Gcaud8483.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8483.t1
Unique Name	Gcaud8483.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1141_length_13362_cov_4.300354	contig	NODE_1141_length_13362_cov_4.300354:988..1959 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3880.AET03420
PFAMs	DUF4228,Nucleotid_trans,PNISR
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20892
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0034645,GO:0035250,GO:0036211,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070085,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	1.98e-12
EggNOG OGs	2CMQE@1\|root,2QRDX@2759\|Eukaryota,37PIJ@33090\|Viridiplantae,3G9VB@35493\|Streptophyta,4JKNX@91835\|fabids
Description	Nucleotide-diphospho-sugar transferase
COG category	S
CAZy	GT77
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8483	Gcaud8483	Gracilaria caudata M_176_S67 male	gene	NODE_1141_length_13362_cov_4.300354 988..1959 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8483.t1.start1	Gcaud8483.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1141_length_13362_cov_4.300354 988..990 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8483.t1.CDS1	Gcaud8483.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1141_length_13362_cov_4.300354 988..1959 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8483.t1.exon1	Gcaud8483.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1141_length_13362_cov_4.300354 988..1959 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8483.t1.stop1	Gcaud8483.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1141_length_13362_cov_4.300354 1957..1959 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8483.t1	Gcaud8483.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1141_length_13362_cov_4.300354 988..1959 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1141_length_13362_cov_4.300354:988..1959+
coding sequence from alignment at NODE_1141_length_13362_cov_4.300354:988..1959+

mRNA sequence

>Gcaud8483.t1 ID=Gcaud8483.t1|Name=Gcaud8483.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp
LSPSNLLVFSLDERAHRFVSAVGLASVRLDDDDDHGEEAVFGTKEFNLLS
KRKLAAVKAVLDAALDVLFTDADVVWCRDAFPHVARLVDDAPSDLLVQTA
WPRSLLNSGFYYVRSNKATRALFDAFLGFPEDSENDQVVFNRVMCNPKFG
GSPVANLSAEYSHDAVTTARGARPLGCRWRDATAHLLPPHLFPTGGEIID
GEKIFHLQRKRIVDMCESGSPLVLHNNCILSDKKLARFIVKGIWYVNPAV
MDGDDDEHVEKIGFEDDVPADENDGAQFDLSDEHDLQRVCGHPVPPTHEM
RRRCGASKCGDDGDVHRFPEMAI*

spliced messenger RNA

>Gcaud8483.t1 ID=Gcaud8483.t1|Name=Gcaud8483.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:988..1959+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCGCCAAGCAACCTGCTCGTGTTCTCGCTGGATGAGCGCGCGCATCG
CTTCGTCAGCGCCGTCGGATTGGCCAGCGTGAGGCTcgatgacgacgacg
accacggcgaggaGGCCGTGTTCGGCACCAAGGAGTTCAACCTGCTTTCC
AAGAGAAAGCTCGCTGCAGTCAAGGCCGTCCTGGACGCTGCGCTGGACGT
GTTGTTCACGGATGCTGACGTGGTGTGGTGTCGCGACGCCTTTCCGCACG
TGGCGCGCCTAGTAGATGACGCACCGTCTGATTTACTGGTGCAGACAGCG
TGGCCGCGCAGCTTGCTCAACTCCGGTTTCTACTACGTGAGGTCGAACAA
GGCTACGCGCGCCCTGTTCGACGCCTTCCTCGGCTTTCCGGAGGACTCGG
AAAATGATCAGGTTGTGTTCAATCGCGTTATGTGCAACCCCAAGTTTGGC
GGTTCTCCCGTTGCCAACCTCAGCGCCGAGTACTCGCACGACGCTGTGAC
CACTGCGCGTGGCGCGCGTCCATTGGGATGTCGCTGGCGTGACGCTACTG
CCCATCTGCTCCCGCCCCATCTGTTTCCCACAGGCGGTGAGATTATTGAT
GGGGAGAAGATCTTCCACTTACAGAGGAAGCGCATCGTCGACATGTGCGA
GAGTGGCTCTCCGCTCGTGTTGCATAACAATTGCATTCTCAGCGACAAGA
AGTTGGCCAGGTTTATTGTGAAGGGCATTTGGTATGTGAACCCGGCCGTT
ATGGACGGCGATGACGACGAGCATGTAGAAAAGATCGGCTTCGAGGACGA
TGTTCCCGCCGATGAGAATGATGGCGCGCAGTTCGATTTAAGCGACGAAC
ATGACTTGCAACGCGTTTGCGGGCACCCCGTGCCGCCAACCCATGAAATG
AGGCGTCGCTGCGGCGCGAGCAAATGTGGCGATGACGGCGATGTGCATCG
CTTTCCAGAAATGGCCATTTGA

protein sequence of Gcaud8483.t1

>Gcaud8483.t1 ID=Gcaud8483.t1|Name=Gcaud8483.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
LSPSNLLVFSLDERAHRFVSAVGLASVRLDDDDDHGEEAVFGTKEFNLLS
KRKLAAVKAVLDAALDVLFTDADVVWCRDAFPHVARLVDDAPSDLLVQTA
WPRSLLNSGFYYVRSNKATRALFDAFLGFPEDSENDQVVFNRVMCNPKFG
GSPVANLSAEYSHDAVTTARGARPLGCRWRDATAHLLPPHLFPTGGEIID
GEKIFHLQRKRIVDMCESGSPLVLHNNCILSDKKLARFIVKGIWYVNPAV
MDGDDDEHVEKIGFEDDVPADENDGAQFDLSDEHDLQRVCGHPVPPTHEM
RRRCGASKCGDDGDVHRFPEMAI*

