Gcaud8474.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8474.t1
Unique Name	Gcaud8474.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	437

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_412_length_26355_cov_4.423431	contig	NODE_412_length_26355_cov_4.423431:19234..20620 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	497965.Cyan7822_0003
PFAMs	Tocopherol_cycl
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01911
KEGG ko	ko:K09834
KEGG Reaction	R07502,R07503,R10623,R10624
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00112
Evalue	3.72e-69
EggNOG OGs	arCOG12964@1\|root,2Z7HP@2\|Bacteria,1G36B@1117\|Cyanobacteria,3KFRS@43988\|Cyanothece
EC	5.5.1.24
Description	Tocopherol cyclase
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8474	Gcaud8474	Gracilaria caudata M_176_S67 male	gene	NODE_412_length_26355_cov_4.423431 19234..20620 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8474.t1	Gcaud8474.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_412_length_26355_cov_4.423431 19234..20620 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8474.t1.start1	Gcaud8474.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_412_length_26355_cov_4.423431 19234..19236 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8474.t1.CDS1	Gcaud8474.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_412_length_26355_cov_4.423431 19234..20179 +
Gcaud8474.t1.CDS2	Gcaud8474.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_412_length_26355_cov_4.423431 20256..20620 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8474.t1.exon1	Gcaud8474.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_412_length_26355_cov_4.423431 19234..20179 +
Gcaud8474.t1.exon2	Gcaud8474.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_412_length_26355_cov_4.423431 20256..20620 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8474.t1.intron1	Gcaud8474.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_412_length_26355_cov_4.423431 20180..20255 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8474.t1.stop1	Gcaud8474.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_412_length_26355_cov_4.423431 20618..20620 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_412_length_26355_cov_4.423431:19234..20620+
coding sequence from alignment at NODE_412_length_26355_cov_4.423431:19234..20620+

mRNA sequence

>Gcaud8474.t1 ID=Gcaud8474.t1|Name=Gcaud8474.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=437bp
MAAPLVQYGIQDMNIAFITTSPFKLKSFRMKSRTSALKMSHAIGSIGRTA
WPPPSQIPPVINSKHSPSYYSLRLPEEKFFEGWYLRVSLPETDESFAFMF
AIEAPGEGTVQLLSSDDSLYVSRLPKDAGRFYGSTSRFDIGHWIDKSETE
DGRHDSMTADDSAMQGYQICDISCHGLFTSDGERMSSKQIQWGIDYTPML
TWGTRGSSRHTSTWLAKFGIFEPGYQVLMAHGAITSGYIRCGDKEVDVTG
GSVYCEKNWGRSFPSRWWWVQANAFKDEPDLTILALGAVRKVVIQTETIG
MLSVHYKGKMYEFAPWACEYVKWDVEEWGSWKASAKAITGHEMIIEAHTN
EPPVQVLGPSNEGMVYNIRDCSRGVLSATLKDGNGEIILDSIKCRNAQVE
VGGDWEGRWVAEVPSFARILRIFVNSFNGPKVVTTP*

spliced messenger RNA

>Gcaud8474.t1 ID=Gcaud8474.t1|Name=Gcaud8474.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:19234..20620+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCACCGCTTGTTCAATACGGTATTCAAGACATGAACATTGCATT
TATCACCACTTCTCCTTTTAAACTGAAGTCATTCCGCATGAAGTCAAGAA
CATCAGCTTTGAAAATGTCACATGCGATAGGATCTATTGGAAGAACTGCA
TGGCCTCCACCCTCTCAGATACCACCGGTCATTAATTCCAAACACTCCCC
TTCGTATTATTCACTTCGTCTTCCAGAAGAAAAATTTTTTGAGGGGTGGT
ATTTGAGGGTGTCTCTTCCTGAAACGGATGAGAGTTTTGCCTTCATGTTT
GCAATTGAAGCTCCGGGCGAAGGTACCGTGCAGCTGCTTTCGTCAGACGA
TTCGTTGTATGTATCTAGACTACCAAAAGATGCTGGCCGGTTTTACGGAA
GTACGAGTAGATTCGATATTGGGCACTGGATTGACAAATCAGAGACGGAG
GATGGTCGACATGATTCCATGACCGCCGACGACTCTGCGATGCAAGGGTA
TCAAATATGCGATATATCTTGTCACGGGCTGTTTACCAGTGATGGCGAAC
GAATGAGTTCAAAGCAGATTCAGTGGGGCATTGATTACACACCGATGTTA
ACTTGGGGAACGCGCGGAAGCTCACGTCATACCTCTACATGGCTTGCGAA
GTTTGGAATCTTTGAACCGGGGTATCAAGTTCTAATGGCGCATGGAGCGA
TAACAAGCGGATACATTCGATGTGGGGATAAGGAGGTGGATGTAACAGGG
GGTTCTGTCTATTGCGAGAAGAACTGGGGACGCTCATTCCCAAGTAGATG
GTGGTGGGTTCAAGCGAATGCATTCAAAGATGAACCGGACTTAACCATTT
TGGCCCTTGGTGCGGTGCGAAAAGTCGTGATCCAAACTGAAACAATCGGG
ATGCTCTCGGTGCACTACAAGGGGAAAATGTACGAGTTTGCTCCATGGGC
TTGTGAGTATGTCAAGTGGGACGTAGAAGAATGGGGATCTTGGAAGGCTT
CTGCGAAGGCTATAACAGGTCATGAGATGATTATTGAGGCACACACGAAC
GAGCCTCCAGTACAGGTTCTGGGACCCTCGAATGAGGGCATGGTGTACAA
TATTCGAGACTGCTCACGTGGGGTGCTAAGCGCGACTTTGAAGGACGGAA
ATGGCGAAATCATTCTTGACAGCATCAAGTGCCGCAACGCTCAAGTGGAG
GTCGGGGGCGATTGGGAGGGTCGATGGGTCGCAGAGGTGCCGTCGTTTGC
GAGGATTCTGCGAATCTTCGTTAATTCGTTCAACGGGCCTAAGGTGGTGA
CGACTCCATAG

