Gcaud8495.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8495.t1
Unique NameGcaud8495.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1702_length_8926_cov_3.984833contigNODE_1702_length_8926_cov_3.984833:4216..5460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706164.1
Preferred nameUPL1
PFAMsDUF4414,DUF908,DUF913,HECT,UBA
Max annot lvl2759|Eukaryota
KEGG koko:K10592
KEGG Pathwayko04120,map04120
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Evalue2.21e-53
EggNOG OGsCOG5021@1|root,KOG0939@2759|Eukaryota
EC2.3.2.26
Descriptionubiquitin protein ligase activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8495Gcaud8495Gracilaria caudata M_176_S67 malegeneNODE_1702_length_8926_cov_3.984833 4216..5460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8495.t1Gcaud8495.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1702_length_8926_cov_3.984833 4216..5460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8495.t1.CDS1Gcaud8495.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1702_length_8926_cov_3.984833 4216..4234 +
Gcaud8495.t1.CDS2Gcaud8495.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1702_length_8926_cov_3.984833 4332..5049 +
Gcaud8495.t1.CDS3Gcaud8495.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1702_length_8926_cov_3.984833 5261..5460 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8495.t1.exon1Gcaud8495.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1702_length_8926_cov_3.984833 4216..4234 +
Gcaud8495.t1.exon2Gcaud8495.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1702_length_8926_cov_3.984833 4332..5049 +
Gcaud8495.t1.exon3Gcaud8495.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1702_length_8926_cov_3.984833 5261..5460 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8495.t1.intron1Gcaud8495.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1702_length_8926_cov_3.984833 4235..4331 +
Gcaud8495.t1.intron2Gcaud8495.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1702_length_8926_cov_3.984833 5050..5260 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8495.t1.stop1Gcaud8495.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1702_length_8926_cov_3.984833 5458..5460 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8495.t1 ID=Gcaud8495.t1|Name=Gcaud8495.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=313bp
XASRHVLPNFHDIEGQDPDYYKSLKWILENDCTGIIDYKMSAEYDEFGKQ
TLIDLVPNRRYIPVTEENKAEYVRLVIEVRMTKTIEKQIEAFNEGFYEIV
PLEACKISNELELELLISGLPDVDVSDLKANVEYTGYTASSRRSYMEVKV
