Gcaud848.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud848.t1
Unique NameGcaud848.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2645_length_5077_cov_7.393903contigNODE_2645_length_5077_cov_7.393903:4687..5061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud848Gcaud848Gracilaria caudata M_176_S67 malegeneNODE_2645_length_5077_cov_7.393903 4687..5061 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud848.t1.stop1Gcaud848.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2645_length_5077_cov_7.393903 4687..4689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud848.t1.CDS1Gcaud848.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2645_length_5077_cov_7.393903 4687..5061 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud848.t1.exon1Gcaud848.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2645_length_5077_cov_7.393903 4687..5061 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud848.t1.start1Gcaud848.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2645_length_5077_cov_7.393903 5059..5061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud848.t1Gcaud848.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2645_length_5077_cov_7.393903 4687..5061 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud848.t1 ID=Gcaud848.t1|Name=Gcaud848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=125bp
MRVGSVLTGGEPEFPSEDSLECNSPTLIPLEERADAFCYEPESISSRVVS
REQLAVRQESELPSSVFNGTNDADLTVKVQQTDGEVFINVTFIPPIIERD
DGTAVGGAFAKSLRCRPRTLRTLR*
back to top

spliced messenger RNA

>Gcaud848.t1 ID=Gcaud848.t1|Name=Gcaud848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp|location=Sequence derived from alignment at NODE_2645_length_5077_cov_7.393903:4687..5061- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGTGGGTTCGGTGCTCACCGGAGGAGAACCGGAATTTCCAAGTGA
AGACAGTCTCGAATGCAACTCACCAACTCTGATTCCACTCGAAGAACGCG
CCGATGCGTTCTGCTACGAACCAGAAAGTATTTCGTCACGCGTTGTCAGT
CGTGAACAACTTGCGGTGCGTCAGGAATCGGAGTTGCCCTCAAGCGTTTT
CAACGGCACCAACGATGCGGATCTTACTGTTAAGGTGCAACAGACAGACG
GTGAGGTCTTCATCAACGTCACATTCATACCGCCCATCATTGAGCGCGAT
GACGGTACCGCAGTGGGGGGCGCGTTTGCAAAAAGTCTTCGATGTCGACC
ACGAACGCTTCGTACGCTTCGATAA
back to top

protein sequence of Gcaud848.t1

>Gcaud848.t1 ID=Gcaud848.t1|Name=Gcaud848.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=125bp
MRVGSVLTGGEPEFPSEDSLECNSPTLIPLEERADAFCYEPESISSRVVS
REQLAVRQESELPSSVFNGTNDADLTVKVQQTDGEVFINVTFIPPIIERD
DGTAVGGAFAKSLRCRPRTLRTLR*
back to top

mRNA from alignment at NODE_2645_length_5077_cov_7.393903:4687..5061-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud848.t1 ID=Gcaud848.t1|Name=Gcaud848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp|location=Sequence derived from alignment at NODE_2645_length_5077_cov_7.393903:4687..5061- (Gracilaria caudata M_176_S67 male)
ATGCGAGTGGGTTCGGTGCTCACCGGAGGAGAACCGGAATTTCCAAGTGA
AGACAGTCTCGAATGCAACTCACCAACTCTGATTCCACTCGAAGAACGCG
CCGATGCGTTCTGCTACGAACCAGAAAGTATTTCGTCACGCGTTGTCAGT
CGTGAACAACTTGCGGTGCGTCAGGAATCGGAGTTGCCCTCAAGCGTTTT
CAACGGCACCAACGATGCGGATCTTACTGTTAAGGTGCAACAGACAGACG
GTGAGGTCTTCATCAACGTCACATTCATACCGCCCATCATTGAGCGCGAT
GACGGTACCGCAGTGGGGGGCGCGTTTGCAAAAAGTCTTCGATGTCGACC
ACGAACGCTTCGTACGCTTCGATAA
back to top

Coding sequence (CDS) from alignment at NODE_2645_length_5077_cov_7.393903:4687..5061-

>Gcaud848.t1 ID=Gcaud848.t1|Name=Gcaud848.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=375bp|location=Sequence derived from alignment at NODE_2645_length_5077_cov_7.393903:4687..5061- (Gracilaria caudata M_176_S67 male)
ATGCGAGTGGGTTCGGTGCTCACCGGAGGAGAACCGGAATTTCCAAGTGA
AGACAGTCTCGAATGCAACTCACCAACTCTGATTCCACTCGAAGAACGCG
CCGATGCGTTCTGCTACGAACCAGAAAGTATTTCGTCACGCGTTGTCAGT
CGTGAACAACTTGCGGTGCGTCAGGAATCGGAGTTGCCCTCAAGCGTTTT
CAACGGCACCAACGATGCGGATCTTACTGTTAAGGTGCAACAGACAGACG
GTGAGGTCTTCATCAACGTCACATTCATACCGCCCATCATTGAGCGCGAT
GACGGTACCGCAGTGGGGGGCGCGTTTGCAAAAAGTCTTCGATGTCGACC
ACGAACGCTTCGTACGCTTCGATAA
back to top