protein sequence of Gcaud8474.t1

>Gcaud8474.t1 ID=Gcaud8474.t1|Name=Gcaud8474.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=437bp
MAAPLVQYGIQDMNIAFITTSPFKLKSFRMKSRTSALKMSHAIGSIGRTA
WPPPSQIPPVINSKHSPSYYSLRLPEEKFFEGWYLRVSLPETDESFAFMF
AIEAPGEGTVQLLSSDDSLYVSRLPKDAGRFYGSTSRFDIGHWIDKSETE
DGRHDSMTADDSAMQGYQICDISCHGLFTSDGERMSSKQIQWGIDYTPML
TWGTRGSSRHTSTWLAKFGIFEPGYQVLMAHGAITSGYIRCGDKEVDVTG
GSVYCEKNWGRSFPSRWWWVQANAFKDEPDLTILALGAVRKVVIQTETIG
MLSVHYKGKMYEFAPWACEYVKWDVEEWGSWKASAKAITGHEMIIEAHTN
EPPVQVLGPSNEGMVYNIRDCSRGVLSATLKDGNGEIILDSIKCRNAQVE
VGGDWEGRWVAEVPSFARILRIFVNSFNGPKVVTTP*

mRNA from alignment at NODE_412_length_26355_cov_4.423431:19234..20620+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8474.t1 ID=Gcaud8474.t1|Name=Gcaud8474.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1387bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:19234..20620+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCACCGCTTGTTCAATACGGTATTCAAGACATGAACATTGCATT
TATCACCACTTCTCCTTTTAAACTGAAGTCATTCCGCATGAAGTCAAGAA
CATCAGCTTTGAAAATGTCACATGCGATAGGATCTATTGGAAGAACTGCA
TGGCCTCCACCCTCTCAGATACCACCGGTCATTAATTCCAAACACTCCCC
TTCGTATTATTCACTTCGTCTTCCAGAAGAAAAATTTTTTGAGGGGTGGT
ATTTGAGGGTGTCTCTTCCTGAAACGGATGAGAGTTTTGCCTTCATGTTT
GCAATTGAAGCTCCGGGCGAAGGTACCGTGCAGCTGCTTTCGTCAGACGA
TTCGTTGTATGTATCTAGACTACCAAAAGATGCTGGCCGGTTTTACGGAA
GTACGAGTAGATTCGATATTGGGCACTGGATTGACAAATCAGAGACGGAG
GATGGTCGACATGATTCCATGACCGCCGACGACTCTGCGATGCAAGGGTA
TCAAATATGCGATATATCTTGTCACGGGCTGTTTACCAGTGATGGCGAAC
GAATGAGTTCAAAGCAGATTCAGTGGGGCATTGATTACACACCGATGTTA
ACTTGGGGAACGCGCGGAAGCTCACGTCATACCTCTACATGGCTTGCGAA
GTTTGGAATCTTTGAACCGGGGTATCAAGTTCTAATGGCGCATGGAGCGA
TAACAAGCGGATACATTCGATGTGGGGATAAGGAGGTGGATGTAACAGGG
GGTTCTGTCTATTGCGAGAAGAACTGGGGACGCTCATTCCCAAGTAGATG
GTGGTGGGTTCAAGCGAATGCATTCAAAGATGAACCGGACTTAACCATTT
TGGCCCTTGGTGCGGTGCGAAAAGTCGTGATCCAAACTGAAACAATCGGG
ATGCTCTCGGTGCACTACAAGGGGAAAATGTACGAGTTTGCTCCATGTAA
GTTATTGCGGCACCAACGTCGTTTATGAATGCGTAGAAGCAGAGCACATG
ACTAACAATTTGCTTTTTGCAGGGGCTTGTGAGTATGTCAAGTGGGACGT
AGAAGAATGGGGATCTTGGAAGGCTTCTGCGAAGGCTATAACAGGTCATG
AGATGATTATTGAGGCACACACGAACGAGCCTCCAGTACAGGTTCTGGGA
CCCTCGAATGAGGGCATGGTGTACAATATTCGAGACTGCTCACGTGGGGT
GCTAAGCGCGACTTTGAAGGACGGAAATGGCGAAATCATTCTTGACAGCA
TCAAGTGCCGCAACGCTCAAGTGGAGGTCGGGGGCGATTGGGAGGGTCGA
TGGGTCGCAGAGGTGCCGTCGTTTGCGAGGATTCTGCGAATCTTCGTTAA
TTCGTTCAACGGGCCTAAGGTGGTGACGACTCCATAG