ASANLHGIRLDPFTALARASASSELEEIARTELVWCDCNSAFVSPFEVPL
NNDALPKCEFCLLLYSKSSRSDELRKKQLARHRRLLAAKGAVQTGWCLAD
EDWTPVYHSKIVEPYDHPNEDVLFEETSIRAENLYGMDENRGLRFEAFRY
NFSGPHIPLGLC*
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spliced messenger RNA

>Gcaud8495.t1 ID=Gcaud8495.t1|Name=Gcaud8495.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=937bp|location=Sequence derived from alignment at NODE_1702_length_8926_cov_3.984833:4216..5460+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AGCATCTCGACACGTTTTGCCGAACTTCCATGATATCGAAGGGCAGGATC
CGGACTACTACAAATCGCTGAAGTGGATCCTTGAAAATGACTGCACGGGA
ATCATTGACTATAAGATGAGCGCGGAGTATGATGAGTTTGGAAAACAAAC
CCTGATTGACCTTGTTCCGAATAGAAGATATATTCCAGTCACCGAAGAGA
ATAAGGCCGAATATGTGAGACTCGTGATAGAAGTGCGCATGACGAAAACG
ATTGAAAAGCAGATTGAAGCGTTTAACGAAGGATTCTATGAGATTGTTCC
ACTTGAGGCTTGTAAGATATCTAACGAGCTTGAGCTAGAGCTTCTGATTT
CTGGACTGCCTGATGTCGACGTTTCAGATTTGAAGGCGAACGTGGAGTAC
ACTGGATATACAGCGTCTTCGCGTCGTTCGTACATGGAGGTCAAGGTGGC
TTCCGCCAATCTGCACGGCATACGGCTCGACCCGTTTACAGCGCTCGCTC
GCGCGTCGGCTTCTTCCGAGCTCGAGGAGATTGCCAGGACCGAGCTCGTG
TGGTGCGACTGTAATTCTGCCTTTGTCTCGCCCTTTGAGGTACCGCTTAA
CAATGACGCTTTGCCGAAGTGCGAGTTTTGCTTGCTGTTGTATTCGAAGA
GCAGTCGCTCCGATGAGCTTAGAAAAAAACAACTTGCTAGGCACCGTCGA
CTTCTCGCCGCAAAGGGTGCTGTCCAAACGGGATGGTGCTTGGCTGATGA
GGATTGGACGCCCGTGTATCATTCAAAGATTGTTGAACCTTACGATCATC
CCAACGAGGATGTCCTGTTTGAAGAGACCTCCATTCGTGCGGAAAATCTG
TACGGAATGGACGAGAACCGCGGGCTCAGGTTCGAGGCGTTTCGCTACAA
CTTCTCTGGTCCTCACATCCCGTTGGGTTTGTGCTGA
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protein sequence of Gcaud8495.t1

>Gcaud8495.t1 ID=Gcaud8495.t1|Name=Gcaud8495.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
XASRHVLPNFHDIEGQDPDYYKSLKWILENDCTGIIDYKMSAEYDEFGKQ
TLIDLVPNRRYIPVTEENKAEYVRLVIEVRMTKTIEKQIEAFNEGFYEIV
PLEACKISNELELELLISGLPDVDVSDLKANVEYTGYTASSRRSYMEVKV
ASANLHGIRLDPFTALARASASSELEEIARTELVWCDCNSAFVSPFEVPL
NNDALPKCEFCLLLYSKSSRSDELRKKQLARHRRLLAAKGAVQTGWCLAD
EDWTPVYHSKIVEPYDHPNEDVLFEETSIRAENLYGMDENRGLRFEAFRY
NFSGPHIPLGLC*
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mRNA from alignment at NODE_1702_length_8926_cov_3.984833:4216..5460+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8495.t1 ID=Gcaud8495.t1|Name=Gcaud8495.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at NODE_1702_length_8926_cov_3.984833:4216..5460+ (Gracilaria caudata M_176_S67 male)
AGCATCTCGACACGTTTTGGTTCATTGGCGGAGTCATTGCCAAAGCAATT
TACGATGGCTAGCTAATAGACGCCTACTTCGCGCGATCTTTCTATAAACG
CATTCTGGGCATGAAGCCGAACTTCCATGATATCGAAGGGCAGGATCCGG