mRNA from alignment at NODE_1141_length_13362_cov_4.300354:988..1959+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8483.t1 ID=Gcaud8483.t1|Name=Gcaud8483.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:988..1959+ (Gracilaria caudata M_176_S67 male)
CTGTCGCCAAGCAACCTGCTCGTGTTCTCGCTGGATGAGCGCGCGCATCG
CTTCGTCAGCGCCGTCGGATTGGCCAGCGTGAGGCTcgatgacgacgacg
accacggcgaggaGGCCGTGTTCGGCACCAAGGAGTTCAACCTGCTTTCC
AAGAGAAAGCTCGCTGCAGTCAAGGCCGTCCTGGACGCTGCGCTGGACGT
GTTGTTCACGGATGCTGACGTGGTGTGGTGTCGCGACGCCTTTCCGCACG
TGGCGCGCCTAGTAGATGACGCACCGTCTGATTTACTGGTGCAGACAGCG
TGGCCGCGCAGCTTGCTCAACTCCGGTTTCTACTACGTGAGGTCGAACAA
GGCTACGCGCGCCCTGTTCGACGCCTTCCTCGGCTTTCCGGAGGACTCGG
AAAATGATCAGGTTGTGTTCAATCGCGTTATGTGCAACCCCAAGTTTGGC
GGTTCTCCCGTTGCCAACCTCAGCGCCGAGTACTCGCACGACGCTGTGAC
CACTGCGCGTGGCGCGCGTCCATTGGGATGTCGCTGGCGTGACGCTACTG
CCCATCTGCTCCCGCCCCATCTGTTTCCCACAGGCGGTGAGATTATTGAT
GGGGAGAAGATCTTCCACTTACAGAGGAAGCGCATCGTCGACATGTGCGA
GAGTGGCTCTCCGCTCGTGTTGCATAACAATTGCATTCTCAGCGACAAGA
AGTTGGCCAGGTTTATTGTGAAGGGCATTTGGTATGTGAACCCGGCCGTT
ATGGACGGCGATGACGACGAGCATGTAGAAAAGATCGGCTTCGAGGACGA
TGTTCCCGCCGATGAGAATGATGGCGCGCAGTTCGATTTAAGCGACGAAC
ATGACTTGCAACGCGTTTGCGGGCACCCCGTGCCGCCAACCCATGAAATG
AGGCGTCGCTGCGGCGCGAGCAAATGTGGCGATGACGGCGATGTGCATCG
CTTTCCAGAAATGGCCATTTGA

Coding sequence (CDS) from alignment at NODE_1141_length_13362_cov_4.300354:988..1959+

>Gcaud8483.t1 ID=Gcaud8483.t1|Name=Gcaud8483.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=972bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:988..1959+ (Gracilaria caudata M_176_S67 male)
CTGTCGCCAAGCAACCTGCTCGTGTTCTCGCTGGATGAGCGCGCGCATCG
CTTCGTCAGCGCCGTCGGATTGGCCAGCGTGAGGCTcgatgacgacgacg
accacggcgaggaGGCCGTGTTCGGCACCAAGGAGTTCAACCTGCTTTCC
AAGAGAAAGCTCGCTGCAGTCAAGGCCGTCCTGGACGCTGCGCTGGACGT
GTTGTTCACGGATGCTGACGTGGTGTGGTGTCGCGACGCCTTTCCGCACG
TGGCGCGCCTAGTAGATGACGCACCGTCTGATTTACTGGTGCAGACAGCG
TGGCCGCGCAGCTTGCTCAACTCCGGTTTCTACTACGTGAGGTCGAACAA
GGCTACGCGCGCCCTGTTCGACGCCTTCCTCGGCTTTCCGGAGGACTCGG
AAAATGATCAGGTTGTGTTCAATCGCGTTATGTGCAACCCCAAGTTTGGC
GGTTCTCCCGTTGCCAACCTCAGCGCCGAGTACTCGCACGACGCTGTGAC
CACTGCGCGTGGCGCGCGTCCATTGGGATGTCGCTGGCGTGACGCTACTG
CCCATCTGCTCCCGCCCCATCTGTTTCCCACAGGCGGTGAGATTATTGAT
GGGGAGAAGATCTTCCACTTACAGAGGAAGCGCATCGTCGACATGTGCGA
GAGTGGCTCTCCGCTCGTGTTGCATAACAATTGCATTCTCAGCGACAAGA
AGTTGGCCAGGTTTATTGTGAAGGGCATTTGGTATGTGAACCCGGCCGTT
ATGGACGGCGATGACGACGAGCATGTAGAAAAGATCGGCTTCGAGGACGA
TGTTCCCGCCGATGAGAATGATGGCGCGCAGTTCGATTTAAGCGACGAAC
ATGACTTGCAACGCGTTTGCGGGCACCCCGTGCCGCCAACCCATGAAATG
AGGCGTCGCTGCGGCGCGAGCAAATGTGGCGATGACGGCGATGTGCATCG
CTTTCCAGAAATGGCCATTTGA