG
TGGACAGTCGTTCAAGACTCGAAACGTCCACGAAGATAGTGTTAGGTCAG
TTGACGAACTCTTCTACGGCTTGCATATCGTGGATAACGACCAACTCTAC
AAATCTCTTTGCCAAGTAGCTGAATTGAACAACGCTGGTACGCTCGAAAT
GGTCAAGGATTTCATACAGAACAACAAGACAAAGAAACAAATTACTGCTC
CATTTCAACATCGCTGGGAAAATAGCGAATCTGCAGCTTCACAATGA
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