ACTACTACAAATCGCTGAAGTGGATCCTTGAAAATGACTGCACGGGAATC
ATTGACTATAAGATGAGCGCGGAGTATGATGAGTTTGGAAAACAAACCCT
GATTGACCTTGTTCCGAATAGAAGATATATTCCAGTCACCGAAGAGAATA
AGGCCGAATATGTGAGACTCGTGATAGAAGTGCGCATGACGAAAACGATT
GAAAAGCAGATTGAAGCGTTTAACGAAGGATTCTATGAGATTGTTCCACT
TGAGGCTTGTAAGATATCTAACGAGCTTGAGCTAGAGCTTCTGATTTCTG
GACTGCCTGATGTCGACGTTTCAGATTTGAAGGCGAACGTGGAGTACACT
GGATATACAGCGTCTTCGCGTCGTTCGTACATGGAGGTCAAGGTGGCTTC
CGCCAATCTGCACGGCATACGGCTCGACCCGTTTACAGCGCTCGCTCGCG
CGTCGGCTTCTTCCGAGCTCGAGGAGATTGCCAGGACCGAGCTCGTGTGG
TGCGACTGTAATTCTGCCTTTGTCTCGCCCTTTGAGGTACCGCTTAACAA
TGACGCTTTGCCGAAGTGCGAGTTTTGCTTGCTGTTGTATTCGAAGAGCA
GTCGCTCCGATGAGCTTAGAAAAAAACAACTTGCTAGGCACCGTCGACTT
CTCGCCGCAAAGGGTGCTGTCCAAACGGGATGGTGTCATTGAGCGCGCGC
TGAGGGGGAAGTCAGGAATATCCCATCGTAGGAAGTGTAGAGTTGTCACT
TGCGGCGAGAAGGTCACGCCTTCAGATCTTGAACATTTGTATTCTACTCA
GTTTTGCTTCTAGAGGCAAGGCCACGCGTGGGGACCGTACAAAGGCAGAA
AGGCGAAGCGCTGCCTTTATGTCATTTATCGCGACATTATTAAAGGCTTG
GCTGATGAGGATTGGACGCCCGTGTATCATTCAAAGATTGTTGAACCTTA
CGATCATCCCAACGAGGATGTCCTGTTTGAAGAGACCTCCATTCGTGCGG
AAAATCTGTACGGAATGGACGAGAACCGCGGGCTCAGGTTCGAGGCGTTT
CGCTACAACTTCTCTGGTCCTCACATCCCGTTGGGTTTGTGCTGA
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Coding sequence (CDS) from alignment at NODE_1702_length_8926_cov_3.984833:4216..5460+

>Gcaud8495.t1 ID=Gcaud8495.t1|Name=Gcaud8495.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=937bp|location=Sequence derived from alignment at NODE_1702_length_8926_cov_3.984833:4216..5460+ (Gracilaria caudata M_176_S67 male)
AGCATCTCGACACGTTTTGCCGAACTTCCATGATATCGAAGGGCAGGATC
CGGACTACTACAAATCGCTGAAGTGGATCCTTGAAAATGACTGCACGGGA
ATCATTGACTATAAGATGAGCGCGGAGTATGATGAGTTTGGAAAACAAAC
CCTGATTGACCTTGTTCCGAATAGAAGATATATTCCAGTCACCGAAGAGA
ATAAGGCCGAATATGTGAGACTCGTGATAGAAGTGCGCATGACGAAAACG
ATTGAAAAGCAGATTGAAGCGTTTAACGAAGGATTCTATGAGATTGTTCC
ACTTGAGGCTTGTAAGATATCTAACGAGCTTGAGCTAGAGCTTCTGATTT
CTGGACTGCCTGATGTCGACGTTTCAGATTTGAAGGCGAACGTGGAGTAC
ACTGGATATACAGCGTCTTCGCGTCGTTCGTACATGGAGGTCAAGGTGGC
TTCCGCCAATCTGCACGGCATACGGCTCGACCCGTTTACAGCGCTCGCTC
GCGCGTCGGCTTCTTCCGAGCTCGAGGAGATTGCCAGGACCGAGCTCGTG
TGGTGCGACTGTAATTCTGCCTTTGTCTCGCCCTTTGAGGTACCGCTTAA
CAATGACGCTTTGCCGAAGTGCGAGTTTTGCTTGCTGTTGTATTCGAAGA
GCAGTCGCTCCGATGAGCTTAGAAAAAAACAACTTGCTAGGCACCGTCGA
CTTCTCGCCGCAAAGGGTGCTGTCCAAACGGGATGGTGCTTGGCTGATGA
GGATTGGACGCCCGTGTATCATTCAAAGATTGTTGAACCTTACGATCATC
CCAACGAGGATGTCCTGTTTGAAGAGACCTCCATTCGTGCGGAAAATCTG
TACGGAATGGACGAGAACCGCGGGCTCAGGTTCGAGGCGTTTCGCTACAA
CTTCTCTGGTCCTCACATCCCGTTGGGTTTGTGCTGA
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