Coding sequence (CDS) from alignment at NODE_412_length_26355_cov_4.423431:19234..20620+

>Gcaud8474.t1 ID=Gcaud8474.t1|Name=Gcaud8474.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1311bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:19234..20620+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCACCGCTTGTTCAATACGGTATTCAAGACATGAACATTGCATT
TATCACCACTTCTCCTTTTAAACTGAAGTCATTCCGCATGAAGTCAAGAA
CATCAGCTTTGAAAATGTCACATGCGATAGGATCTATTGGAAGAACTGCA
TGGCCTCCACCCTCTCAGATACCACCGGTCATTAATTCCAAACACTCCCC
TTCGTATTATTCACTTCGTCTTCCAGAAGAAAAATTTTTTGAGGGGTGGT
ATTTGAGGGTGTCTCTTCCTGAAACGGATGAGAGTTTTGCCTTCATGTTT
GCAATTGAAGCTCCGGGCGAAGGTACCGTGCAGCTGCTTTCGTCAGACGA
TTCGTTGTATGTATCTAGACTACCAAAAGATGCTGGCCGGTTTTACGGAA
GTACGAGTAGATTCGATATTGGGCACTGGATTGACAAATCAGAGACGGAG
GATGGTCGACATGATTCCATGACCGCCGACGACTCTGCGATGCAAGGGTA
TCAAATATGCGATATATCTTGTCACGGGCTGTTTACCAGTGATGGCGAAC
GAATGAGTTCAAAGCAGATTCAGTGGGGCATTGATTACACACCGATGTTA
ACTTGGGGAACGCGCGGAAGCTCACGTCATACCTCTACATGGCTTGCGAA
GTTTGGAATCTTTGAACCGGGGTATCAAGTTCTAATGGCGCATGGAGCGA
TAACAAGCGGATACATTCGATGTGGGGATAAGGAGGTGGATGTAACAGGG
GGTTCTGTCTATTGCGAGAAGAACTGGGGACGCTCATTCCCAAGTAGATG
GTGGTGGGTTCAAGCGAATGCATTCAAAGATGAACCGGACTTAACCATTT
TGGCCCTTGGTGCGGTGCGAAAAGTCGTGATCCAAACTGAAACAATCGGG
ATGCTCTCGGTGCACTACAAGGGGAAAATGTACGAGTTTGCTCCATGGGC
TTGTGAGTATGTCAAGTGGGACGTAGAAGAATGGGGATCTTGGAAGGCTT
CTGCGAAGGCTATAACAGGTCATGAGATGATTATTGAGGCACACACGAAC
GAGCCTCCAGTACAGGTTCTGGGACCCTCGAATGAGGGCATGGTGTACAA
TATTCGAGACTGCTCACGTGGGGTGCTAAGCGCGACTTTGAAGGACGGAA
ATGGCGAAATCATTCTTGACAGCATCAAGTGCCGCAACGCTCAAGTGGAG
GTCGGGGGCGATTGGGAGGGTCGATGGGTCGCAGAGGTGCCGTCGTTTGC
GAGGATTCTGCGAATCTTCGTTAATTCGTTCAACGGGCCTAAGGTGGTGA
CGACTCCATAG